mRNA_P-littoralis_Contig1129.33.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1129.33.1
Unique NamemRNA_P-littoralis_Contig1129.33.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1129.33.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1129contigP-littoralis_Contig1129:47042..48287 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1246
Hectar predicted targeting categoryother localisation
Exons1
Cds size684
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789456.097374-UTR-P-littoralis_Contig1129:47041..474921680789456.097374-UTR-P-littoralis_Contig1129:47041..47492Pylaiella littoralis U1_48UTRP-littoralis_Contig1129 47042..47492 -
1680789456.1211128-UTR-P-littoralis_Contig1129:48176..482871680789456.1211128-UTR-P-littoralis_Contig1129:48176..48287Pylaiella littoralis U1_48UTRP-littoralis_Contig1129 48177..48287 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789456.1086075-CDS-P-littoralis_Contig1129:47492..481761680789456.1086075-CDS-P-littoralis_Contig1129:47492..48176Pylaiella littoralis U1_48CDSP-littoralis_Contig1129 47493..48176 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1129.33.1prot_P-littoralis_Contig1129.33.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1129 47493..48176 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1129.33.1

>prot_P-littoralis_Contig1129.33.1 ID=prot_P-littoralis_Contig1129.33.1|Name=mRNA_P-littoralis_Contig1129.33.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=228bp
MAWPGSKAAEFCAQHAKDRMVHIINEKRTQPECTKRPSYGVAGSKAADFC
AQHAKDRMVDIINEKRTHPECTKRPSYGVAGSKTAGFCAQHAKDRMVDII
NDKCAYSECTKRPSYGVAGSKTAGFRAQHPKDGMIDIIHIKRPLYGVDGS
KTAELCAQHATESKVPTWLYRACGESGVGGHQGRRASRFDAKVHPVDPRE
SPKKRSLPSMQCGALSGESSGCSKRLC*
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mRNA from alignment at P-littoralis_Contig1129:47042..48287-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1129.33.1 ID=mRNA_P-littoralis_Contig1129.33.1|Name=mRNA_P-littoralis_Contig1129.33.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1246bp|location=Sequence derived from alignment at P-littoralis_Contig1129:47042..48287- (Pylaiella littoralis U1_48)
AGATCCTTGGGCCAACATCCGTGGACCCTAAGATCCAGCCTAAGGATGGA
ATGATCAAGATCAAAACCTGCAAAAAATGTGCACACCCAGAGTGCACCGA
ACGTCCGTCTGATGGCCTGGCCGGGGAGTAAGGCGGCCGAGTTCTGTGCT
CAGCATGCCAAGGATAGAATGGTCCACATCATCAACGAGAAACGCACACA
ACCAGAGTGCACCAAACGTCCGTCGTACGGAGTGGCCGGGAGTAAAGCAG
CCGACTTCTGCGCTCAGCATGCCAAGGATAGAATGGTCGACATCATCAAC
GAGAAACGCACACACCCAGAGTGCACCAAACGTCCGTCGTACGGAGTGGC
CGGGAGTAAAACGGCCGGGTTCTGCGCCCAGCATGCCAAGGATAGAATGG
TCGACATCATCAACGACAAATGCGCTTACTCAGAGTGCACCAAACGTCCG
TCGTACGGAGTGGCCGGGAGTAAAACGGCCGGGTTCCGCGCTCAGCATCC
GAAGGATGGAATGATCGACATCATCCACATCAAGAGGCCGTTGTACGGTG
TGGACGGAAGCAAAACGGCCGAGTTGTGCGCTCAGCATGCCACGGAGAGT
AAGGTGCCTACGTGGCTTTACAGAGCGTGCGGTGAGAGCGGGGTCGGTGG
TCATCAAGGGCGTCGGGCTTCACGTTTTGATGCGAAGGTGCACCCTGTTG
ACCCACGGGAGTCACCGAAGAAGCGCAGTCTTCCTTCCATGCAATGCGGG
GCTTTATCTGGGGAAAGCTCGGGCTGTAGCAAACGACTTTGCTAGGCCGG
GGTCACTTCTTCTGCCGTTCCTTTGGTGGTGAAGGAAGAGGTCGTGGATA
GCACTTTGACGATGGAGGGGCGAGGGCATCCTTGGGAGCCGGGGGGTTTT
GTGCCGAAGGCCTAGGGAAAGGTCTCGTCCTGATGAGGGTGCGCGCGAGG
AAGCAGGAGGTGCGTTTTAAATTGGTACCAGGTACACTCCAGCACCTGGG
ACAATTCTTTTTGTTGCAGGTTCTGCGTCTTTGAGGTAGGGAAAGAAGCC
GAGACACCAGGGGGTTGGTTCATGCCGCGGTTAAATGCGGTGACTAAATA
GAGGTTAGAAATGGGGTTTCATGGCATGATATATAGTGAAATAGAATAAA
ACGTCAAGTTCTGCGCAGCTGGTACGAGAGAAGTCATTCCGTGACCAAGA
TGATTGTTTTTCGGTCCTGTTGGCATCCCATCTAAAGCAAATTACG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1129:47042..48287-

>mRNA_P-littoralis_Contig1129.33.1 ID=mRNA_P-littoralis_Contig1129.33.1|Name=mRNA_P-littoralis_Contig1129.33.1|organism=Pylaiella littoralis U1_48|type=CDS|length=684bp|location=Sequence derived from alignment at P-littoralis_Contig1129:47042..48287- (Pylaiella littoralis U1_48)
ATGGCCTGGCCGGGGAGTAAGGCGGCCGAGTTCTGTGCTCAGCATGCCAA
GGATAGAATGGTCCACATCATCAACGAGAAACGCACACAACCAGAGTGCA
CCAAACGTCCGTCGTACGGAGTGGCCGGGAGTAAAGCAGCCGACTTCTGC
GCTCAGCATGCCAAGGATAGAATGGTCGACATCATCAACGAGAAACGCAC
ACACCCAGAGTGCACCAAACGTCCGTCGTACGGAGTGGCCGGGAGTAAAA
CGGCCGGGTTCTGCGCCCAGCATGCCAAGGATAGAATGGTCGACATCATC
AACGACAAATGCGCTTACTCAGAGTGCACCAAACGTCCGTCGTACGGAGT
GGCCGGGAGTAAAACGGCCGGGTTCCGCGCTCAGCATCCGAAGGATGGAA
TGATCGACATCATCCACATCAAGAGGCCGTTGTACGGTGTGGACGGAAGC
AAAACGGCCGAGTTGTGCGCTCAGCATGCCACGGAGAGTAAGGTGCCTAC
GTGGCTTTACAGAGCGTGCGGTGAGAGCGGGGTCGGTGGTCATCAAGGGC
GTCGGGCTTCACGTTTTGATGCGAAGGTGCACCCTGTTGACCCACGGGAG
TCACCGAAGAAGCGCAGTCTTCCTTCCATGCAATGCGGGGCTTTATCTGG
GGAAAGCTCGGGCTGTAGCAAACGACTTTGCTAG
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