prot_P-littoralis_Contig1129.6.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig1129.6.1
Unique Nameprot_P-littoralis_Contig1129.6.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length111
Homology
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BLAST of mRNA_P-littoralis_Contig1129.6.1 vs. uniprot
Match: A0A6H5JN01_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN01_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 4.410e-25
Identity = 62/114 (54.39%), Postives = 82/114 (71.93%), Query Frame = 0 
Query:    1 MVGDGECLPVSCFGDLDLVLHCRYDVRVTLRNVAVVPKLVLDVISFSVIQKAKIPILLDERGATLLDGKVTFAMHENGSFVEGTRVP--PSTRSPPAPIVAAV-MRPGRPKSMN 111
            MVGDG C+PVS FGDLDL+LHC  DV VTL+NVAV   LVL++IS + +Q+    I+LD  GA+ ++GKV F  +++G+FV+ TRV   P   S P P++AA  MRPG P+SMN
Sbjct:  124 MVGDGACMPVSFFGDLDLLLHCDEDVLVTLKNVAVAHGLVLNLISLNRVQERH-RIVLDHAGASSMEGKVKFTKYDDGNFVQATRVAHGPRRDSRPLPVLAAAAMRPGPPRSMN 236
[Close]
BLAST of mRNA_P-littoralis_Contig1129.6.1 vs. uniprot
Match: A0A6H5JCD8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCD8_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 5.010e-21
Identity = 51/110 (46.36%), Postives = 76/110 (69.09%), Query Frame = 0 
Query:    2 VGDGECLPVSCFGDLDLVLHCRYDVRVTLRNVAVVPKLVLDVISFSVIQKAKIPILLDERGATLLDGKVTFAMHENGSFVEGTRVPPSTRSPPAPIVAAVMRPGRPKSMN 111
            +GDG  L   CFG LD+V HCR DV VT++++AVVP L  D++S +VIQ+    +LL+  G  +L+G+V F+    G++++ TR+     SPPA +VAA +RPGRP+S+N
Sbjct:   48 IGDGRKLKAECFGSLDVVFHCREDVLVTMKDIAVVPDLAFDLVSLNVIQETH-DLLLNSAGTWILNGRVHFSKLPTGNYIQATRIAHGA-SPPA-MVAATVRPGRPRSIN 154
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1129.6.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JN01_9PHAE4.410e-2554.39Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JCD8_9PHAE5.010e-2146.36Integrase catalytic domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1129contigP-littoralis_Contig1129:17384..17716 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1129.6.1mRNA_P-littoralis_Contig1129.6.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig1129 17070..17716 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig1129.6.1 ID=prot_P-littoralis_Contig1129.6.1|Name=mRNA_P-littoralis_Contig1129.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=111bp
MVGDGECLPVSCFGDLDLVLHCRYDVRVTLRNVAVVPKLVLDVISFSVIQ
KAKIPILLDERGATLLDGKVTFAMHENGSFVEGTRVPPSTRSPPAPIVAA
VMRPGRPKSMN
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