mRNA_P-littoralis_Contig1.436.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1.436.1
Unique NamemRNA_P-littoralis_Contig1.436.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1.436.1 vs. uniprot
Match: D8LBP6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBP6_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 9.350e-11
Identity = 53/134 (39.55%), Postives = 79/134 (58.96%), Query Frame = 2 
Query:  170 SEVSEYEDDPFYGRQWATVFPEVKKGPPAADDGDTPQMPPVYGP-KRRTLSRSRVLASHKRRWRQSRTAALNDSIDSSPSSPPQRQAPVAAVSFLTPVPKARATGEPVLASPVRTVGDLIIADKMTEQRRKLKQ 568
            S+  EY  DPFYG+ W T  P+V+ G      GD  + PPV GP +RR LSRSRVLAS K+RW Q+R    +  +D +P+S     A  A  + L  + + RA  +P ++    TVGD+++ +K  E+R++ K+
Sbjct:  329 SQDVEYGFDPFYGKPWGTEVPKVRPGV-----GDASETPPVTGPTRRRPLSRSRVLASRKKRWNQNRGGGPDIRVDYTPNSVSLDDAGEAVSAPLASLGR-RAAEDPRVSRSAATVGDMVMKEKEMEKRQQTKK 456
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BLAST of mRNA_P-littoralis_Contig1.436.1 vs. uniprot
Match: A0A6H5KNP7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNP7_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 6.240e-9
Identity = 52/135 (38.52%), Postives = 75/135 (55.56%), Query Frame = 2 
Query:  170 SEVSEYEDDPFYGRQWATVFPEVKKGPPAADDGDTPQMPPVYGP-KRRTLSRSRVLASHKRRWRQSRTAALNDSIDSSPSSPPQRQAPVAAVSFLTPVPKARATGE-PVLASPVRTVGDLIIADKMTEQRRKLKQ 568
            S+  EY  DPFYG+ W T  P+V+ G      GD  + PP  GP +RR LSRSRVLAS K+RW Q R    +   D  P+S     A  A  +   P+   R T E P ++    TVGD+++ +K  E+++++K+
Sbjct:  141 SQDVEYGFDPFYGKPWGTEVPKVRPGV-----GDASETPPASGPTRRRPLSRSRVLASRKKRWNQKRGGGPDFRFDYMPNSLSLDDAGEAVSA--PPMSLGRRTAEDPRVSRSAATVGDMVMEEKEMEKQQQVKE 268
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1.436.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LBP6_ECTSI9.350e-1139.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KNP7_9PHAE6.240e-938.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1contigP-littoralis_Contig1:1878447..1881676 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LBP6
PFAMsMgtC
Model size3022
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.7e-06
EggNOG OGsCOG1285@1|root,2S8UQ@2759|Eukaryota
DescriptionMgtC family
Cds size447
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789325.1262224-UTR-P-littoralis_Contig1:1878446..18807411680789325.1262224-UTR-P-littoralis_Contig1:1878446..1880741Pylaiella littoralis U1_48UTRP-littoralis_Contig1 1878447..1880741 -
1680789325.146512-UTR-P-littoralis_Contig1:1881188..18812331680789325.146512-UTR-P-littoralis_Contig1:1881188..1881233Pylaiella littoralis U1_48UTRP-littoralis_Contig1 1881189..1881233 -
