mRNA_P-littoralis_Contig1128.6.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1128.6.1
Unique NamemRNA_P-littoralis_Contig1128.6.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1128.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1128contigP-littoralis_Contig1128:19645..20260 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size616
Hectar predicted targeting categoryother localisation
Exons1
Cds size351
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789455.682454-UTR-P-littoralis_Contig1128:19644..198891680789455.682454-UTR-P-littoralis_Contig1128:19644..19889Pylaiella littoralis U1_48UTRP-littoralis_Contig1128 19645..19889 +
1680789455.7133045-UTR-P-littoralis_Contig1128:20240..202601680789455.7133045-UTR-P-littoralis_Contig1128:20240..20260Pylaiella littoralis U1_48UTRP-littoralis_Contig1128 20241..20260 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789455.6929424-CDS-P-littoralis_Contig1128:19889..202401680789455.6929424-CDS-P-littoralis_Contig1128:19889..20240Pylaiella littoralis U1_48CDSP-littoralis_Contig1128 19890..20240 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1128.6.1prot_P-littoralis_Contig1128.6.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1128 19890..20240 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1128.6.1

>prot_P-littoralis_Contig1128.6.1 ID=prot_P-littoralis_Contig1128.6.1|Name=mRNA_P-littoralis_Contig1128.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=117bp
MTARPSGATSHDEEDTLFDAPVIGPELPRLLGVPPSTSDEAAVLLLWEHA
KRSPETIRDRVKDLAKELATAAGCPHGPELVTFSQNKRAARTCGQHQAHV
LAALSMQARCHSCIIA*
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mRNA from alignment at P-littoralis_Contig1128:19645..20260+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1128.6.1 ID=mRNA_P-littoralis_Contig1128.6.1|Name=mRNA_P-littoralis_Contig1128.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=616bp|location=Sequence derived from alignment at P-littoralis_Contig1128:19645..20260+ (Pylaiella littoralis U1_48)
ACTGCTGTCCCCAGCGCGAAGCGTGCCCGGAAGTCTTCGATGGGCACGAA
GAGGACCATGGCCGAAGAGGGAAACGGGGCAAGGTTTGAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGGAGCACCAGCACCAGCAGGGCAGCAGGACG
AGAGAGAACCAAAGGAAGAGGAGTCGGATGGCCCGCATGCGCCAGAGGGC
CGGAAAGACGGAGCAGCACCTGCCGAAACACCGGTAGTTCGATCGATGAC
TGCCCGCCCTTCCGGTGCTACTTCCCATGATGAGGAAGACACTCTGTTTG
ACGCGCCGGTGATCGGGCCCGAGTTGCCGAGGCTACTGGGTGTGCCTCCA
AGCACCAGCGATGAGGCTGCGGTACTCCTCCTGTGGGAGCACGCGAAACG
CAGTCCCGAGACCATCCGCGACAGGGTGAAGGATCTGGCGAAGGAGTTAG
CCACCGCAGCAGGCTGCCCTCATGGACCGGAACTTGTGACCTTCAGCCAG
AACAAAAGAGCGGCGCGGACCTGCGGGCAGCACCAAGCTCATGTTCTGGC
GGCGCTGAGCATGCAGGCAAGGTGTCATAGCTGTATCATAGCATAGGTAA
AAACCAAAGTCGTAGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1128:19645..20260+

>mRNA_P-littoralis_Contig1128.6.1 ID=mRNA_P-littoralis_Contig1128.6.1|Name=mRNA_P-littoralis_Contig1128.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=351bp|location=Sequence derived from alignment at P-littoralis_Contig1128:19645..20260+ (Pylaiella littoralis U1_48)
ATGACTGCCCGCCCTTCCGGTGCTACTTCCCATGATGAGGAAGACACTCT
GTTTGACGCGCCGGTGATCGGGCCCGAGTTGCCGAGGCTACTGGGTGTGC
CTCCAAGCACCAGCGATGAGGCTGCGGTACTCCTCCTGTGGGAGCACGCG
AAACGCAGTCCCGAGACCATCCGCGACAGGGTGAAGGATCTGGCGAAGGA
GTTAGCCACCGCAGCAGGCTGCCCTCATGGACCGGAACTTGTGACCTTCA
GCCAGAACAAAAGAGCGGCGCGGACCTGCGGGCAGCACCAAGCTCATGTT
CTGGCGGCGCTGAGCATGCAGGCAAGGTGTCATAGCTGTATCATAGCATA
G
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