mRNA_P-littoralis_Contig112.91.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig112.91.1
Unique NamemRNA_P-littoralis_Contig112.91.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig112.91.1 vs. uniprot
Match: D7G0T4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0T4_ECTSI)

HSP 1 Score: 204 bits (520), Expect = 6.250e-57
Identity = 173/306 (56.54%), Postives = 191/306 (62.42%), Query Frame = 1 
Query:    1 MRTVAFVCAAAACAGGADAFAGSMRPASASVRRAGPSS-VRMASDMTVPELLKKTEELKLLSTASXXXXXXXXXXXXXXLKDVERLLPLVDENDLIGLAKGLGPDLLKVAPSALAAAPAALPLLAAGLGVPGETLYLAALGSFAAGAGLVTVLPDDSVTSIALETFVAFPLLFVFPAVLGVAGFALTGLNHRNGSLVNLITSFKPATVPAGSSPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGRPSAAARPVAALQEKMAPKAKPAPKKVRLNTQAAPKPXXXX-KPAGNIANIPKAL 912
            M+TVAF CA AACAGGADAF GSMRPAS+S+RRAGPSS VRMA+D+TVP+LLK+TE+LKLL    XXXXXXXXXXXXX LKDVE+LLPLVDENDLIGLAKG+GPDLLKVAP                                  GA LVTVLPDDSV+SIA+ETFVAFPLLFV PAV GVAGFALT L  +NGSLV+ ITS   +  PA +SP              X                    GGRP+  AR               APKK      AAPK XXXX KPAGNIAN+PKAL
Sbjct:    1 MKTVAFACAVAACAGGADAFVGSMRPASSSMRRAGPSSSVRMAADVTVPDLLKQTEKLKLLXXXXXXXXXXXXXXXXXTLKDVEKLLPLVDENDLIGLAKGVGPDLLKVAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAALVTVLPDDSVSSIAIETFVAFPLLFVLPAVCGVAGFALTSL--KNGSLVDFITS-TASPKPAAASP----------VASSXAPVAVKASKPSAPAAAPKSSGGRPAVGARSXXXXXXXXXXXXA-APKK------AAPKXXXXXXKPAGNIANLPKAL 286
[Close]
BLAST of mRNA_P-littoralis_Contig112.91.1 vs. uniprot
Match: A0A835Z532_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z532_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 1.800e-18
Identity = 95/199 (47.74%), Postives = 115/199 (57.79%), Query Frame = 1 
Query:    1 MRTVAFVCAAAACAGGADAFA--GSMRPASASVRRAGPSSVRMA-SDMTVPELLKKTEELKLLSTASXXXXXXXXXXXXXXLKDVERLLPLVDENDLIGLAKGLGPDLLKVAPSALAAAPAALPLLAAGLGVPGETLYLAALGSFAAGAGLVTVLPDDSVTSIALETFVAFPLLFVFPAVLGVAGFALTGLNHRNGSLV 588
            ++ +A   A AACA  ADAFA  GS+RPA   V R G   + MA S  +V ELL KTEELKLLSTASXXXXXXXXXXXX  L+D+E  LP +D+ D I L K L PDLL +AP AL A                  L   A  S  AG   +  +PDDS+ +IAL+ F+A PLL + P    V    LT  N  +G+LV
Sbjct:    2 VKAIAAAAAIAACATSADAFAVPGSVRPA---VARRG---MTMAVSKGSVQELLIKTEELKLLSTASXXXXXXXXXXXXLTLRDLEAALPFLDDIDAIALGKELSPDLLAIAPKALEAXXXXXXXXXXXXXXXXXALLTGAALSVVAGLAAIAAIPDDSIGAIALQAFLAVPLLVLAPGAAVVGAGVLTKAN--DGTLV 192
[Close]
BLAST of mRNA_P-littoralis_Contig112.91.1 vs. uniprot
Match: A0A7S4EDC9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EDC9_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 5.660e-12
