mRNA_P-littoralis_Contig1129.24.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1129.24.1
Unique NamemRNA_P-littoralis_Contig1129.24.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1129.24.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1129contigP-littoralis_Contig1129:38237..41485 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size192
Hectar predicted targeting categoryother localisation
Exons2
Cds size189
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789456.0570436-CDS-P-littoralis_Contig1129:38238..383941680789456.0570436-CDS-P-littoralis_Contig1129:38238..38394Pylaiella littoralis U1_48CDSP-littoralis_Contig1129 38239..38394 -
1680789456.0688815-CDS-P-littoralis_Contig1129:41452..414851680789456.0688815-CDS-P-littoralis_Contig1129:41452..41485Pylaiella littoralis U1_48CDSP-littoralis_Contig1129 41453..41485 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1129.24.1prot_P-littoralis_Contig1129.24.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1129 38239..41485 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1129.24.1

>prot_P-littoralis_Contig1129.24.1 ID=prot_P-littoralis_Contig1129.24.1|Name=mRNA_P-littoralis_Contig1129.24.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=63bp
LAGEKANPIPPGGRVPFSAREAAPDIVANKLMKGSRFEDGGGRKFVANKI
AGNGDCLFNSVAF
back to top

mRNA from alignment at P-littoralis_Contig1129:38237..41485-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1129.24.1 ID=mRNA_P-littoralis_Contig1129.24.1|Name=mRNA_P-littoralis_Contig1129.24.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3249bp|location=Sequence derived from alignment at P-littoralis_Contig1129:38237..41485- (Pylaiella littoralis U1_48)
CTGGCCGGGGAAAAAGCAAACCCCATCCCCCCGGTGAGTCGTGTTGGACG
TATCATGTCATACAGAAAGGCCTCCGTACATACAAACGAATCCGCATTAT
TCTTCCCTGCTTTCGAAGGAGGTTTGTCCTACTAGTCTAAAATGCAGCTC
AAAAACAGATTTGACCTAGAACACGAGCAGAGAGGTTTTTGCTGTGCTTT
CTGGGAGTACATAGGTGCACATCGATGTGTCTTTGCGTAGTCGGTCACAG
CCCAACTTGCATCCCCCTGTACGTATGTGTGACCTCGGCGAAAGCTGGTG
TTCCGTAGATTACTAGAAAGGGGAAAGGAATTGAGAAGCAGTGTGCGTTG
GAGGGCCGCTTCTCAAATATCTGCCTTACGCCCTGTGCGTTGCTGTTTGT
TGGCGTATGATATGGCTGCTGCTTCACAGCAGTGCTGCTACTGCAGAACA
CAGCTGGTGGTGTGCTGGTGTGCGTGCGCGCCAGCGCAACGAACACAAAA
AGCCTCTCATCATTTTTCACAAAAAAGGGACCCTATTAATAACTCGCCTC
CGACAAGATAGCTGTGCGCACAGGACACGGGCTGCGGTGAACCCAGCAGC
AGTGGGTAGATGCTATTTACCTCATCAGTTGAAGCCCTTGGTCGTAACGA
TCTGTGATGAACTGGTGCCAAAGTGTTGCAAAATGTGGCCAATATCTCGG
ACACACACACAGACAGACACACAGACACCATAAACCTCCAAAATTAAACA
AAGGCACCCCTGTCTCCGCTTTTTGTTTTAGTAGTATTCGCACATACACT
CACACCTGCACATCACGACAAGTCGGTATGAATTCCAAGGAGTTGGACAC
CGAAGTTACACTTCGCTGCGCTCGTGGACTCCTTCTCAATACAAATCTCT
TCGTTCGAGCGTATTCTGATGAGAATCCGGAGAGCACCACTCAAGTGTGC
AGAAGTATGCAGACAGCAGTAGTTGTTGCTCTCTACAGTACTCTCATGCC
GGTGGTGGTGCTGTGCATTTCGATTACAACATCGGTATGATCTTACTCAC
