mRNA_P-littoralis_Contig112.121.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig112.121.2
Unique NamemRNA_P-littoralis_Contig112.121.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig112.121.2 vs. uniprot
Match: D7G0Y0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Y0_ECTSI)

HSP 1 Score: 167 bits (422), Expect = 1.190e-50
Identity = 82/92 (89.13%), Postives = 85/92 (92.39%), Query Frame = 1
Query:   10 APEPPTHLKRRWLDRYCTSPEAVDALLGAVGITGCVLDMCGGPTDAVATRLRLTSEVLTNDVSSGRPADTNLDASLESCPEDFLAANSGKRP 285
            APEP THL+RRWLDRYCTSPEA+DA LGAV ITGCVLDMCGGPTDAVATRLR T E+LTNDVSSGRPADTNLDASLES PEDFLAA SGKRP
Sbjct:   15 APEPQTHLRRRWLDRYCTSPEAMDASLGAVDITGCVLDMCGGPTDAVATRLRSTCEILTNDVSSGRPADTNLDASLESFPEDFLAAYSGKRP 106          
BLAST of mRNA_P-littoralis_Contig112.121.2 vs. uniprot
Match: A0A6H5KD58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD58_9PHAE)

HSP 1 Score: 162 bits (411), Expect = 1.240e-48
Identity = 79/91 (86.81%), Postives = 84/91 (92.31%), Query Frame = 1
Query:   13 PEPPTHLKRRWLDRYCTSPEAVDALLGAVGITGCVLDMCGGPTDAVATRLRLTSEVLTNDVSSGRPADTNLDASLESCPEDFLAANSGKRP 285
            PEP THLKRRWLDRYCTSPEAV+ALLGAV ITGC+LD+CGGPTDAVATRL  T EVLTNDVSSGRPADTNLDASLES P+DF AA+SGKRP
Sbjct:   82 PEPQTHLKRRWLDRYCTSPEAVEALLGAVSITGCILDVCGGPTDAVATRLGPTCEVLTNDVSSGRPADTNLDASLESFPDDFFAASSGKRP 172          
BLAST of mRNA_P-littoralis_Contig112.121.2 vs. uniprot
Match: A0A6H5K8H6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8H6_9PHAE)

HSP 1 Score: 162 bits (410), Expect = 3.380e-48
Identity = 79/91 (86.81%), Postives = 83/91 (91.21%), Query Frame = 1
Query:   13 PEPPTHLKRRWLDRYCTSPEAVDALLGAVGITGCVLDMCGGPTDAVATRLRLTSEVLTNDVSSGRPADTNLDASLESCPEDFLAANSGKRP 285
            PEP THLKRRWLDRYCTSPEAV+ALLGAV ITGC+LDMCGGPTDAVATRLR T EV T DVSSGRPADTNLDASLES P+DF+AA SGKRP
Sbjct:  153 PEPQTHLKRRWLDRYCTSPEAVEALLGAVSITGCILDMCGGPTDAVATRLRPTCEVFTKDVSSGRPADTNLDASLESLPDDFVAACSGKRP 243          
BLAST of mRNA_P-littoralis_Contig112.121.2 vs. uniprot
Match: A0A6H5KNW7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNW7_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 1.080e-38
Identity = 64/68 (94.12%), Postives = 64/68 (94.12%), Query Frame = 1
Query:    1 WVGAPEPPTHLKRRWLDRYCTSPEAVDALLGAVGITGCVLDMCGGPTDAVATRLRLTSEVLTNDVSSG 204
            WVGAPEP THLKRRWLDRYCTSPEAVDALLGAVGITGCVLDMCGGPTDAVATRLR T EVLTND SSG
Sbjct:  105 WVGAPEPQTHLKRRWLDRYCTSPEAVDALLGAVGITGCVLDMCGGPTDAVATRLRSTCEVLTNDASSG 172          
BLAST of mRNA_P-littoralis_Contig112.121.2 vs. uniprot
Match: D7FJU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJU4_ECTSI)