Identity = 52/132 (39.39%), Postives = 73/132 (55.30%), Query Frame = 1 
Query:  151 LKKTEELKLLSTASXXXXXXXXXXXXXXLKDVERLLPLVDENDLIGLAKGLGPDLLKVAPSALAAAPAALPLLAAGLGVPGETLYLAALGSFAAGAGLVTVLPDDSVTSIALETFVAFPLLFVFPAVLGVAG 546
            L+  EE +LL+  +              L D+E LL   +EN L+GL   L  DLL + P  +  AP  LP+++  LG+ G   +L A+ SF  GA +VT LPDDSVT +AL+T +A PL  +FP + G  G
Sbjct:   39 LEVVEETQLLTKLAKTGLLSKAERAGVKLADLEPLLLFAEENGLVGLLGDLNDDLLPLLPLLVRLAPLGLPVVSLALGL-GPLNFLLAIASFG-GAFVVTGLPDDSVTDVALQTLIAVPLATLFPVLFGGLG 168
[Close]
BLAST of mRNA_P-littoralis_Contig112.91.1 vs. uniprot
Match: A0A8J2X3T7_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X3T7_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 7.560e-12
Identity = 52/132 (39.39%), Postives = 73/132 (55.30%), Query Frame = 1 
Query:  151 LKKTEELKLLSTASXXXXXXXXXXXXXXLKDVERLLPLVDENDLIGLAKGLGPDLLKVAPSALAAAPAALPLLAAGLGVPGETLYLAALGSFAAGAGLVTVLPDDSVTSIALETFVAFPLLFVFPAVLGVAG 546
            L+  EE +LL+  +              L D+E LL   +EN L+GL   L  DLL + P  +  AP  LP+++  LG+ G   +L A+ SF  GA +VT LPDDSVT +AL+T +A PL  +FP + G  G
Sbjct:   52 LEVVEETQLLTKLAKTGLLSKAERAGVKLADLEPLLLFAEENGLVGLLGDLNDDLLPLLPLLVRLAPLGLPVVSLALGL-GPLNFLLAIASFG-GAFVVTGLPDDSVTDVALQTLIAVPLATLFPVLFGGLG 181
[Close]
BLAST of mRNA_P-littoralis_Contig112.91.1 vs. uniprot
Match: A0A0G4F6S3_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4F6S3_VITBC)

HSP 1 Score: 71.6 bits (174), Expect = 1.520e-10
Identity = 58/146 (39.73%), Postives = 82/146 (56.16%), Query Frame = 1 
Query:  139 VPELLKKTEELKLLSTASXXXXXXXXXXXXXXLKDVERLLPLVDENDLIGLAKGLGPDLLKVAPSALAAAPAALPLLAAGLGVPGETLYLAALGSFAAGAGLVTVLPDDSVTSIALETFVAFPLLFVFPAVLGVAGFALTGLNHRN 576
            VP +LK+TEEL+LLS  +  XXXXXXXXXX  L  +E LL +VDE   +   + + P ++   P+ L        + +A L  P     L ++ SFA G G +  LPDDSVTS+AL+TF+  PL  + P V  V  F    +  ++
Sbjct:   55 VPRVLKRTEELQLLSKLAEAXXXXXXXXXXLTLSQIEPLLKVVDEQYALYGLEEVAPKIVPALPALLEXXXXXXXVASAVLSTPWFVFVLLSIASFAGGVGQLLYLPDDSVTSVALQTFLFVPLAVILPGVALVTAFITARVQSKS 200
[Close]
BLAST of mRNA_P-littoralis_Contig112.91.1 vs. uniprot
Match: A0A6U1PC24_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1PC24_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 2.880e-7
Identity = 46/142 (32.39%), Postives = 67/142 (47.18%), Query Frame = 1 
Query:  139 VPELLKKTEELKLLSTASXXXXXXXXXXXXXXLKDVERLLPLVDENDLIGLAKGLGPDLLKVAPSALAAAPAALPLLAAGLGVPGETLYLAALGSFAAGAGLVTVLPDDSVTSIALETFVAFPLLFVFPAVLGVAGFALTGL 564
