mRNA_P-littoralis_Contig1120.12.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1120.12.1
Unique NamemRNA_P-littoralis_Contig1120.12.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1120.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1120contigP-littoralis_Contig1120:44719..45765 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size471
Hectar predicted targeting categoryother localisation
Exons2
Cds size333
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789452.2514846-UTR-P-littoralis_Contig1120:44718..448541680789452.2514846-UTR-P-littoralis_Contig1120:44718..44854Pylaiella littoralis U1_48UTRP-littoralis_Contig1120 44719..44854 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789452.2636912-CDS-P-littoralis_Contig1120:44854..449301680789452.2636912-CDS-P-littoralis_Contig1120:44854..44930Pylaiella littoralis U1_48CDSP-littoralis_Contig1120 44855..44930 +
1680789452.2729468-CDS-P-littoralis_Contig1120:45508..457651680789452.2729468-CDS-P-littoralis_Contig1120:45508..45765Pylaiella littoralis U1_48CDSP-littoralis_Contig1120 45509..45765 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1120.12.1prot_P-littoralis_Contig1120.12.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1120 44855..45765 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1120.12.1

>prot_P-littoralis_Contig1120.12.1 ID=prot_P-littoralis_Contig1120.12.1|Name=mRNA_P-littoralis_Contig1120.12.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=111bp
MEERGGSALGESSSSRMANGTTGLSSGNTGLISPAGAGATTAVHPGAGGG
STGATPYTEAGGDTASMERPTASGTSLLSAQTSTPVNPYTARVGAPAAGG
SPSRNGAMSGA
back to top

mRNA from alignment at P-littoralis_Contig1120:44719..45765+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1120.12.1 ID=mRNA_P-littoralis_Contig1120.12.1|Name=mRNA_P-littoralis_Contig1120.12.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1047bp|location=Sequence derived from alignment at P-littoralis_Contig1120:44719..45765+ (Pylaiella littoralis U1_48)
GATACAGCAGTCGGAATATGAAATCTTGCGAGTTTAAAATCCTTGCTTTG
GAAGATCTGTACAAATTTGAAATGTAACGGTAAAAGACACACAATCCTCT
TCGTGATTACGGCCAACAACAGGCCAGCGCAGGGCTATGGAGGAGAGGGG
TGGATCTGCTCTTGGCGAGTCATCGTCATCCAGGATGGCCAATGGAACGA
CAGGGCTTAGCAGTGAGTGTTTTGCGGTCATGTTCGAGATTACTGCTGTT
GTCATGTTGCACTTATATACCCACCGCTCTCTTTTCGTGTACAGCAGTAT
CACACATCGTGGAGGACATGAGCCCCACCACCTCAAAGCAAACCACAGCA
ACAACCATCCATATCGTCGGTTACACAGGGCGAAGTCCGAGGCCGGTCGA
CAAGAAGAATGTCTATCATATGCTCCCTGTAATTACCCGAAGTTGTAGTT
TTATCGTGAACTTCGGGACCCAACAGGTGCAGGACGTGACTGCGGCATAG
GTCGTATACGATGCGAAAGTGCTCCGAACGACGTGTTGATAAGTCGAAGC
GTAACTCGAGGTGGCTGGAGGTGGAGGGTTAGCATATTTTGGGGTACAGA
TATGACAACAGTTACATCGGTAGTACACGCAGGGATGTCCCGAATTGCTC
GGTACGTGTGGAGCACTGCCTCGTCCTCCACTAACTGCCAAATTCCTCCC
TACACAGACTCGTTAAGTTGGGTGACTTAGTTTCCTTCTCATGATGAATT
GTCTCCGATTTTCCACTCCCGAATGCTGGCGTCGTCGAAGGTGGAAATAC
GGGTCTCATTTCCCCTGCTGGGGCTGGGGCCACTACTGCTGTACACCCTG
GTGCTGGTGGCGGCAGCACCGGGGCTACACCGTATACCGAAGCCGGTGGC
GACACCGCGAGCATGGAGAGGCCTACAGCGAGTGGTACTTCTTTGTTGTC
AGCCCAGACCTCTACGCCTGTTAATCCATACACAGCACGTGTCGGCGCTC
CTGCAGCCGGCGGTAGTCCATCTAGGAATGGCGCCATGTCCGGGGCC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1120:44719..45765+

>mRNA_P-littoralis_Contig1120.12.1 ID=mRNA_P-littoralis_Contig1120.12.1|Name=mRNA_P-littoralis_Contig1120.12.1|organism=Pylaiella littoralis U1_48|type=CDS|length=333bp|location=Sequence derived from alignment at P-littoralis_Contig1120:44719..45765+ (Pylaiella littoralis U1_48)
ATGGAGGAGAGGGGTGGATCTGCTCTTGGCGAGTCATCGTCATCCAGGAT
GGCCAATGGAACGACAGGGCTTAGCAGTGGAAATACGGGTCTCATTTCCC
CTGCTGGGGCTGGGGCCACTACTGCTGTACACCCTGGTGCTGGTGGCGGC
AGCACCGGGGCTACACCGTATACCGAAGCCGGTGGCGACACCGCGAGCAT
GGAGAGGCCTACAGCGAGTGGTACTTCTTTGTTGTCAGCCCAGACCTCTA
CGCCTGTTAATCCATACACAGCACGTGTCGGCGCTCCTGCAGCCGGCGGT
AGTCCATCTAGGAATGGCGCCATGTCCGGGGCC
back to top