HSP 1 Score: 130 bits (328), Expect = 3.630e-36
Identity = 66/100 (66.00%), Postives = 75/100 (75.00%), Query Frame = 1
Query:    1 WVGAPEPPTHLKRRWLDRYCTSPEAVDALLGAVGITGCVLDMCGGPTDAVATRLRLTSEVLTNDVSS-----GRPADTNLDASLESCPEDFLAANSGKRP 285
            W G PEP  H+KRR LDRYCTSPEAV+ALLGAV + GCVLDMCGGP DA+ATRL  T +V+TND+S+     G P DTNLDASL S   DFL A  G+RP
Sbjct:   65 WTGIPEPRKHIKRRCLDRYCTSPEAVEALLGAVELEGCVLDMCGGPGDAIATRLGATCKVVTNDISTRLSPGGLPPDTNLDASLASFAVDFLLAKPGQRP 164          
BLAST of mRNA_P-littoralis_Contig112.121.2 vs. uniprot
Match: D8LPP0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPP0_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 5.410e-34
Identity = 57/67 (85.07%), Postives = 59/67 (88.06%), Query Frame = 1
Query:    1 WVGAPEPPTHLKRRWLDRYCTSPEAVDALLGAVGITGCVLDMCGGPTDAVATRLRLTSEVLTNDVSS 201
            W  AP P THL+RRWLDRYCTSPEAVDALLGAV ITGCVLDMCGGPTDAVATRLR   E+LTNDVSS
Sbjct:    2 WRTAPAPQTHLRRRWLDRYCTSPEAVDALLGAVDITGCVLDMCGGPTDAVATRLRSACEILTNDVSS 68          
BLAST of mRNA_P-littoralis_Contig112.121.2 vs. uniprot
Match: A0A6H5JAW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAW8_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 1.700e-32
Identity = 57/68 (83.82%), Postives = 58/68 (85.29%), Query Frame = 1
Query:    1 WVGAPEPPTHLKRRWLDRYCTSPEAVDALLGAVGITGCVLDMCGGPTDAVATRLRLTSEVLTNDVSSG 204
            W  APEP  HLKRR LDRYCTSPEAVDALLG+V ITGCV DMCGGPTDAVA RLR T EVLTNDVSSG
Sbjct:   22 WKSAPEPEIHLKRRLLDRYCTSPEAVDALLGSVDITGCVSDMCGGPTDAVAARLRSTCEVLTNDVSSG 89          
BLAST of mRNA_P-littoralis_Contig112.121.2 vs. uniprot
Match: A0A6H5KZK3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZK3_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 2.280e-32
Identity = 64/95 (67.37%), Postives = 67/95 (70.53%), Query Frame = 1
Query:    1 WVGAPEPPTHLKRRWLDRYCTSPEAVDALLGAVGITGCVLDMCGGPTDAVATRLRLTSEVLTNDVSSGRPADTNLDASLESCPEDFLAANSGKRP 285
            W  APEP TH KRR LDRYCTSP AVDAL  AV I GCVLDMCGGP  AVA     T EVLTNDV S    D+NLDASL S P DFL A+ GK+P
Sbjct:   45 WSAAPEPVTHDKRRRLDRYCTSPGAVDALRDAVDIMGCVLDMCGGPEAAVALGFGGTCEVLTNDVGSRLSPDSNLDASLLSFPSDFLKAHPGKQP 139          
BLAST of mRNA_P-littoralis_Contig112.121.2 vs. uniprot
Match: A0A6H5JUK3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK3_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 1.390e-31
Identity = 64/95 (67.37%), Postives = 68/95 (71.58%), Query Frame = 1
Query:    1 WVGAPEPPTHLKRRWLDRYCTSPEAVDALLGAVGITGCVLDMCGGPTDAVATRLRLTSEVLTNDVSSGRPADTNLDASLESCPEDFLAANSGKRP 285
            W  APEP TH KRR LDRYCT PEAV+ L  AV I GCVLDMCGGP DAVA   R T EVLTNDVSS   A TNLDASL S  ++F  AN GK+P
Sbjct:  111 WSAAPEPVTHDKRRRLDRYCTLPEAVEVLQNAVAIAGCVLDMCGGPEDAVAQGFRSTCEVLTNDVSSRLSAGTNLDASLLSFRDNFRKANPGKQP 205          
BLAST of mRNA_P-littoralis_Contig112.121.2 vs. uniprot
Match: A0A6H5K049_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K049_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 6.460e-30
Identity = 59/95 (62.11%), Postives = 68/95 (71.58%), Query Frame = 1
Query:    1 WVGAPEPPTHLKRRWLDRYCTSPEAVDALLGAVGITGCVLDMCGGPTDAVATRLRLTSEVLTNDVSSGRPADTNLDASLESCPEDFLAANSGKRP 285
            W  APEP   LKRR +DRYCTSP  ++ALLG V I+GCVLDMCGG  DAVA RLR T +VLTNDV       TNLDAS  S  +DFLAA+ G++P
Sbjct:   53 WTCAPEPVKQLKRRCVDRYCTSPATLEALLGVVSISGCVLDMCGGTDDAVAIRLRDTCQVLTNDVGPRLSPATNLDASSASFTDDFLAAHHGQQP 147          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig112.121.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0Y0_ECTSI1.190e-5089.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KD58_9PHAE1.240e-4886.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8H6_9PHAE3.380e-4886.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNW7_9PHAE1.080e-3894.12Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D7FJU4_ECTSI3.630e-3666.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LPP0_ECTSI5.410e-3485.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JAW8_9PHAE1.700e-3283.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZK3_9PHAE2.280e-3267.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUK3_9PHAE1.390e-3167.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K049_9PHAE6.460e-3062.11Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig112contigP-littoralis_Contig112:504023..504947 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size287
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-18_001920.1
Cds size285
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789451.9575343-CDS-P-littoralis_Contig112:504022..5042251680789451.9575343-CDS-P-littoralis_Contig112:504022..504225Pylaiella littoralis U1_48CDSP-littoralis_Contig112 504023..504225 +
1680789451.9738126-CDS-P-littoralis_Contig112:504863..5049451680789451.9738126-CDS-P-littoralis_Contig112:504863..504945Pylaiella littoralis U1_48CDSP-littoralis_Contig112 504864..504945 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig112.121.2prot_P-littoralis_Contig112.121.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig112 504023..504945 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig112.121.2