1680789325.1546433-UTR-P-littoralis_Contig1:1881441..18816761680789325.1546433-UTR-P-littoralis_Contig1:1881441..1881676Pylaiella littoralis U1_48UTRP-littoralis_Contig1 1881442..1881676 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789325.1366608-CDS-P-littoralis_Contig1:1880741..18811881680789325.1366608-CDS-P-littoralis_Contig1:1880741..1881188Pylaiella littoralis U1_48CDSP-littoralis_Contig1 1880742..1881188 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1.436.1prot_P-littoralis_Contig1.436.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1 1880742..1881188 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1.436.1

>prot_P-littoralis_Contig1.436.1 ID=prot_P-littoralis_Contig1.436.1|Name=mRNA_P-littoralis_Contig1.436.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=149bp
MPPVYGPKRRTLSRSRVLASHKRRWRQSRTAALNDSIDSSPSSPPQRQAP
VAAVSFLTPVPKARATGEPVLASPVRTVGDLIIADKMTEQRRKLKQKQQQ
QQEQQQSPTKNEKPKGPKEEQQESVAEVASPAKARDTDAGADYPPVSP*
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mRNA from alignment at P-littoralis_Contig1:1878447..1881676-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1.436.1 ID=mRNA_P-littoralis_Contig1.436.1|Name=mRNA_P-littoralis_Contig1.436.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3230bp|location=Sequence derived from alignment at P-littoralis_Contig1:1878447..1881676- (Pylaiella littoralis U1_48)
GGAGGGCGAAACGGTGAAAGCCGAGGCGCCCGCCGTTCGTGCAGCGCAGG
AAGCCAGCGGCCGGTCGTCGTCGTCGTCGTCGTCGTCAAACGAGACCGGC
GATGAGACGGAAGACGACAGCTTTGACGATGAAGATGAGGAAAACTACCG
GATCCTGAACCGCGACCTGTCGGAGGTGTCGGAGTACGAGGACGACCCGT
TCTACGGTAGGCAGTGGGCCACTGTGTTTCCGGAGGTGGGAGAACGCGTA
TCGTATTGCTGCTGTACAGTAGTGCGAGCGAGAACTTGACAATCACACCG
GGAGTACAAAGTCTACCTGTATGAAGCATCAAAACTTTGCGAACGACGAG
ATGTTTTCGGTCCAAACCTGCATGCATGACGCCCAAAAGTGCACCATGCT
ACTGTGTTGCTGTTTTGTTTTCTTTCCTCACGTCCCAAACTAGGTGAAGA
AAGGGCCGCCAGCCGCCGACGACGGGGACACTCCGCAAATGCCCCCGGTT
TATGGTCCGAAGCGAAGGACTCTGTCGCGCAGCCGCGTCTTAGCCTCGCA
CAAGAGGCGATGGCGTCAAAGCCGGACCGCCGCGCTCAACGATTCGATCG
ACTCCTCGCCGAGCTCGCCGCCGCAGCGGCAGGCACCAGTGGCGGCCGTA
TCTTTTCTCACCCCTGTGCCAAAGGCAAGAGCAACGGGTGAACCGGTTTT
GGCTAGTCCTGTGAGAACCGTCGGAGACTTGATCATCGCAGATAAAATGA
CGGAGCAACGACGGAAGCTAAAACAGAAGCAGCAGCAGCAACAAGAACAA
CAACAATCGCCGACGAAGAATGAGAAGCCTAAGGGCCCCAAGGAGGAGCA
GCAGGAAAGCGTGGCAGAGGTTGCTTCGCCTGCGAAGGCCAGGGATACCG
ACGCCGGCGCTGATTACCCGCCAGTGTCCCCGTGAGTCCCGCCCGCTAAG
GAATCCGCCAAAGGAGTTGCTCCTCCTTTGGTTTTGTCAGGACGGACTGT
GCCAAGGTGGCGGTGATAGCGGTAGCGGCTCTGACTCTCAAATGGCGGAG
GAGCGAGAAGGAAGTCAAGACGCTGCCATAGGAGGTGACCAAAGCTGAAG
ACGGCGATGGCGGAGAAGGGCGACAGCAGCCCCAGCAGCGGCTCTGGACC
CCGAGATAGAGGAGAGTGTTCACGGGTGTGGGCGCGCTGCGTCGATGGCG
TCTTTTACCCATTGATTCTGAAAAAGCGTCAACCAACCAGTCTTCCAACG
ACAACAAGGGCAGCAGCCGGGGCGGCGCTGAATTTGGTAAGAAAAAGGCT
TGAGGTCCGTCAAAGCGTGAGGCCTACACGGCGCTAATGCAGACGACGGT
CAAAGGCTCCTTACTTGTGGGCGGGTTGGATAAAACACAGCAGTGAATGC
