mRNA_P-littoralis_Contig1120.5.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1120.5.1
Unique NamemRNA_P-littoralis_Contig1120.5.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1120.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1120contigP-littoralis_Contig1120:13393..17027 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size400
Hectar predicted targeting categoryother localisation
Exons2
Cds size345
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789452.1960237-UTR-P-littoralis_Contig1120:13392..134451680789452.1960237-UTR-P-littoralis_Contig1120:13392..13445Pylaiella littoralis U1_48UTRP-littoralis_Contig1120 13393..13445 +
1680789452.2249177-UTR-P-littoralis_Contig1120:17025..170271680789452.2249177-UTR-P-littoralis_Contig1120:17025..17027Pylaiella littoralis U1_48UTRP-littoralis_Contig1120 17026..17027 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789452.2058299-CDS-P-littoralis_Contig1120:13445..134761680789452.2058299-CDS-P-littoralis_Contig1120:13445..13476Pylaiella littoralis U1_48CDSP-littoralis_Contig1120 13446..13476 +
1680789452.2172658-CDS-P-littoralis_Contig1120:16711..170251680789452.2172658-CDS-P-littoralis_Contig1120:16711..17025Pylaiella littoralis U1_48CDSP-littoralis_Contig1120 16712..17025 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1120.5.1prot_P-littoralis_Contig1120.5.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1120 13446..17025 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1120.5.1

>prot_P-littoralis_Contig1120.5.1 ID=prot_P-littoralis_Contig1120.5.1|Name=mRNA_P-littoralis_Contig1120.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=115bp
MGHRTALLQLDDRKRKSQRAESAAAPIVKVNSGTATATGKPETPPSSLAA
APTTSAAPSRRKRKRRERTQQRHQSLRQTAAQRRPLTWKIRLQGLPLPRH
QRLRPRAGGLGAAG*
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mRNA from alignment at P-littoralis_Contig1120:13393..17027+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1120.5.1 ID=mRNA_P-littoralis_Contig1120.5.1|Name=mRNA_P-littoralis_Contig1120.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3635bp|location=Sequence derived from alignment at P-littoralis_Contig1120:13393..17027+ (Pylaiella littoralis U1_48)
ACCCGGCCACCGCCAACGTCGGATGGCCACCGAAGAAAACGAAGAAATGG
TCCATGGGGCACAGGACCGCCTTGTTGCAACTCGGTGAGGCATGAGGCTT
ACATCTACGGCTGTGTGCGTGTCTGTGCGTTGTCCCCGCTGTGTTCCGTA
TGCTGGTCATGCTTGCGGGTGTTGGATGTGCACACCTTCAGCGTAGCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCACTCTCTCTGTGCAGTCG
TGAAAACTGAGCGCAGCACACTCTACTGCTGTGCGGTTCAATTGTTTTGC
ATGTTTTTTTTTATGATAACCACTTTTTCGAGATCTCTCTCTCTCATGTC
TCTCTCTCTCTCTTCTCTCACACACACACGTCCTCACCTGGCAGCTACAG
CAGCACTGCTGCAGACCTCCAAGATATGTGTATATGCTTGTGCTCTGTGT
CTATATGTTGAGTGTGTTATGCTCCTATAAGGCTTCCAAACCCGGACCTC
GACAGCGCTGGTAACTTGTTATACAGCGACAAGCTCCACACAGTGTAGCG
TGACTAGTAGTGGATGATAGGTATAGGATATGTTGCCGCCAAAAGGATCC
GACCGGAGTAGACTATAGATATTCTGCTCGACTTTGATTTAAGTACTTAC
TGCTGTAGTACGAGAGTAGGCCGAGGTTCGGGGCCAGGCACCAACGGTTT
CCACACAGGTAGTGTTCGTAAGAATGTTGGTGGGGTCAACATGTTGCGCG
TTGTTTAACAGAATTGGGATATTTGGTTGTCCGCATCGGTGTCTACAGCA
GCAGCACTCGACCTGACCGCTGCTGTGTCTTGCAATATATTTTTGTCACC
CCGTTCCTGATTTTGCTGTAGGTCCGTCCCGCACTGTTTTTGCGTGCGAT
CCTCTCCTTCAATCGTAGCCGTGCCATGATAACACAGCCGCGTGACTGAA
ACAAAAGCGCCGCCTTGCGTCGTGCAGAGAGGGGGCACGCTACTACGTTG
CCCATCCCCACATCGTGGAAAATCCAATAATCGTAGACGTGGTTAAGAAA
CGCGGCGAGTCTCTTGGGAAACGCGGCGAAACTCTACGCCAATCTCAGCG