>prot_P-littoralis_Contig112.121.2 ID=prot_P-littoralis_Contig112.121.2|Name=mRNA_P-littoralis_Contig112.121.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=95bp
WVGAPEPPTHLKRRWLDRYCTSPEAVDALLGAVGITGCVLDMCGGPTDAV
ATRLRLTSEVLTNDVSSGRPADTNLDASLESCPEDFLAANSGKRP
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mRNA from alignment at P-littoralis_Contig112:504023..504947+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig112.121.2 ID=mRNA_P-littoralis_Contig112.121.2|Name=mRNA_P-littoralis_Contig112.121.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=925bp|location=Sequence derived from alignment at P-littoralis_Contig112:504023..504947+ (Pylaiella littoralis U1_48)
TGGGTTGGTGCTCCTGAACCTCCAACGCACCTGAAGCGTCGGTGGCTTGA TAGGTACTGCACTTCGCCTGAGGCGGTGGATGCTTTGCTGGGTGCTGTGG GTATCACGGGATGCGTTTTGGACATGTGCGGTGGGCCCACGGACGCCGTC GCGACCCGTCTTCGACTCACGTCCGAAGTTCTCACCAACGACGTGAGCTC GGGGTAAGGACATTCTACCTCTGTTCAGTAACTTGAAAATACCCCGCAGA AAACTTCCTTGCACATAGACGTTCAGAAAACACAGGGGGCAGCCGACAAA AACTCTTCTGACAACAGTTCAAATGTAAAAGTCATTCGACCGTATTGCGG ATGGTAGGTTGTGCTCAGGCCCGACATGGAACGTGAACATCACGATGTGG TACAGAACAACACAAAATGTCCCTGGTTTTTCATGAACACGATAATTTCG CCCCCGATCATTTCTGTGAGTTCGCTCCGAGTCGTTATTCTccCCCCCCC CCCCGATATAAATCACCGTTGCTCACGTTTCATGGCTTGATTTTCGGTTT TGGCTGTTGCCAGAGGTGCCAAGTGCTCGGATTTGCAATGGTAAAATCTG CAGTTGACAGACAGGTTCTGGGTGCATGCCTGCAAAGGCCGTGTGCCCTT TTGACAGGCACGGGCCACGCTCCTCATAGCACGTATGGGGGTCTTTCTTC TCGAGCAGTGGATGTCTTCGTTGAAGAGGGAGATTCTCACGCGTTTGGCG AAACGGCAACACCATGTTCGCGCATGATTATTTTTTTCCCGTATCATGTG CGCGATCGCTGATTTCTTGTATTCTGTTGTTGTCGATGCAGGCGCCCAGC GGATACCAACCTTGACGCAAGCTTGGAGTCCTGCCCGGAAGACTTTCTCG CAGCTAACTCCGGGAAAAGGCCTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig112:504023..504947+

>mRNA_P-littoralis_Contig112.121.2 ID=mRNA_P-littoralis_Contig112.121.2|Name=mRNA_P-littoralis_Contig112.121.2|organism=Pylaiella littoralis U1_48|type=CDS|length=285bp|location=Sequence derived from alignment at P-littoralis_Contig112:504023..504947+ (Pylaiella littoralis U1_48)
TGGGTTGGTGCTCCTGAACCTCCAACGCACCTGAAGCGTCGGTGGCTTGA
TAGGTACTGCACTTCGCCTGAGGCGGTGGATGCTTTGCTGGGTGCTGTGG
GTATCACGGGATGCGTTTTGGACATGTGCGGTGGGCCCACGGACGCCGTC
GCGACCCGTCTTCGACTCACGTCCGAAGTTCTCACCAACGACGTGAGCTC
GGGGCGCCCAGCGGATACCAACCTTGACGCAAGCTTGGAGTCCTGCCCGG
AAGACTTTCTCGCAGCTAACTCCGGGAAAAGGCCT
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