mRNA_P-littoralis_Contig112.133.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig112.133.1
Unique NamemRNA_P-littoralis_Contig112.133.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig112.133.1 vs. uniprot
Match: A0A6H5JS69_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS69_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 5.150e-36
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 1 
Query:    1 VEDGVALGACSEMIEYARSFKHVLGSQDTDVILPGYEGLLRRPMLVDATAQALLNEADSADGGTRG 198
            VEDGVALGACSEMIEYARSFKHVLGSQDTDVILPGYEGLLRRPMLVDATAQALLNEADSADGGTRG
Sbjct:   35 VEDGVALGACSEMIEYARSFKHVLGSQDTDVILPGYEGLLRRPMLVDATAQALLNEADSADGGTRG 100
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BLAST of mRNA_P-littoralis_Contig112.133.1 vs. uniprot
Match: A0A6H5KB14_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB14_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 2.970e-25
Identity = 50/66 (75.76%), Postives = 57/66 (86.36%), Query Frame = 1 
Query:    1 VEDGVALGACSEMIEYARSFKHVLGSQDTDVILPGYEGLLRRPMLVDATAQALLNEADSADGGTRG 198
            +EDG+ALGACS+++E+A SFK  LGS DT VILPGYEGLLRRPM VD TAQALLN ADSADGG +G
Sbjct:   51 MEDGLALGACSDVVEHALSFKLDLGSGDTVVILPGYEGLLRRPMCVDVTAQALLNGADSADGGGKG 116
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BLAST of mRNA_P-littoralis_Contig112.133.1 vs. uniprot
Match: D8LFN7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFN7_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 5.160e-19
Identity = 44/64 (68.75%), Postives = 50/64 (78.12%), Query Frame = 1 
Query:    7 DGVALGACSEMIEYARSFKHVLGSQDTDVILPGYEGLLRRPMLVDATAQALLNEADSADGGTRG 198
            D VALGA   MIE+A+SFK VL S+DTDVIL GYEGL+RRP+ V  TA+A LN  DSADGG RG
Sbjct:   35 DDVALGAHLGMIEHAKSFKDVLCSKDTDVILSGYEGLVRRPIRVGRTAEAFLNGVDSADGGGRG 98
[Close]
BLAST of mRNA_P-littoralis_Contig112.133.1 vs. uniprot
Match: A0A6H5JIG7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIG7_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 1.640e-18
Identity = 44/64 (68.75%), Postives = 51/64 (79.69%), Query Frame = 1 
Query:    7 DGVALGACSEMIEYARSFKHVLGSQDTDVILPGYEGLLRRPMLVDATAQALLNEADSADGGTRG 198
            DGV L AC  +I++A+SFK VL S+DTDVILPGYEGLLRRPM VD TA+ LLN  + ADGG RG
Sbjct:   31 DGVELEACLGIIQHAKSFKDVLCSEDTDVILPGYEGLLRRPMRVDRTAEDLLNGGEGADGGGRG 94
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig112.133.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JS69_9PHAE5.150e-36100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KB14_9PHAE2.970e-2575.76Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D8LFN7_ECTSI5.160e-1968.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JIG7_9PHAE1.640e-1868.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig112contigP-littoralis_Contig112:509633..510298 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size198
Hectar predicted targeting categoryother localisation
Exons2
Cds size198
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789452.1492705-CDS-P-littoralis_Contig112:509632..5097281680789452.1492705-CDS-P-littoralis_Contig112:509632..509728Pylaiella littoralis U1_48CDSP-littoralis_Contig112 509633..509728 -
1680789452.1586964-CDS-P-littoralis_Contig112:510196..5102981680789452.1586964-CDS-P-littoralis_Contig112:510196..510298Pylaiella littoralis U1_48CDSP-littoralis_Contig112 510197..510298 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig112.133.1prot_P-littoralis_Contig112.133.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig112 509633..510298 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig112.133.1

>prot_P-littoralis_Contig112.133.1 ID=prot_P-littoralis_Contig112.133.1|Name=mRNA_P-littoralis_Contig112.133.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=66bp
VEDGVALGACSEMIEYARSFKHVLGSQDTDVILPGYEGLLRRPMLVDATA
QALLNEADSADGGTRG
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mRNA from alignment at P-littoralis_Contig112:509633..510298-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig112.133.1 ID=mRNA_P-littoralis_Contig112.133.1|Name=mRNA_P-littoralis_Contig112.133.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=666bp|location=Sequence derived from alignment at P-littoralis_Contig112:509633..510298- (Pylaiella littoralis U1_48)
GTGGAAGACGGTGTGGCACTTGGTGCATGCTCGGAGATGATCGAGTACGC
TAGGAGCTTCAAGCACGTGTTGGGCAGCCAAGATACGGACGTCATCCTAC
CGGTAAGAGCACCAGACGCACGCACGGCATTATCCAGCTTGGGGCGTGGT
TTTGGCACGGCCGACCTCGGCATAATACCGTAATCTTCGGGGTCGTACAC
CCCCCGTGGTGTTCATGGAAAAAATAAAGTCCCCATCCCATTTGTTCTAT
TTTCCCCCCGAGTAAGCGCAAGGAAAAACTCTAGAGGCAAAGTTCATCCC
CTCCCAGGGTTGGCGGCAACGACGACCACGGTGTTTCATGTCTTGGTGTA
GCGCGCAATGTTTCGAGCACGACGTGCCACAGTCATCGCTGCGAAACATT
AGGTGGGTGTACTTCCGCGAAGGAACTGGTCGCGTTTCGTGCTTCATCAA
AACCCAGTGTATTGGGTGAGCAATTTTTGTGCACCCATGCATCGTGCACG
TGCTATAGGCACACCATGGGATCAAAATGATGCCACCAGAAACACAATCG
CCTCCGGTCGTTTTTTGCAGGGATACGAAGGATTGTTGAGGCGACCCATG
CTCGTGGATGCAACGGCTCAAGCCCTGCTCAACGAGGCGGACAGCGCGGA
CGGTGGGACCAGGGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig112:509633..510298-

>mRNA_P-littoralis_Contig112.133.1 ID=mRNA_P-littoralis_Contig112.133.1|Name=mRNA_P-littoralis_Contig112.133.1|organism=Pylaiella littoralis U1_48|type=CDS|length=198bp|location=Sequence derived from alignment at P-littoralis_Contig112:509633..510298- (Pylaiella littoralis U1_48)
GTGGAAGACGGTGTGGCACTTGGTGCATGCTCGGAGATGATCGAGTACGC
TAGGAGCTTCAAGCACGTGTTGGGCAGCCAAGATACGGACGTCATCCTAC
CGGGATACGAAGGATTGTTGAGGCGACCCATGCTCGTGGATGCAACGGCT
CAAGCCCTGCTCAACGAGGCGGACAGCGCGGACGGTGGGACCAGGGGG
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