            + E L K E LKLL+  S              L  +E  L L DE+ ++   +        + P A+  APA L L  + L +    L   A  S AAGA  +  +PDDS+T++AL++F+A PL+ V P    V    L+ L
Sbjct:   54 IAETLIKAENLKLLTRVSKLGLLSKAEKFGISLSKLEPFLKLADESGVLLELEKSSAKTFPLLPKAVDQAPALLSLAESALALNPSVLLAGAAASAAAGAYAIYAIPDDSITNMALQSFIAIPLIAVIPGAAVVGSTVLSKL 195
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig112.91.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7G0T4_ECTSI6.250e-5756.54Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z532_9STRA1.800e-1847.74Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4EDC9_9STRA5.660e-1239.39Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A8J2X3T7_9STRA7.560e-1239.39Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A0G4F6S3_VITBC1.520e-1039.73Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A6U1PC24_9STRA2.880e-732.39Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig112contigP-littoralis_Contig112:360228..369079 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2850.Phatr46395
PFAMsDUF1118
Model size2120
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categorychloroplast
Exons9
Evalue1.78e-06
EggNOG OGs29NG8@1|root,2RVT2@2759|Eukaryota,2XD2Y@2836|Bacillariophyta
Ec32 ortholog descriptionProtein of unknown function DUF1118
Ec32 orthologEc-23_001580.1
DescriptionProtein of unknown function (DUF1118)
Cds size915
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig112.91.1prot_P-littoralis_Contig112.91.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig112 360228..367874 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789450.5803618-CDS-P-littoralis_Contig112:360227..3602871680789450.5803618-CDS-P-littoralis_Contig112:360227..360287Pylaiella littoralis U1_48CDSP-littoralis_Contig112 360228..360287 +
1680789450.5959654-CDS-P-littoralis_Contig112:362902..3630281680789450.5959654-CDS-P-littoralis_Contig112:362902..363028Pylaiella littoralis U1_48CDSP-littoralis_Contig112 362903..363028 +
1680789450.6045313-CDS-P-littoralis_Contig112:363828..3639071680789450.6045313-CDS-P-littoralis_Contig112:363828..363907Pylaiella littoralis U1_48CDSP-littoralis_Contig112 363829..363907 +
1680789450.6128983-CDS-P-littoralis_Contig112:364817..3649851680789450.6128983-CDS-P-littoralis_Contig112:364817..364985Pylaiella littoralis U1_48CDSP-littoralis_Contig112 364818..364985 +
1680789450.627797-CDS-P-littoralis_Contig112:365347..3654801680789450.627797-CDS-P-littoralis_Contig112:365347..365480Pylaiella littoralis U1_48CDSP-littoralis_Contig112 365348..365480 +