GATACCACAACACAACTTGTAGCTGCCTGCTTTACACAAACGGTACCTCC
ACACGAAGATAGTATCGCCAATTGCAAAGAAGGAAAACTGTCGGAGCGGA
GTCTGAGAAGCTGAGGAGCTCATCCGAGTTCAATGTCGTCGCCCTGCATG
ATATGTAGGTATGTACAACGGCAGAAATCATGGGACTCTGAAAAGGGTGA
GGACTACCAACGCGCCTGAGTTAGGCCGATGTAGGGCACTATCGTGCATT
ACGTTAGAGGCACGGTAGCTCCCGCACTAACTAGCCTTACAATTGTCACA
GCATACGTTTTACGACCGTCTATCCTCTGACTTGCTGGCCGTGCCTCTTC
CTATTCATGTATTGTACCTCCGCCTTGTTAGATTTTAGATGAACGCAGCC
GTAGCTGCGTGGACCCAACCCCATTTCTCAAACTGAAGCAAGCTGTGTTG
TGCCGTTCCTGAAAGCAGCCTGGAAAAACATTGGTCCTCAAAAACACGAA
GCATCGAATGCAGCTGCGGAGGCCGCTGTGTTCGTGTGTTTATATCCCAT
CGGTTTTGGTCACCAGTCTCCACCTTCCTACATACGTTCGGCTTACCAGC
CGCGGTTGGTCTCACACAAGATGATGCATTTCAGGAATTCGAGTTTGTTC
CAAGAGCTCCTTACCCAATTTAACCCAACGCTAAATCCGACGCAACCTCA
TCGGAATCTGCGGTGGAGGAGTGGTTCATCGCGGAATACTCAAACTGAGC
ATGCCGATCAAGCAACGCACACACATTCAGTTCCAACTGTTGTCGACAGC
ACTTTGCCACCACATACTCCCAGCCTTCCATCACAAGACCCATACAACCG
CCGCGTGTCTTCGCACGTGGTGTGGTGTGTGGCAGAGCTGCTTGTGGTTG
TTGGTCGCTTTTATGTTCATCTTGCGCCAAAAGAAAAAACGTTACCTACT
GTTAAGAAGGGCTAGGGGGCCTGCTAACATAGCGAGGAATTCCACAAAAT
GATGGCATGATATATCTTTTATATTTACAAGCCAGCATCCTAGACAACGG
GGCCTTGTGAGGCTGAGTGCCCAAGGTCGTCTGCGGAGCTGTACTTGATC
CTGCCCAACGTTATGGGCACACAACAGAGGGCAGCGAGTTTGCTCATATT
TCGGCGTTGATCGCCAAGTTTTATCTGACCCATGAGGGAAACCAGGGTGT
GTACCTTGGTGGCTGTACAACCCAACAAAATGTGTGAAATTGGTAGCAGC
ACTACAGAGTTGACGATATGGGCTCTAAAACGTGGCCTAAAAGCGCCCCA
AACCATGATGAACTGCATTTGTTTACTAGGTTGAGCATTCTGAAACAGAA
CAACTCGCAATGTTCCTTGGAATCAGCAATACATCGATGACGATCAAAAA
ATGCCCTGAAGGCGACCCAAACCACTCTGGACTCTGTGGTTTAATAGGTT
GAAATTTCCTTGAAAGTTTTGAAGCAAGGACAACATGTCTACCTCGAAAA
ATGTCGCCAACATTTCATTGTTTCGTGCTCCATAACAACTTTTGATCAAA
GTTGTGCACTCGAAGTATTGAATTTCCGAAACCGGTTGAAACTCGGAGGT
TGTGTAGCTTGGTCGATGCACTACCCGACAAACGTAGGTAGAGTTTGGGA
TCAGCACAACAGCTCGTCAACCAGCAGATTGATTTGCATGTGTCACAGGA
AAATTTACGTTGTTCGCTCCATGTAATGATAAAATTGGATAAAATTTGTC
TTGTCGCTTTAAATAAGAAGGCGATTTCATATTGTTTCCTATAGGCAGCA
GCACGTGTCTCCGTTGCCGAGGATGGCATAGTTTAATGAACGTGCGTGGT
TAGGGGCTCACTGTCACGAGGCACCGCGGACAGACAGACTGGCGGAGGAC
CTAAAGCTTAAAACCACGTGCGCATGTGTTCTCCACGAGCCATACAAACT
CCAAAACGTGTGTGACTCGATGATTCATAACTGCAGTTCTTCGTACGTCG
CCTACCGTGCGCACGGGTGCGTACTACTGTAAACCTGCCAGGGCGGGAGA
GTCCCATTCTCCGCGCGCGAGGCGGCACCTGATATAGTGGCGAACAAGCT
AATGAAGGGATCGAGGTTCGAGGATGGCGGAGGTCGCAAATTTGTTGCCA
ACAAAATCGCGGGTAACGGCGATTGCTTGTTCAACTCGGTTGCGTTCGC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1129:38237..41485-

>mRNA_P-littoralis_Contig1129.24.1 ID=mRNA_P-littoralis_Contig1129.24.1|Name=mRNA_P-littoralis_Contig1129.24.1|organism=Pylaiella littoralis U1_48|type=CDS|length=189bp|location=Sequence derived from alignment at P-littoralis_Contig1129:38237..41485- (Pylaiella littoralis U1_48)
CTGGCCGGGGAAAAAGCAAACCCCATCCCCCCGGGCGGGAGAGTCCCATT
CTCCGCGCGCGAGGCGGCACCTGATATAGTGGCGAACAAGCTAATGAAGG
GATCGAGGTTCGAGGATGGCGGAGGTCGCAAATTTGTTGCCAACAAAATC
GCGGGTAACGGCGATTGCTTGTTCAACTCGGTTGCGTTC
back to top