mRNA_P-littoralis_Contig1123.14.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1123.14.1
Unique NamemRNA_P-littoralis_Contig1123.14.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1123.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1123contigP-littoralis_Contig1123:48242..49399 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size591
Hectar predicted targeting categoryother localisation
Exons2
Cds size471
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789453.4122763-CDS-P-littoralis_Contig1123:48241..487121680789453.4122763-CDS-P-littoralis_Contig1123:48241..48712Pylaiella littoralis U1_48CDSP-littoralis_Contig1123 48242..48712 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789453.4250631-UTR-P-littoralis_Contig1123:48712..487141680789453.4250631-UTR-P-littoralis_Contig1123:48712..48714Pylaiella littoralis U1_48UTRP-littoralis_Contig1123 48713..48714 -
1680789453.4352827-UTR-P-littoralis_Contig1123:49282..493991680789453.4352827-UTR-P-littoralis_Contig1123:49282..49399Pylaiella littoralis U1_48UTRP-littoralis_Contig1123 49283..49399 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1123.14.1prot_P-littoralis_Contig1123.14.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1123 48242..48712 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1123.14.1

>prot_P-littoralis_Contig1123.14.1 ID=prot_P-littoralis_Contig1123.14.1|Name=mRNA_P-littoralis_Contig1123.14.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=157bp
MDAPLPSPLALATKRQQQRNHPPQHTVNKKVRPMPASNNTEKPNIAAVSW
DAMPRCMLSEIGKFAGKRSSLSRASRTTLKAIPAAEVHLKIDTVRKYKSF
FEQGFYDEGFCGEESQSSLIDPATGGLKSGRVVAHITVTAAMTSRRSEET
PPPWHSE
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mRNA from alignment at P-littoralis_Contig1123:48242..49399-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1123.14.1 ID=mRNA_P-littoralis_Contig1123.14.1|Name=mRNA_P-littoralis_Contig1123.14.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1158bp|location=Sequence derived from alignment at P-littoralis_Contig1123:48242..49399- (Pylaiella littoralis U1_48)
CCCCAACCTGCCCCCACTCCCTCCACACGCACACCACTACTACAACAAAG
CGCGGAGGCAACCAAGACAACAATAGCGCGCGATAAGCTCAGCACGCACC
GCCTCGTTTGAATTCAGGTGCGTGGCGTTCCTTTCGTCGGGGGTGATGTC
GAGGTGGAGAGAATGATGGAGTTGTACTTCGTAATATGCGATGTACAGCA
ATGCGTACACCAACCAGGATGATGACGAGGTCACATGTGATAGAGTTCGT
CTCGAAAAGCTCCGTCGTCACTTGCAGCAGTGCCTAAGACGCGCCGGCAA
GAAACTTCGAGAGGTGGCCGAAGACGTCGGATTATTCGTCATATCTCTCA
TATCTCTCTGTGTGTCTCTCGCACACACTCTCGCTCTGTGCAGTACCTTA
CCGTCTACAGCCAGCGCCACAGATCCAGCAGCTATCTAACGCAGGACGTA
TGTTTGGCTTGCGTGTGTACGACAAGGTGCTCTGCAATCATCGTGTCAAC
TGTCTACATCATACTGTACCAGCATTTTGAAAGGCACAAGTCTTTTACAC
CGGATATCGTCGTGCTTTTTTAACAGTTACACTGCTGTCTCTCAGGTTCT
GCCTATCTATGAGCTGTTTCAAGTGTAGAATCATTCTTCACGCCTCCCAA
CCTCACTGCCCCACTGTGTCCCGCTTTATTTCCAGTCATGGACGCCCCTT
TACCATCACCTCTCGCCCTGGCAACCAAACGGCAACAACAACGCAATCAC
CCCCCTCAGCACACGGTCAACAAGAAGGTTCGTCCCATGCCTGCTTCAAA
CAATACCGAGAAACCGAACATAGCAGCGGTGTCTTGGGACGCCATGCCTC
GTTGCATGCTCAGCGAAATCGGAAAGTTTGCTGGGAAGAGAAGCTCTCTC
AGCCGGGCCTCCAGGACCACCCTCAAGGCCATTCCTGCTGCTGAGGTACA
CCTCAAGATTGATACCGTGAGGAAGTATAAAAGTTTCTTCGAGCAGGGTT
TCTACGACGAGGGTTTCTGTGGCGAGGAGTCCCAGTCGTCCTTGATCGAC
CCCGCCACCGGAGGGCTGAAGTCGGGCAGGGTAGTTGCGCATATCACCGT
AACAGCAGCCATGACTTCTCGGCGTTCTGAGGAAACTCCTCCTCCTTGGC
ACTCCGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1123:48242..49399-

>mRNA_P-littoralis_Contig1123.14.1 ID=mRNA_P-littoralis_Contig1123.14.1|Name=mRNA_P-littoralis_Contig1123.14.1|organism=Pylaiella littoralis U1_48|type=CDS|length=471bp|location=Sequence derived from alignment at P-littoralis_Contig1123:48242..49399- (Pylaiella littoralis U1_48)
ATGGACGCCCCTTTACCATCACCTCTCGCCCTGGCAACCAAACGGCAACA
ACAACGCAATCACCCCCCTCAGCACACGGTCAACAAGAAGGTTCGTCCCA
TGCCTGCTTCAAACAATACCGAGAAACCGAACATAGCAGCGGTGTCTTGG
GACGCCATGCCTCGTTGCATGCTCAGCGAAATCGGAAAGTTTGCTGGGAA
GAGAAGCTCTCTCAGCCGGGCCTCCAGGACCACCCTCAAGGCCATTCCTG
CTGCTGAGGTACACCTCAAGATTGATACCGTGAGGAAGTATAAAAGTTTC
TTCGAGCAGGGTTTCTACGACGAGGGTTTCTGTGGCGAGGAGTCCCAGTC
GTCCTTGATCGACCCCGCCACCGGAGGGCTGAAGTCGGGCAGGGTAGTTG
CGCATATCACCGTAACAGCAGCCATGACTTCTCGGCGTTCTGAGGAAACT
CCTCCTCCTTGGCACTCCGAG
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