1680789450.6405778-CDS-P-littoralis_Contig112:365835..3658961680789450.6405778-CDS-P-littoralis_Contig112:365835..365896Pylaiella littoralis U1_48CDSP-littoralis_Contig112 365836..365896 +
1680789450.651573-CDS-P-littoralis_Contig112:366357..3665761680789450.651573-CDS-P-littoralis_Contig112:366357..366576Pylaiella littoralis U1_48CDSP-littoralis_Contig112 366358..366576 +
1680789450.6621182-CDS-P-littoralis_Contig112:367322..3673511680789450.6621182-CDS-P-littoralis_Contig112:367322..367351Pylaiella littoralis U1_48CDSP-littoralis_Contig112 367323..367351 +
1680789450.6766171-CDS-P-littoralis_Contig112:367834..3678741680789450.6766171-CDS-P-littoralis_Contig112:367834..367874Pylaiella littoralis U1_48CDSP-littoralis_Contig112 367835..367874 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789450.6914096-UTR-P-littoralis_Contig112:367874..3690791680789450.6914096-UTR-P-littoralis_Contig112:367874..369079Pylaiella littoralis U1_48UTRP-littoralis_Contig112 367875..369079 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig112.91.1

>prot_P-littoralis_Contig112.91.1 ID=prot_P-littoralis_Contig112.91.1|Name=mRNA_P-littoralis_Contig112.91.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=305bp
MRTVAFVCAAAACAGGADAFAGSMRPASASVRRAGPSSVRMASDMTVPEL
LKKTEELKLLSTASKLGLLSKLEKAGLTLKDVERLLPLVDENDLIGLAKG
LGPDLLKVAPSALAAAPAALPLLAAGLGVPGETLYLAALGSFAAGAGLVT
VLPDDSVTSIALETFVAFPLLFVFPAVLGVAGFALTGLNHRNGSLVNLIT
SFKPATVPAGSSPSPATKAIKAAKSSASDVQKVAKSSASKAVKAAKSSGG
RPSAAARPVAALQEKMAPKAKPAPKKVRLNTQAAPKPAPKPKPAGNIANI
PKAL*
back to top

mRNA from alignment at P-littoralis_Contig112:360228..369079+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig112.91.1 ID=mRNA_P-littoralis_Contig112.91.1|Name=mRNA_P-littoralis_Contig112.91.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=8852bp|location=Sequence derived from alignment at P-littoralis_Contig112:360228..369079+ (Pylaiella littoralis U1_48)
ATGAGAACTGTCGCTTTCGTATGTGCCGCTGCGGCGTGCGCGGGTGGAGC
GGATGCGTTCGTAGGTGAGAGCAATTGGTCGGGATACACAAAATGTTATC
TCTTTGAAGGGCGACCCCTTCCTACTCGTACGGAGTGCTGGTAATCGGGT
ACCGGTATACGTACTTCGGCCAAAGTCGGAGGCCTGCGGAGGACCGCACC
CTCCGCCCTCTTGAAGCAGATGGTTGTATGAGAAAATATGGCTCACAAGC
TTGTCACGTGTCAAGGCTGTGGCGCGTTCTTGGTCTGGGCGTGTAATGGC
CGCTTGTGGAGCCAACATGAACCATCTTGGCTGATGTATGTATCATGTGT
GTGTCACAAATATCCTCGGCACCAACTTGGGCCGTGCGCCGTCGGCAGCT
TCTGGGTTTGGTGGAAGCTCCATCGCCACCTGTGTCGTATTCTCACTACT
