prot_P-littoralis_Contig1.423.17 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig1.423.17
Unique Nameprot_P-littoralis_Contig1.423.17
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length1087
Homology
BLAST of mRNA_P-littoralis_Contig1.423.17 vs. uniprot
Match: D8LU32_ECTSI (DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LU32_ECTSI)

HSP 1 Score: 291 bits (745), Expect = 4.910e-79
Identity = 250/759 (32.94%), Postives = 341/759 (44.93%), Query Frame = 0
Query:   51 NPYRSISRVLCGGTKLDCITPCNKKLGGVKCYPPRSEKRLVFFQHTALLVNGAQPKSWEAVRNDITXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRARRFEPKKRPPLVRSVVFAPGAVHTAGGGRDKVXXXXXXXXAEWRAMTKTHPRPYQAKLSRAVIECERNSLTYLPPGTALGRTLVAASVMQRLLELNSDRQAFFLVETDARAMQQAAKLRKELHAAIS-LDVMMGVSVGMQQLSRSGGGXXXXXXXXXXXXVGDDERKMHQTKAALRVRSRLASLRKARVVVATACAFEHAICQRYLDPASICCVVMDEAHPCDRGHPLFRISMSPYLVPNCGAMSVMSARRRKRKDDQTGSFGCFNPRTAAEFPKVLALVSSRAGRGTMSDTVRRVTELMGRLRADLVAPEDTLKEAKERTPRVPVELVCVPTTASESLLLAYLEKIILRRVTDLAP-GSDAAIKALELRAVVDARERRAGVVQATAGEGAAAVTDDDHDDGRDEEHRSSWSQFPSQAYRALCEQAL-AGNTEKRALKGEEPPT----GCSEMPAKGEGDGLHLISLMDLAFAEEEGAAAAA---------KGWNEHEALDVGR-------ELDDAAHVLKSFFPAHSFMASDDDWDDSSSSGDWAWNGRRGASGGRAGAAPAGEGWAGGENALAGSKLEKVVQLLQEQNERCELKGRDKNGRRRAGPPLRFSALVLVSTRESARAAPDILE 786
            NPYRS++ VLC   + D    CNKK+GGVKCYPP S+ +L+FFQ  ALLV+   PKSW+ VR                                                              +  R+F P++ P L +S+          GGG D               +T++ PR YQ +L  AV+ECERNSL YLP G  LG+TLVAA V++++L+ N +RQA+FLVET A AMQQ  +L+ EL   +  +++++G S     L   GG                   K  +    L    +L  +R A +VVATA AFEH +C+RY+DP +ICCVV+DEAH C + HP  R++ S   +    ++                      P  A EFPK++AL +S AG  ++ DT  R+ +L+ RL ADL AP   L+E K  TP V +EL+ V  TASE+ LL  LEK++L R+  LAP  S+A  +A  L   +  R R           GAAA        G D   +     FP++ + ALC++AL AG  E+R    E   T    G          +   L SLM+L+FA +E    A           GW    +   G        EL++   VLK    A + ++  D              G   ASGG A                 GSKL K+  LL+E    C+  G+            RFSALV VS RE A A P +LE
Sbjct:  113 NPYRSVAYVLCANRRPDNGQQCNKKVGGVKCYPPLSDNQLIFFQQKALLVDHQHPKSWKNVRES-----------------------------------------------SLRKVKLLPAGKEEEERQFTPRQWPTLRKSLAGGSNDPGHGGGGMD---------------LTRSTPRGYQEELFDAVMECERNSLVYLPTG--LGKTLVAAMVLKQMLDWNPERQAYFLVETTALAMQQTTRLQNELGGTVKKIEMLVGSS-----LQAFGG-------------------KRGKIDHGL---VKLECVRDANIVVATAGAFEHCMCKRYIDPDAICCVVLDEAHHCGKEHPFNRVARSFLTMKAFPSVQA-------------------TPDRAKEFPKLVALTASPAGELSVHDTTVRINQLLDRLEADLAAPVQHLQEVKSLTPSVDLELLNVTATASETTLLGCLEKLVLSRLVGLAPEASEAHAQAQSLLDSLGGRMR-----------GAAAAATASTAAGADVPRKDDAWVFPNKFFTALCQRALSAGGAEQREGWWESDGTVMDEGSXXXXXXXXXEASQLHSLMNLSFAVDEIGGEAIWQRALEELDNGWTSGSSSSSGEGNDFSDPELEETIGVLKENLSAVATVSGSD-------------GGSAAASGGDA------------VRRAGGSKLAKIAWLLEEHKRACDASGK------------RFSALVFVSRRELALATPAMLE 713          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1.423.17 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LU32_ECTSI4.910e-7932.94DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 338..523