CAGCAAGAGAGGGGTACGTAGAGACGAGAGGTCACCAGTCCTGAAAGGAC
GATAGCGGATCTCGGCGACATCGTTGGTGGTGCTGCTCGCTGGTGATGCT
GCTCGCTGGCGGTGATCGCGCCAAGCCCGCCGCGGCCCGATCGAGACGAT
AGTGATCGCCGAAGCTCGTCCGGGGGGGAGGGGGGGGGTGGCGGGTGGCT
GGACGTAGAGGCGGGGGGCTTACGAATGGGGTGGGTGCACGGCGTTATGA
AGTGTTTCGATGGTCGTCCAGAATTACCTCTATTTCACCGAGGGTACGTT
CATTTTGGTGGCGAATGCGCGGGGTGGGGTCATTGCCTTTATTTTCCAAG
CAGCTTTGGAAACACAGGAAGCACGGCGATGAAATAAAATGCCTTGGGCT
CAAATCAGATATGTGTGTGGCGTTATCTCTCGCCTTTTCCCTAGTGGCGT
GAGAGCATTATACCGAGGGGCTGAGTAAAGTACTTCGTACACTTCAATGT
CGGGGTAGGCTGACGGTCGCGGTATGAACGCACGGAGCACTCTAGTTGGT
GACCCAACCGTCCGACTTCCCCCTCGATTGTTCAGTACAAGACGGTACAC
ACCCGCCATCAAAGTCTGGTCCTGTTTTCATGCAAAGTTCAAAAATGGTG
GTACGAGTAGACACTTCCGTATATACTTCGCATTTATGTGCCAAATATGT
TTCGTGCACAGTGATCGAGAGCTCGAGGCCCGTGGGATACGGCGCTCCTC
GCCTCGCCTGGACATTTTTATTTGGGATGGTTTTCTTTTTTAAGAAACGT
CGCACGCATATACAACTTTTGCCCGTCTTCTTGTCTCATCGTCCCCTGTG
TCGATTTTTTTTTCGTTTTTCTCTCACTACGACCATCTGCACAGATGCCT
GCTTTGACGTCGTCATCATGTACTTGTACGCAGGGTGTGTATGCTGTTTG
TTGTACCTCACCTACTGCTGGTAGGAGTAGGTTGTTGTCGTCGTTGGTGA
GCCTGCTTTATTTGTGTTAAGTTAATTCTCTTCCTTAGAGTGTTGTATGC
TCTTGTTGGCTCGGTTTGCCCCTGCAGGTCAGTTCAGCGATGTATGTATG
TGTCCGGAGGTAAATCCCCTTCAAATTTGCACTTGTAGAGATCGAATACT
GAGGGCAGTTGTCACGGAATATTTGTTTTACATTTTTCTCTCTCACGCAC
CAAGCTTTGTTTGGCAGTGAAATTTGCTCTGCAGGTCGTGAACGAGTGTT
GTACAAATTCGGTAAGTTGAAGACGGCGCTGCTTTACTCGTGCTATGGTT
TATGAAGGTTCCGTGTCGCGTGCGCACACGTGAATTATTTGTGGGGGCTT
CCGGAGTGCCCTCACCCGAAATACACGCACAGAACGCGCTCGTGTGATGT
GCTTCTGTTGGCGCCAGTTGTAGCTTCGCGCCGTTTTCTCTTGTGGGGTA
TCCAACAGCTGATTACAGGAGGAGCGAGGCAGTGTGGCACAGCCGGCGGA
GGAGGAGAGATTTTTTGGTCTGCGGCAGTGTTATGTGGTGTGTCCAGTCG
GTGAAAAAACAAACCTTGGAGTTTCGCCATGACCAAATTTCAGTACTGTA
CGTACAGGGATCTCTTCCTTTTGTACCGGAAGGTATAAACTGCCGGTGTC
TTTCAAGTAAGAGCGGTTTTGTTTCGTTTTTCACCGCTCTTTCACCGGGG
GGTCTTGGATTTTTTTGTTTCCCGGGCGGTAGGCGCCGGCGGCGTGTTGC
TGCTTCATCTCGTACGTTTCGGGCAGCAGCAACGTACTGACTGGTGGTGC
ACTAGAATCAGGACGAACGCATCGTCCGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1:1878447..1881676-

>mRNA_P-littoralis_Contig1.436.1 ID=mRNA_P-littoralis_Contig1.436.1|Name=mRNA_P-littoralis_Contig1.436.1|organism=Pylaiella littoralis U1_48|type=CDS|length=447bp|location=Sequence derived from alignment at P-littoralis_Contig1:1878447..1881676- (Pylaiella littoralis U1_48)
ATGCCCCCGGTTTATGGTCCGAAGCGAAGGACTCTGTCGCGCAGCCGCGT
CTTAGCCTCGCACAAGAGGCGATGGCGTCAAAGCCGGACCGCCGCGCTCA
ACGATTCGATCGACTCCTCGCCGAGCTCGCCGCCGCAGCGGCAGGCACCA
GTGGCGGCCGTATCTTTTCTCACCCCTGTGCCAAAGGCAAGAGCAACGGG
TGAACCGGTTTTGGCTAGTCCTGTGAGAACCGTCGGAGACTTGATCATCG
CAGATAAAATGACGGAGCAACGACGGAAGCTAAAACAGAAGCAGCAGCAG
CAACAAGAACAACAACAATCGCCGACGAAGAATGAGAAGCCTAAGGGCCC
CAAGGAGGAGCAGCAGGAAAGCGTGGCAGAGGTTGCTTCGCCTGCGAAGG
CCAGGGATACCGACGCCGGCGCTGATTACCCGCCAGTGTCCCCGTGA
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