GCTACGTGAAGCACCACTAGACACCTGTTGTTGGTCGAAACAACGTTTGT
GTGCTGTTCTTCGCTGTCATGTTCAAAGCTGAAACATATCGTTCTTGTTC
ATACATGGACAAAAAAATGTTTCGCGGGAGGGTACTGCTGTGAACACAGC
AGTACAAGCAGAAGAAGGTGGTTCACCGAGTATAGAGATGCACTGAACAT
AGAGTACCATTTCATATGATACTCTGCACTTCGAAGTACTCCGGAGTAGA
TGTTATACGAATGATGTTGTCATGATGAATGAGCGTGGTTTTAGTTTGTC
GTGTTTCAAGTCTGCTCTTGTACCTCTCTTGGCTTCTTGCAGCAACACCA
GCCGGCTGATTCTGTAGACCAGCTACGTCAAACCGGCGCTCTCCTGGCTC
TCGCATCTACTTGAATTCTGCAGCATGTTTTTTATTCGAATGATACTTCC
AATATGTACTTCGTACATACTTTCAGAGCTACAGTGGATATAACAATATG
TACTTCGTACATACTTTCAGAGCTACAAGTTGTGAAGTGTGGAGTAGTTG
TGAATACACCCACATGGTGTGTTGTACATCTGGACCTGGTATCGCACAAC
CATCTCCACTCTCTGCTGAGCCGAATACCAAAGGTCGGCATCCACTGACA
GAGATGGGTATCAGTACGCAAAAACCGGAAATTGCAAGGGTGTGTTATGT
AGGGTAACGGTATGTTCCGTAGGGTATTTAAATTGTTACAGAAGTCACAG
AGATTCTCTCTAGGGTATTGAGGTGTCCACAGAACTCACAGAAGTTCGAG
GGTATTGTGCTGACCTGTCACCGAAGTTTTCTGTAGGGTATTTGGAAAGT
TACAGATTCTCTGTAGGGTATTGAGGTGTCCACAGAACCCACAGATTCTC
TGTAGGGTATTGGGGTGTCCACAGAACCTTCTGTAGTATTCAAAGTGCAC
AGAGCTACAGAAGTTCTCTGTAGTGTATCTAGGTGTCCACAGAACTTACA
GACGTTTGGGGGTATTGTGGAGACTTGTCACAGAACTTTCGATAGGGTAT
TCAAAGCGCACAGAGCTACAGAAGTTCTGTAGGGTATCGAGGTGTCCACA
GAACTCACAGAGATTTTCTGTAGGGTATTGGCGTGTCACAGATGGTAATG
ACCCCCTGTGCTCCCCTTTACATATACGGATATACCTACCCGCATGACTG
CATATCGCACTGACGGTGCCTTTAGCGCTGTGCTCGACACAACACAACAG
CACACATCATCAGCAGCACCACCACCACGAGGGCGTCACACACAGAACCA
GCAACACAGCACCAGAGCAGCAAGCACTGCGCCGGCAGAGTATCACAAGC
AACCAGCAACATGGCCGAAACTGGTCCTGCCGGGAGCCCAAGCAGCACGT
ACGGAGATTTAGATCTACGCTTCTCCTTTGTAGCTTTCGCACAGAAGTAC
AGAGCCGGTTGTGAACAGATGTGGTGTTTGCGGCTGAGGGGACCGTCTTT
ATAATCCTACAGCAGTACCTTCACCTTCCAAGTACCTCCAAAACACTTTG
TAGTTTCGTTCGTGGGCCTGACGTCAGTCACAACCTGGTGGGGAAGTCTT
CGTAGCTCTGTACCCCGGTACTCGTCGCACGCGGTTCCTTTTGCCTTGTT
CGTGATTTGAGTGTTGATCCTTGCGAATCAAAAGCAAGGTCTTTTTTTTT
TCTTGGAAGAATGACGTTGTGCTCTTCGTACTTTGAAGCATATCGCGGGA
AAAAAAGTCGTACTCCGGAGTACTTAAAACCTCAGTTTCGAGGCAGTCTA
CGCAACGAGCTTTTTTGTGGTGTGGTATGATACCGCGAAAACCAAGCCGT
AAATTCTTCATCAACAGGCAACATCAGGGCGCAGTGTTGCCACCTGTATC
CAAAAATCGCATCATGCACGACAAGAAATCATTTTAGACTCAAGCAAGAG
CTTCATATGATACCACAAAAGCCGCGCTAAAATTTTCAGAATTGTCCCAC
CCGTGCATGCGATGTTGCTACTGCAGTACAGTAGGCGGTACTTTTCTGGC
CGTCGCTGCACACCTGACGAAGGCGGGCCCGCTTTTAGCTTGGGCGTCTG
TTGGTCTCTCGCCTACCCCGCGCAAAAGGCGAAAGCCCCTCTCCATGGGA
TGACACTCGCGCTGATATTTGTCCGCTCATGATGTGGGGTTCCCCCTTGT
TTCACATGTTTCCCGCCCGCCCGAGGCAGGGTCAATGAGGCCGGCGTCGG
CATCCGTGCGCCGTGCGGGGCCGAGCAGCGTCCGCATGGCCTCGGACATG
ACGGTACCGGAACTCCTCAAGAAGACCGAGGAGCTGAAGCTGCTGTCGAC
GGTAAGTGAACACCTGGCGAGCGCGCCTAGAAACTTTGTGCAATTTCTGG