e-value: 2.3E-7
score: 32.4
coord: 221..321
e-value: 4.9E-9
score: 37.9
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 220..425
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 560..586
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 973..987
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 568..585
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 969..991
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1048..1086
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 319..344
NoneNo IPR availablePANTHERPTHR14074:SF16ATP-DEPENDENT RNA HELICASE DDX58-RELATEDcoord: 176..906
NoneNo IPR availablePANTHERPTHR14074HELICASE WITH DEATH DOMAIN-RELATEDcoord: 176..906

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1contigP-littoralis_Contig1:1844061..1855612 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1.423.17mRNA_P-littoralis_Contig1.423.17Pylaiella littoralis U1_48mRNAP-littoralis_Contig1 1839523..1857397 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig1.423.17 ID=prot_P-littoralis_Contig1.423.17|Name=mRNA_P-littoralis_Contig1.423.17|organism=Pylaiella littoralis U1_48|type=polypeptide|length=1087bp
MPCEAALRREQRGRCGTGQPGGAEGKKTGFRLKDVSEAQMKKGAGGSTRL
NPYRSISRVLCGGTKLDCITPCNKKLGGVKCYPPRSEKRLVFFQHTALLV
NGAQPKSWEAVRNDITTTTATSAAAAAAADNNSTSISSRGGNGQGGDSEA
AAAAAAAASATPLFIIPLMAASKEDRARRFEPKKRPPLVRSVVFAPGAVH
TAGGGRDKVGGAAAAAAAEWRAMTKTHPRPYQAKLSRAVIECERNSLTYL
PPGTALGRTLVAASVMQRLLELNSDRQAFFLVETDARAMQQAAKLRKELH
AAISLDVMMGVSVGMQQLSRSGGGGGSGGEGGAGGDVGDDERKMHQTKAA
LRVRSRLASLRKARVVVATACAFEHAICQRYLDPASICCVVMDEAHPCDR
GHPLFRISMSPYLVPNCGAMSVMSARRRKRKDDQTGSFGCFNPRTAAEFP
KVLALVSSRAGRGTMSDTVRRVTELMGRLRADLVAPEDTLKEAKERTPRV
PVELVCVPTTASESLLLAYLEKIILRRVTDLAPGSDAAIKALELRAVVDA
RERRAGVVQATAGEGAAAVTDDDHDDGRDEEHRSSWSQFPSQAYRALCEQ
ALAGNTEKRALKGEEPPTGCSEMPAKGEGDGLHLISLMDLAFAEEEGAAA
AAKGWNEHEALDVGRELDDAAHVLKSFFPAHSFMASDDDWDDSSSSGDWA
WNGRRGASGGRAGAAPAGEGWAGGENALAGSKLEKVVQLLQEQNERCELK
GRDKNGRRRAGPPLRFSALVLVSTRESARAAPDILENAVAAASAVRTAAA
AAAPPATTLAVSPSSCSSLSILPSSETIASIPAAAAAAAVVAAGVAAGAT
KNVKPPSPSSFVKAVCVVGTPDMDPADQVDALEAFETGAANVLVSTPEYY
EGGGVQQVPAGALVVVCHSPSASPATGSGSTSKETTAAAEDDDQLAGLRG
CIRCEGRYRFVGLTRTDQTDVLQNSDDQEEEAEENEQEEGRMVTGMDAAT
HLRGTNMLRAIEHLKAGVASTSSAAVSGDDGDVSAMCGRGSSNGSSFAST
STMTSTNTSAGIGTSTGRSTGEITSSPVTSLGSRCP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase