mRNA_P-littoralis_Contig1120.14.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1120.14.1
Unique NamemRNA_P-littoralis_Contig1120.14.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1120.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1120contigP-littoralis_Contig1120:47356..48110 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size468
Hectar predicted targeting categoryother localisation
Exons2
Cds size444
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789452.2991073-UTR-P-littoralis_Contig1120:47355..473791680789452.2991073-UTR-P-littoralis_Contig1120:47355..47379Pylaiella littoralis U1_48UTRP-littoralis_Contig1120 47356..47379 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789452.3111632-CDS-P-littoralis_Contig1120:47379..476991680789452.3111632-CDS-P-littoralis_Contig1120:47379..47699Pylaiella littoralis U1_48CDSP-littoralis_Contig1120 47380..47699 +
1680789452.3240283-CDS-P-littoralis_Contig1120:47986..481101680789452.3240283-CDS-P-littoralis_Contig1120:47986..48110Pylaiella littoralis U1_48CDSP-littoralis_Contig1120 47987..48110 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1120.14.1prot_P-littoralis_Contig1120.14.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1120 47380..48110 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1120.14.1

>prot_P-littoralis_Contig1120.14.1 ID=prot_P-littoralis_Contig1120.14.1|Name=mRNA_P-littoralis_Contig1120.14.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=148bp
MGEAGGATATSQPGLAGGVSSTPSTSIDPMTNGPLLGAIDSLIVDNLKAM
VPLINNTLPQVDNIMDKKLAAMEDSLFKRLREDVLEQTRDGSRKPARSPS
SSPMWTRSDKRPNRERQSSPLDLRSRKRKDEHNSPNTPADARRNRSKD
back to top

mRNA from alignment at P-littoralis_Contig1120:47356..48110+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1120.14.1 ID=mRNA_P-littoralis_Contig1120.14.1|Name=mRNA_P-littoralis_Contig1120.14.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=755bp|location=Sequence derived from alignment at P-littoralis_Contig1120:47356..48110+ (Pylaiella littoralis U1_48)
AAGATACCTTCTGTGACTTCTGCTATGGGAGAGGCCGGCGGGGCTACAGC
CACATCGCAGCCCGGCCTTGCCGGTGGTGTGTCCTCCACACCATCAACGT
CCATAGATCCCATGACGAACGGCCCCCTTCTTGGTGCCATCGACAGCCTG
ATCGTCGACAACCTCAAGGCAATGGTGCCCCTCATCAACAATACCCTGCC
GCAAGTCGACAACATTATGGACAAGAAGCTAGCGGCGATGGAAGACTCGT
TGTTCAAGCGTCTTCGCGAGGATGTCCTCGAGCAGACTCGGGACGGCAGT
CGCAAGCCGGCGCGCTCGCCATCCTCATCGCCCATGTGGACGAGGTGACG
GCTCTTACCTTTTTGTTTTGGGTAAGGTTTTATCTGCGAATTTCATTTAC
GATGGCGTTGTAAATGTACTTCGTACGTAATCGCTGTCGACAAGGTTACT
GTTCGTGGTGTATTGCATATGCCTGCAAAGATAATAAATGAGTTATGCAG
GAGGGGTATTACGGTGCAGTTTTTTCGTGTTACAATTGACGCGTGCACCC
AGCCTATGTTTCAGACTTCGAACTATATTTTATTGCTTGTTGATATCGCG
TTCGGGCGTTCACCTGTGCGTCATAACTAAGGTCCGACAAACGTCCGAAC
CGCGAACGCCAGTCGTCCCCGCTCGACCTGAGGAGCCGCAAACGGAAGGA
CGAACACAACTCTCCGAACACGCCGGCCGACGCGAGGAGGAATCGCAGTA
AAGAT
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1120:47356..48110+

>mRNA_P-littoralis_Contig1120.14.1 ID=mRNA_P-littoralis_Contig1120.14.1|Name=mRNA_P-littoralis_Contig1120.14.1|organism=Pylaiella littoralis U1_48|type=CDS|length=444bp|location=Sequence derived from alignment at P-littoralis_Contig1120:47356..48110+ (Pylaiella littoralis U1_48)
ATGGGAGAGGCCGGCGGGGCTACAGCCACATCGCAGCCCGGCCTTGCCGG
TGGTGTGTCCTCCACACCATCAACGTCCATAGATCCCATGACGAACGGCC
CCCTTCTTGGTGCCATCGACAGCCTGATCGTCGACAACCTCAAGGCAATG
GTGCCCCTCATCAACAATACCCTGCCGCAAGTCGACAACATTATGGACAA
GAAGCTAGCGGCGATGGAAGACTCGTTGTTCAAGCGTCTTCGCGAGGATG
TCCTCGAGCAGACTCGGGACGGCAGTCGCAAGCCGGCGCGCTCGCCATCC
TCATCGCCCATGTGGACGAGGTCCGACAAACGTCCGAACCGCGAACGCCA
GTCGTCCCCGCTCGACCTGAGGAGCCGCAAACGGAAGGACGAACACAACT
CTCCGAACACGCCGGCCGACGCGAGGAGGAATCGCAGTAAAGAT
back to top