AAATCTATCACCGGCGGTAGATGTAGAGCGTTTTACGTGTGGCTGTGTCG
GCTCACAAGGGTGTTTATTCACAGTTGTTTTCCTTCAGACGACCTGTTGA
ACTTTTTGCAGGGGCGCCAGATCTGTGGCTACACCGAGTTTCGGATGGGC
GGGCTGACGCAGACTGTTGACAGCGAGCAGGCACAGCAGTAGGACCTGCG
CTGATTGACTCGATAATCAGCTCTGCTTCATCGACTCGCTCATATCTCGC
ATCTGATACAACATGCATTGCCGCTCCGGTTCGTTGCGAGGATCGGTTCG
TGTTTGACCCAGAAAGTACTGAAGACTGTGCTACGTGATGCTTCGAAGCA
TATTTTCTTCGTGTCTGGCACGTCGTTTTGACGATGAAGGATCAGGTTGA
ACTCGTTTGTCTAGTCGACTAAACTCTTTGTGTAGGCACAACCCATCATT
GCGGCAAAGGGATACAGCCCAATTGCACGCACGAAAATGGGTTGTAATTG
ACTTAGCCGTGTCGACGTACTTCTGCAAAATGCACCCCATATTCCCCGCG
TCGGGTGGAGACGGCACAACGAGACGCTCGCAGCATGGTTTGGCCGCTTG
ACTGAATGAGGTTGAGTTGCAAGCGAGATATTGAAAGACGGTTGACAGCG
GCGACAGAGATTTCAGACTATTGCAATTTGAAGAGTTTTTGGACAGACCG
CCTCCGTCGCCTCTGTACGCTTACACGACTGGTTACACTCATCGATCGCA
GGCGTCGAAGCTGGGGCTGCTGTCAAAGTTGGAGAAGGCGGGCCTGACTC
TTAAGGACGTGGAGAGGCTTCTCCCTCTCGGTGAGCACCATCAACAACCA
TAGAATGCGTGTCGTGTATCGCCATGGTGGGCCATTTACTCGAGTACAAC
GGAAGCAGGCAGCTATTTTACTAGTATTGGCAAGTTCAATTCGGTGGGAA
ATTATTCTTCACAGTCCGCCCCTGCGAGATGGGGTACAGCAGTGTAGGAG
GGTTCATTTTGTCGCCCGTGGACAGTGCATGTCTCTTCACAAGGTGCGCA
GTCCATGAAAAGGCATGGCCCAGAGAGGCGTGGAAGTCTGAATGGGGTCG
TGTGTACAAAACCAGGACACCACTAGACCCTTGCTGCGCCCCAGGCCTCC
CCTACCAGTTCCTTCATGGCAAGCCGGATTACCTCGAGGCACTTCGGATT
ACATTTTTTTTTCGCATTCGCATCAAAATTACGGCATCCATGAAGCGTTG
ACGTCGCTGCCCTCCAGCCAACAGAGAGCTCGATTCCTCGTACGGTATCA
TAAACTCAAGGATTTTCCTGCACTTCTGGCGCTACTTCTTCAGGAGGGAG
GGGGGGGGAGAAAATTCAGTGACTGCGGAAAATTTCAGATTGGGTAACCA
TCTCCCGACCGCAAGGCATGCAAACAACGAAGCATCGAATGCTTCGAGGG
CATGGTGTGTTGACCTCTTAGCCCCTTTGACTACCGTGTCGTCGGCCGCG
CGACTAGCCTTTTGCTTGCATACTCATGTAGTCGACGAGAGCCAGGTCGA
TCCAACAAACCTCCTCAAAATGCCTTGATTGCGTCCTGTCATGGTAGTAC
CTTCTCCCCCTTTTCCCACAACACAAACCACTTGGCATCCGCAATCTCAT
GAATACCCTAAATACTCTTTTTCGTGCTGACGTAACGTGTGAAACGTCTC
CGGTTCCCCGCACCGACCCGTTTTCTGCTCTCCCCGGTAGTGGACGAGAA
CGACCTGATCGGTCTCGCCAAGGGCCTCGGCCCTGACCTCCTCAAGGTCG
CCCCGTCAGCGCTGGCGGCCGCCCCCGCCGCACTCCCGCTCCTGGCTGCC
GGCCTCGGCGTACCGGGAGAGACGCTCTACCTCGCCGCCCTGGGTTCCTT
TGCCGCCGGTAGGATTTGACTCGCTTTTTTATGTGCGTGTGTACACGTGG
TGTGGACTCATTCATCTGCATGAGATTGGTCCCTCCACTGTGACGTCTTT
GTTGGTTTGTTCGATGTTTTACTGGGCTGAGTACTTTAGACGCCATGGAT
TGCGTTCGAACCTCTGCGTGGTTCTCCTTGGCTCGGCGTTATTCATTGCC
GGGTATGTGTTTGCGTTCGACAAGTGCGTACAATTAGTGTTGCTGCCGTC
GGTAGTTGATGCGTACGGCTGGTCTCGGTTGTCGCGTCCAGACGAACACG
ACAGGAAATAATGCGCCGAGGTTTTGATAAAAAAAATAACAACAACCTTT
CTCTCTCCAAATCGAACCAGGTGCGGGTTTGGTGACCGTGCTGCCGGATG
ACTCCGTCACGAGCATCGCCCTCGAGACGTTTGTGGCCTTCCCGCTCCTC
TTTGTATTCCCTGCCGTCCTCGGTGTCGCGGGCTTCGCGCTCACTGGCCT
GAAGTGAGCTACTGTTCTTGGGTGTGGGTGGTCGTTTTTATGAAGTGTAT
