mRNA_P-littoralis_Contig1.291.8 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1.291.8
Unique NamemRNA_P-littoralis_Contig1.291.8
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1.291.8 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1contigP-littoralis_Contig1:1384487..1386070 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size404
Hectar predicted targeting categoryother localisation
Exons2
Cds size381
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789308.5872834-UTR-P-littoralis_Contig1:1384486..13845071680789308.5872834-UTR-P-littoralis_Contig1:1384486..1384507Pylaiella littoralis U1_48UTRP-littoralis_Contig1 1384487..1384507 -
1680789308.6229174-UTR-P-littoralis_Contig1:1386068..13860701680789308.6229174-UTR-P-littoralis_Contig1:1386068..1386070Pylaiella littoralis U1_48UTRP-littoralis_Contig1 1386069..1386070 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789308.603576-CDS-P-littoralis_Contig1:1384507..13848071680789308.603576-CDS-P-littoralis_Contig1:1384507..1384807Pylaiella littoralis U1_48CDSP-littoralis_Contig1 1384508..1384807 -
1680789308.613546-CDS-P-littoralis_Contig1:1385987..13860681680789308.613546-CDS-P-littoralis_Contig1:1385987..1386068Pylaiella littoralis U1_48CDSP-littoralis_Contig1 1385988..1386068 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1.291.8prot_P-littoralis_Contig1.291.8Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1 1384508..1386068 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1.291.8

>prot_P-littoralis_Contig1.291.8 ID=prot_P-littoralis_Contig1.291.8|Name=mRNA_P-littoralis_Contig1.291.8|organism=Pylaiella littoralis U1_48|type=polypeptide|length=127bp
MLLKHDRKGTEPPAWLLKLLMPVTDDQLRSSVETHSTKIASLVSAVKSLQ
EQRTQPPSRGRSRDGSKKREHTKHQGSGRTKILKKDFAPCTYPGCYRPHT
HPVEDCGHRRNDEKHGFVRTAVTKQG*
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mRNA from alignment at P-littoralis_Contig1:1384487..1386070-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1.291.8 ID=mRNA_P-littoralis_Contig1.291.8|Name=mRNA_P-littoralis_Contig1.291.8|organism=Pylaiella littoralis U1_48|type=mRNA|length=1584bp|location=Sequence derived from alignment at P-littoralis_Contig1:1384487..1386070- (Pylaiella littoralis U1_48)
CCATGCTACTAAAGCATGATCGGAAAGGGACGGAACCACCAGCCTGGCTC
TTGAAGCTACTCATGCCCGTGACAGACGACCAGGTGAACACAGTTGACCG
TATGCCTCGCGTCGAGTGCGGTAGCATTAGCCCACGTGTTGCCAGTAACA
GCGCTGACCCTGCAGCACCACAACAACCCCGCAATGTACCTCTGTTATCA
CACGTACCTTCCACGAACGACACTCTACCATCTTGCAATAACAGATCATC
TACCGTACAACCTAGAGATCTTGAGAGCGAGACCCCCCATTTTGTCACAA
CAACAACGACAGCAGATCATCTGCCGTACAATCCAGAGACCTTGGGGTAG
AATTTGTCCGAGTCAGGCCAGCCACCGTCGCTGCCACAGGAACGGACACT
CCGGTAGGTGCAAACGCTACACAAGGACTTAGCAACCCTGCTAGCGCACG
CACCATGCGGGAGTCGGCTGCTCCTGTCATGACTCCAACAACCCCGCAAT
TTTTCTCTCACACACAAGTCGGACCCCAACCGTCTGCTCACCAAGCAGGA
ACCAACAGCCGATTTGTTTTGAAACCAACAGATTTGCCGAAGGACCTCGT
TTTTTCCGGCGAACAAACTCAGGACGTCGTTGAGCTTCTTACTCTTTTTC
GCGCTCGGGTAAAACTCAACTCAGTTGACGGTTGCCCAGATGACGTAGTT
GACCAACGTGCCATCAAGTACTTGCCACTCCTCGTGCGAGGGGCTGCCAA
TGACAGTCTTTTGCAGTTGGCCGCAGGTACTCTTGAGTGGAGAACAGAGA
GTGTAATCTCGAATCTTCGGACTTCGGGACAAAGCACTCGACCAATCTCC
CCAACTACTTGGACAGAGTGGTGCCAAGCATTCAGCTTCCTTTTTCCGCG
CCAAATCGCATTTCTATTTTAGCGCGTGAAATTACGACGATCAAACAAAC
AGAATCACAATCAGTGGACATGTATGCCCTGAAAGTCACGCAAGCGTGCA
CCCGTCTGATCGCCGAAGCCACCCGCTCTGCCCCACCCACTACTAGCCCC
CACGAACACGCATGGGATGTTTTTCTCACAGCTACGTTCGAAAATGGTCT
CCTTCCCGGGATCAGGCTTGAGTGTATCCGAGAAAACCCTGTTCTCAGTT
TCCAGGAGGCTCGCGTTCGCGCGAAAAAACATGAATCAAACAACTTACGA
GGCACACCCCTTACACCCCAAAGCCCAACTACCTATGCTTCGGCCGTGTC
GCACAACCCACAGCTGCGCTCATCAGTGGAGACCCACTCCACCAAAATTG
CGAGTCTGGTCTCCGCGGTCAAGAGTCTCCAAGAACAACGAACCCAACCT
CCATCTCGGGGCCGCAGCCGCGACGGGAGTAAGAAGCGGGAGCACACCAA
ACACCAGGGGTCTGGCAGGACCAAAATCCTAAAGAAAGATTTTGCTCCAT
GCACATACCCCGGGTGCTACCGTCCGCACACTCACCCCGTTGAGGACTGC
GGTCACCGCAGGAACGACGAGAAGCACGGGTTCGTCCGCACCGCCGTCAC
GAAGCAGGGATGACGGGGCCCGAATTGGGTCCCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1:1384487..1386070-

>mRNA_P-littoralis_Contig1.291.8 ID=mRNA_P-littoralis_Contig1.291.8|Name=mRNA_P-littoralis_Contig1.291.8|organism=Pylaiella littoralis U1_48|type=CDS|length=381bp|location=Sequence derived from alignment at P-littoralis_Contig1:1384487..1386070- (Pylaiella littoralis U1_48)
ATGCTACTAAAGCATGATCGGAAAGGGACGGAACCACCAGCCTGGCTCTT
GAAGCTACTCATGCCCGTGACAGACGACCAGCTGCGCTCATCAGTGGAGA
CCCACTCCACCAAAATTGCGAGTCTGGTCTCCGCGGTCAAGAGTCTCCAA
GAACAACGAACCCAACCTCCATCTCGGGGCCGCAGCCGCGACGGGAGTAA
GAAGCGGGAGCACACCAAACACCAGGGGTCTGGCAGGACCAAAATCCTAA
AGAAAGATTTTGCTCCATGCACATACCCCGGGTGCTACCGTCCGCACACT
CACCCCGTTGAGGACTGCGGTCACCGCAGGAACGACGAGAAGCACGGGTT
CGTCCGCACCGCCGTCACGAAGCAGGGATGA
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