mRNA_P-littoralis_Contig1123.20.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1123.20.1
Unique NamemRNA_P-littoralis_Contig1123.20.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1123.20.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1123contigP-littoralis_Contig1123:52183..52675 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size493
Hectar predicted targeting categoryother localisation
Exons1
Cds size300
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789453.4622326-UTR-P-littoralis_Contig1123:52182..523131680789453.4622326-UTR-P-littoralis_Contig1123:52182..52313Pylaiella littoralis U1_48UTRP-littoralis_Contig1123 52183..52313 +
1680789453.4889007-UTR-P-littoralis_Contig1123:52613..526751680789453.4889007-UTR-P-littoralis_Contig1123:52613..52675Pylaiella littoralis U1_48UTRP-littoralis_Contig1123 52614..52675 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789453.4787154-CDS-P-littoralis_Contig1123:52313..526131680789453.4787154-CDS-P-littoralis_Contig1123:52313..52613Pylaiella littoralis U1_48CDSP-littoralis_Contig1123 52314..52613 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1123.20.1prot_P-littoralis_Contig1123.20.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1123 52314..52613 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1123.20.1

>prot_P-littoralis_Contig1123.20.1 ID=prot_P-littoralis_Contig1123.20.1|Name=mRNA_P-littoralis_Contig1123.20.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=100bp
MTDVYEQPVESEVDAGNGSSGEEDDDASSDDGDDGWNSCVLRQQQLLRQR
GGVVESMDPSERGFGGLGGGDGDPNAGTFSQLMHPFDRGKSSHLRRFVW*
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mRNA from alignment at P-littoralis_Contig1123:52183..52675+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1123.20.1 ID=mRNA_P-littoralis_Contig1123.20.1|Name=mRNA_P-littoralis_Contig1123.20.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=493bp|location=Sequence derived from alignment at P-littoralis_Contig1123:52183..52675+ (Pylaiella littoralis U1_48)
GAGGACATGGGGTTCTGCTCTCCCGCCGTGTCACTGCTGTGCACGGTGCG
AGAAACACTGACGACGACGGGCGAGAGTACGTTGCGGCCGTCTCGACAGG
CCCTCAGAGTGCGTTACCCCCTGCGGCAGGAATGACAGATGTGTATGAGC
AACCAGTTGAGTCGGAGGTGGATGCAGGGAACGGCAGCAGTGGCGAAGAG
GATGATGATGCTAGTAGTGATGATGGCGATGACGGTTGGAACAGCTGTGT
TTTGCGGCAGCAGCAGTTACTGCGGCAACGCGGCGGCGTGGTGGAGTCCA
TGGACCCATCGGAGAGAGGTTTTGGCGGTTTAGGGGGCGGCGACGGTGAC
CCCAATGCTGGGACGTTTTCGCAGCTCATGCACCCGTTTGATCGGGGCAA
GAGTTCGCATTTGCGGCGGTTTGTATGGTGATGAACTTCATGCTCGGGGA
ACAATTATGAGTGGTACACGTCCATTTGATCGGGCCAATGGCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1123:52183..52675+

>mRNA_P-littoralis_Contig1123.20.1 ID=mRNA_P-littoralis_Contig1123.20.1|Name=mRNA_P-littoralis_Contig1123.20.1|organism=Pylaiella littoralis U1_48|type=CDS|length=300bp|location=Sequence derived from alignment at P-littoralis_Contig1123:52183..52675+ (Pylaiella littoralis U1_48)
ATGACAGATGTGTATGAGCAACCAGTTGAGTCGGAGGTGGATGCAGGGAA
CGGCAGCAGTGGCGAAGAGGATGATGATGCTAGTAGTGATGATGGCGATG
ACGGTTGGAACAGCTGTGTTTTGCGGCAGCAGCAGTTACTGCGGCAACGC
GGCGGCGTGGTGGAGTCCATGGACCCATCGGAGAGAGGTTTTGGCGGTTT
AGGGGGCGGCGACGGTGACCCCAATGCTGGGACGTTTTCGCAGCTCATGC
ACCCGTTTGATCGGGGCAAGAGTTCGCATTTGCGGCGGTTTGTATGGTGA
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