TGGGATGGGCTTGGTAGTGTGAGGTTGAGAGGGGGGTGGTTTTGTTGGAA
GGTCGCGAACGGTGTCGTTTTGGTTGGCACCCGCTACGTTCAAGAGGAGG
TTTCGCCTACAAGTCGGCAAAGTGCCAATGCTTGGGCTTCTGTTGCAATT
ATGTCCGCCAAGTTTGATGTGTTCGGCTGAAACTTAGCGAGAGGTACACG
GGCCTCTCTGGCGATTCGGTGTGTCAGTTTCGTCCCGCTTGATCTTGATG
CTAACTTCGTTTCTATTTTCGACTTGCCGCCCTTTTGGTACGCCTGGTCC
TTCTCGAGTCACAGGAACGGATCGCTGGTCAACCTCATTACGTCATTCAA
GCCGGCAACAGTACCCGCGGTAAGTCTCTGGCCGGAGTCAAAGGTGCCAA
CACCGCGGGGGCTACTTGCAGGCACTTTTTGTTCGACTCTGGCGTATTCC
CCAGTTGTTTGAAAAAACTGTCGCCGACGGAATCACCCCCGACCCTTTTT
TCGAAACTGCAGTGCTCGAGCTTGAAAGAGCCGGAACCGTCAAGACTACT
GATTTTTTGTCAAATTGCCAAGTTCAAAGTATCATACGTTTTTTCTCTTC
GACCCTTTTTAGTGTTTTATCATACTGCTGTCATAAACGAAAATTTATTG
TTGTTTTTTTCATCGGCATGGCCACAGGCTTCCTGGTGCCTCGCTCCCCC
TCCCAGCCCTTCCGATGTAATGGTGGCATCTTCTTGCTTGCACGTTCGGC
CCAAGCTGCCCCTGGCGCGTGTGACTTGATTTTCTCACAAAGCCTTTTTC
CCGGGCGTGTTATTTTTTTTTCGGTGGTAGGGTTCCTCGCCCTCCCCCGC
CACCAAGGCGATAAAGGCCGCGAAGTCTTCCGCGTCCGACGTGCAGAAGG
TGGCCAAGAGTTCCGCCTCCAAGGCGGTGAAGGCAGCGAAGAGCTCCGGT
GGACGGCCTTCGGCAGCGGCAAGGCCAGTGGCAGCCCTTCAGGAGAAGAT
GGCCCCTAAGGCTAAGCCCGCGCCTAAGAAGGTGAGGCTTAACACACAGG
TGATGGGCCCGCCCACCTCAGCCATGCTGTAGTCCTTTTGATTCTTGCGG
TACACGTCACGGTAAGTGCTCTCAGCACTGGATTATGTTTGCTGCGTGCG
TTGTTGTTTTTTTTTCTCACGGTGATCCCTAAGCCCGTCTCGAGTCGTAA
AGACGGCTACACGATTTTTGGTGGTTGGAGTAGTGGCCTTCTCTTTCAAT
CGGTAGCACAGGCCGAAATTGGCTGTCACGCGGCTTGAAAATGCGACCAA
GCGTTGCTTGTATGTATGATACGTTTTTGTGTGCTGTGGAGTGAGGTTTC
ATGGAGAGGGTTTACTTGCTGTACAAGTTTGTCGTTGGTCGGAGAGAGCA
ATGGAGCATCCGGTCTTACAGCAGAGGATTGGAGAGAAATCTGTTTCAAA
GGAATGCTGTGTCGCTTGGCAGTAGCTCTTTCCGTCGACGGTATCGATCA
CGATAAAGCTTTTGGCTTGGCGAGGTGTAAACGATTTTTAGAGCCTCCGC
TTGCGCCCGTGGCACAAGCAGGGCTTCCAGACCTGACTCTCATCGATGCG
TCATCAACCGCGAGAGGTTGCAAAAAGGACCGTTGAGCCCTTTCTCGGAA
TGCCAACCCCAACGATACCTCTACAAAACCCAAAGCGACACTGTACGGGT
GCAACCCAGTTAATTGTTGTTTCCCGTGTTCGTCCCACTCGCTCTCCGTC
CTGTTTCTTCGCCGCTCCCGCCTCAATCTCCTGCCTGGATTGTAGGCCGC
CCCCAAGCCGGCTCCCAAGCCCAAGTAAGTGTTACTGGCATGTTTTATTC
AGAGAGAGAAGATACGCCGCGGAAGTAGATGAGGCAGATACTGCTACTGT
CAAAAAAGATACGCGCGCAGACCTAAAAGGCAGGCATTGTAATCAAAGGG
CAAGAAATCCCGTGGCAAAGCTACCAACACGGCGGGACAGATTCGTCCCA
GTGGTCATCTTTCTTGCCGCGGTACACTTCTTTTTTTGGGGCTTTCGTAA
TTTTGCTGGATGTTTGGTTTGTGTCACCCTGGCGCTTGCCCTGGGTTTCC
CTTAGTTGGCGTGTGTTGTTTCCGGGACCAAAATCAGCTCTCACCGCCGG
CAGCAACCAGTATTCTCCATGCCCATGGCACTCGGTCATCCGGCCAGATC
ATCTCGATCCGTTTATCCATCCCTTAAACGTCTTGATGAACTTCTCTCGT
GCCCTCTTCTTCGTTTTCCTCCCCCCGTATCTGCCGCTGCTACACCTGAA
ACTACAGGCCTGCGGGAAACATCGCCAACATCCCCAAGGCCCTCTAAATC
TGTCTTTCCTAGGATTTGAGAAACATTCCATGATCGAGAGAGACCCCACC