TCCCTGCTGAACACGTCATTTTAGTCTCGCCGCCTCAAAAAATCTGAGCA
AAATCTCTTTTTTTTGTATCAAGCAAAAATCCGGGCAAAAAATCCGAGCA
AAATTCCGAGCAAACTTCCGAGCCATTTCGGGGGGCCGAAATGGAAACCA
CCGAAACTGTCTAATAAAAAAATGTGTGAAGTTATCTCTCTCTGTGTGTG
GACAAAACAAACGATATTAATCACAATAGAGCATCAGAGGAGGAGAGCTC
TGCTACTACTTTCTGTGTTGTTGCAGCTGCTGCTCCTGCTGCTGCTGCTA
CTACTGCTTGCTGCTGTCCATACATGTGTCCACCATCTTTCTGCGTGCGC
TTGCCGTGTCATCATTCATACCATCGTGTTCATCAGCAACCAAAACCAAC
CATATGTAGCAGCAGCATCATCAGGACAGCAGCAGCAGCAGGAGGAGTAT
CAAAGCTTCCTCCGAGAGAGACCACAGTTTGCATCTTCGCTCGTAACTCC
CCAATGAATGAAGCCACAGCGATGACAAACCCATCTCCCGTGAGCTGTGC
GTATGGCTCCCCTCGTGTGGTAATCGTTTGGGTGAGGATTATACTGGCAT
GTTCGCAAAATGGTCATCGCTCGTGGCTGTGGCATGTTAACTGTTGTGTT
GTAAAAAAGAACCCGAGCTGTCATCCCCTTTCTCTACTGCTGTACAACTA
CCATACATACAGCAGTATATAATAATGCTGCCGTACACCAGTCCGGCTGA
TACATCTTTCTCAATTTGTTTCGCATGAGTTGGCCATGAGCAAACCTACG
TTGCGAAAGTACGGATGTAACCCTAACCCAAGCGATCACGACACGAGGGG
GATCATATACACAGCTCACGGAAGATGCCTTCGTCATTGCTATGTCTTCA
TTCGTTCGAAAGTTACGGGCGGCGATGCAAACGGGTTTCAGCGCAAAAAA
CACCATCCTGCGGTCCTTCGATTTCTTCAACCACATACTTAAAAAGAGGG
ATCACCGAAAATCCGAACACCTACTTACCTAGACTATGAGAACAGCGGAT
CGGCAACCGTTGGCCGGAAAAAGTTCGTTCGGATTCTATCAAAAAATGAA
AAAAATGGTCATCGCTCGTGGCTGTGGCATCTTGTTGTGTTGTAAAAAAG
AACCCGAGCTGTCATCTCCTTTCTCTACTGCTGTACACCTACTATACATA
CAGCAGTATATAATAATGCTGCTGTACAGCAGTCCGGCTGATACATCTTT
CTCAATTTGTTTCGCATGAGTTGGCCATGAGCAAACCTTCGTTGTCGTTG
CGAAAGTATGGATGTAACCCTAACCCAAGCGATCACGACACGAGGGGGAT
CATAAACACAGCTCACGGAAGATGCCTTCTTCGTCATTGCTGTGTCTTCA
TTCGTTCGAAAGTTACGAGCGGCGATGCACACGGGTTTCAGCGCAAAAAA
CACCACCCTGCGGTCATTCGATTTCTTCAACCACATACTTAAAAAAAGGG
ATCACCGAAAATCCGAACACCTGCCCCACCTATAAGAACAACAGCGGATC
GGCAACCGTTGGCCGGAAAAAGTTTGTTCGGATTCTATCAGAAAATGAAA
AAAAAATCCGGCCCTACAAGAAACCGCCTTAGGATCAGGAAAAAACAAAT
CACACTTTTTTTTTCATTTTGTAGTGTGTGTGTTGTCATCCCTTTCATTG
GACGCCACTCTACACCTTTCGGGTAGGTAGACGCTCCAACCGGGGTCACA
CAGGGGGAAGTCAACACAGGAGTTTTTGTGTTTTTTTCTCCACTTCCCTC
TGCGGTGCTTGCCTTTTTGGTTGAGCTTCTATCGCGAGAAAGGGGACAGC
AATCCCTTTCCCTCGTCGATGGTACGATCGAATTCTGTTTACTCACGAAT
TGATCGCTTTCCACTTTCACGCGCAATGTGAGAAAAAGCCCCAGATCGTG
TTACTGCACTGGGATTCGAACTCACGCGTGGATGTCAGAAGGTTGCGTGG
ATAAACACCTGAACAACCGGGGCGACCGGTCTTTTGCAGTAGAACGTAGA
TAAAATCCCGTCATTATAACACCGACGTTCTGGTACTGTTTTTTGAAAGT
TCAAACATCACATGAACATAAACTATACCCATCTTGTATTGTACACTGTT
TCTTTACTTCATAGACACAATCACCCTGATGTTCTTGTACTTTTGTTTTT
TCAACGTCGGCTGCGACAGATGATAGGAAGAGAAAGAGTCAGAGAGCGGA
GTCAGCAGCGGCGCCAATCGTCAAGGTCAACAGCGGTACAGCAACCGCCA
CTGGCAAGCCAGAAACGCCGCCGTCATCGCTGGCTGCCGCGCCAACAACG
TCGGCTGCGCCCAGTCGTAGGAAGAGGAAGAGAAGGGAGCGGACCCAGCA
GCGGCACCAATCATTGAGGCAGACAGCGGCACAGCGACGGCCACTGACCT
GGAAAATACGTCTGCAGGGTTTGCCCCTTCCGCGGCACCAGCGGCTGCGT
CCGAGAGCGGGAGGTCTAGGAGCGGCAGGGTGATA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1120:13393..17027+

>mRNA_P-littoralis_Contig1120.5.1 ID=mRNA_P-littoralis_Contig1120.5.1|Name=mRNA_P-littoralis_Contig1120.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=345bp|location=Sequence derived from alignment at P-littoralis_Contig1120:13393..17027+ (Pylaiella littoralis U1_48)
ATGGGGCACAGGACCGCCTTGTTGCAACTCGATGATAGGAAGAGAAAGAG
TCAGAGAGCGGAGTCAGCAGCGGCGCCAATCGTCAAGGTCAACAGCGGTA
CAGCAACCGCCACTGGCAAGCCAGAAACGCCGCCGTCATCGCTGGCTGCC
GCGCCAACAACGTCGGCTGCGCCCAGTCGTAGGAAGAGGAAGAGAAGGGA
GCGGACCCAGCAGCGGCACCAATCATTGAGGCAGACAGCGGCACAGCGAC
GGCCACTGACCTGGAAAATACGTCTGCAGGGTTTGCCCCTTCCGCGGCAC
CAGCGGCTGCGTCCGAGAGCGGGAGGTCTAGGAGCGGCAGGGTGA
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