TCCTTCGTTCTCAGCGTTTGTTCCAGGACACTTCGTTGGGCGACATAGTT
TTTGGGTTGCAGGTGGCGGTTAAGGCAGCAGTGGGATTGTTGTAGTTTGT
GAACAAACTATGCCCCGCCCCGCAATCGCTCCAGTGGAATACGGAAAGAT
GAATCTGCCCAACGCCTGAAAAGCTTGAGTTTTCGTGCGTGTGGTTGAAA
TCTAGTTCGGGTGGCGTGATCTTTTCTAGAGCGTAAATTTTCACGGTCAA
GTTGGCCCATGTATACGCTAGAGTCAAAGGTGTTAGCTCTGCAGGGTAGG
CCTCCTTTCTTTTTCGAGCCCGCCCGATTTCTTTGTGGCGGTTACTGCTG
TGACCTCTTGCAGGCCATCTCATAGAATCCACGATTTTGTTTTTGTCCTC
TTGAACTATTTTGCACGGTGTTGCGGCCTTCGGCACGCATCAGAACGCAT
CAGAACAAGGATGTCATGTCAAGCTTGCCCCCCCCCTTTTTTTCTCCTGG
AACATCCTCGGGTAAAGTGCAACAACAAAAGAAGAAATTTTCGTATGTCT
GCATGCGCCGGGTATGCCGTACTGTAACGCTTCAAAGCTGCGTGGCGCTT
TGTTGGTGGCTGCTCGAACTGTAAACTGCTGTACGTGGACATTGACGGAA
CTACAGGGTCTGCGGAATTCCTTGTCCGCACATTTCATACGATGTACCGG
TACGAAGTACAAGTATTTTTTTAATTGGAAATTGTTCGCTGTCACCACGC
AGGGTTGGAAGTGCCGTTGATACGCTGGCATGTGTGTGTTGTCGTCCCTT
CCATTCTAGACGCCAGTCTACACCTTGATCGGTGTGATTTGGGCACGCCA
GCCGGGGGGCGGGCACACAGGAGGAAGGTCAACATGTTTTTTTTTTGTAA
CACACAAGGGTAGATAAGAGTGGACAGAGACAACGAACCGGGGAGCCGTT
GCTGCCTCCGTTGCCGAACACCAGCAGAAGACCGATGCAACTTACGGCTG
CCCCGAAAAAAATCGAACTCACCACTCCCGTGCCAGCAGCAGCACAGCAA
GCAGTAGTAGTACTACGCGAAACCAAGCGGGCTGATGATGGCACAAGCAG
ACGTATCCGGCCTGTGTGGCACCAATGATAAAGCTACGTACGACGTTCGA
AG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig112:360228..369079+

>mRNA_P-littoralis_Contig112.91.1 ID=mRNA_P-littoralis_Contig112.91.1|Name=mRNA_P-littoralis_Contig112.91.1|organism=Pylaiella littoralis U1_48|type=CDS|length=915bp|location=Sequence derived from alignment at P-littoralis_Contig112:360228..369079+ (Pylaiella littoralis U1_48)
ATGAGAACTGTCGCTTTCGTATGTGCCGCTGCGGCGTGCGCGGGTGGAGC
GGATGCGTTCGCAGGGTCAATGAGGCCGGCGTCGGCATCCGTGCGCCGTG
CGGGGCCGAGCAGCGTCCGCATGGCCTCGGACATGACGGTACCGGAACTC
CTCAAGAAGACCGAGGAGCTGAAGCTGCTGTCGACGGCGTCGAAGCTGGG
GCTGCTGTCAAAGTTGGAGAAGGCGGGCCTGACTCTTAAGGACGTGGAGA
GGCTTCTCCCTCTCGTGGACGAGAACGACCTGATCGGTCTCGCCAAGGGC
CTCGGCCCTGACCTCCTCAAGGTCGCCCCGTCAGCGCTGGCGGCCGCCCC
CGCCGCACTCCCGCTCCTGGCTGCCGGCCTCGGCGTACCGGGAGAGACGC
TCTACCTCGCCGCCCTGGGTTCCTTTGCCGCCGGTGCGGGTTTGGTGACC
GTGCTGCCGGATGACTCCGTCACGAGCATCGCCCTCGAGACGTTTGTGGC
CTTCCCGCTCCTCTTTGTATTCCCTGCCGTCCTCGGTGTCGCGGGCTTCG
CGCTCACTGGCCTGAATCACAGGAACGGATCGCTGGTCAACCTCATTACG
TCATTCAAGCCGGCAACAGTACCCGCGGGTTCCTCGCCCTCCCCCGCCAC
CAAGGCGATAAAGGCCGCGAAGTCTTCCGCGTCCGACGTGCAGAAGGTGG
CCAAGAGTTCCGCCTCCAAGGCGGTGAAGGCAGCGAAGAGCTCCGGTGGA
CGGCCTTCGGCAGCGGCAAGGCCAGTGGCAGCCCTTCAGGAGAAGATGGC
CCCTAAGGCTAAGCCCGCGCCTAAGAAGGTGAGGCTTAACACACAGGCCG
CCCCCAAGCCGGCTCCCAAGCCCAAGCCTGCGGGAAACATCGCCAACATC
CCCAAGGCCCTCTAA
back to top