mRNA_P-littoralis_Contig112.87.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig112.87.1
Unique NamemRNA_P-littoralis_Contig112.87.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig112.87.1 vs. uniprot
Match: A0A6H5JNH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNH6_9PHAE)

HSP 1 Score: 198 bits (504), Expect = 6.590e-64
Identity = 96/101 (95.05%), Postives = 98/101 (97.03%), Query Frame = 2 
Query:   41 DVLKEVLFLRQVWRFMLPTAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEYQHADFLTKAISRESFDLHRGFVMNLQ 343
            DVLKEVLFLRQVWRFMLP AGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSE+QHADFLTKAIS+ESF LHR FVMNLQ
Sbjct:   19 DVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESFALHRDFVMNLQ 119
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BLAST of mRNA_P-littoralis_Contig112.87.1 vs. uniprot
Match: A0A6H5JTT9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT9_9PHAE)

HSP 1 Score: 185 bits (469), Expect = 7.110e-58
Identity = 90/100 (90.00%), Postives = 92/100 (92.00%), Query Frame = 2 
Query:   41 DVLKEVLFLRQVWRFMLPTAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEYQHADFLTKAISRESFDLHRGFVMNL 340
            DVLKEVLFLRQVWRFMLP AGMPCIPVFEDN   IQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSE+QH D LTKAIS+ESF LHR FVMNL
Sbjct:   69 DVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNNQRIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHVDSLTKAISKESFALHRDFVMNL 168
[Close]
BLAST of mRNA_P-littoralis_Contig112.87.1 vs. uniprot
Match: A0A6H5KP70_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP70_9PHAE)

HSP 1 Score: 190 bits (482), Expect = 7.220e-58
Identity = 92/101 (91.09%), Postives = 96/101 (95.05%), Query Frame = 2 
Query:   41 DVLKEVLFLRQVWRFMLPTAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEYQHADFLTKAISRESFDLHRGFVMNLQ 343
            DVLKEVLFLRQVWRFMLP AGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISIT+V + +QHADFLTKAIS+ESF LHR FVMNLQ
Sbjct:  221 DVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITNVPTPFQHADFLTKAISKESFALHRDFVMNLQ 321
[Close]
BLAST of mRNA_P-littoralis_Contig112.87.1 vs. uniprot
Match: A0A6H5K684_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K684_9PHAE)

HSP 1 Score: 189 bits (480), Expect = 1.490e-57
Identity = 91/98 (92.86%), Postives = 94/98 (95.92%), Query Frame = 2 
Query:   41 DVLKEVLFLRQVWRFMLPTAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEYQHADFLTKAISRESFDLHRGFVM 334
            DVLKEVLFLRQVWRFMLP AGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSE+QHADFLTKA S+ESF LHR FV+
Sbjct:  211 DVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKATSKESFALHRDFVI 308
[Close]
BLAST of mRNA_P-littoralis_Contig112.87.1 vs. uniprot
Match: A0A6H5L4G9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G9_9PHAE)

HSP 1 Score: 189 bits (481), Expect = 4.350e-57
Identity = 91/101 (90.10%), Postives = 95/101 (94.06%), Query Frame = 2 
Query:   41 DVLKEVLFLRQVWRFMLPTAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEYQHADFLTKAISRESFDLHRGFVMNLQ 343
            DVLKEVLFLRQVWRFMLP A MPCIPVFEDNQGAIQI HNPITNSNSKHIDVRHHFIRELVERKEISITHV +++QHADFLTKAIS+ESF LHR FVMNLQ
Sbjct:  276 DVLKEVLFLRQVWRFMLPDASMPCIPVFEDNQGAIQIMHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTQFQHADFLTKAISKESFALHRDFVMNLQ 376
[Close]
BLAST of mRNA_P-littoralis_Contig112.87.1 vs. uniprot
Match: A0A6H5JEF2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEF2_9PHAE)

HSP 1 Score: 191 bits (485), Expect = 4.870e-57
Identity = 92/101 (91.09%), Postives = 95/101 (94.06%), Query Frame = 2 
Query:   41 DVLKEVLFLRQVWRFMLPTAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEYQHADFLTKAISRESFDLHRGFVMNLQ 343
            DVLKEVLFLRQVWRFMLP AGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHV + +QHADFLTKAIS+ES  LHR FVMNLQ
Sbjct:  338 DVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTHFQHADFLTKAISKESLGLHRDFVMNLQ 438
[Close]
BLAST of mRNA_P-littoralis_Contig112.87.1 vs. uniprot
Match: A0A6H5JHY5_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY5_9PHAE)

HSP 1 Score: 198 bits (504), Expect = 1.120e-56
Identity = 96/101 (95.05%), Postives = 98/101 (97.03%), Query Frame = 2 
Query:   41 DVLKEVLFLRQVWRFMLPTAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEYQHADFLTKAISRESFDLHRGFVMNLQ 343
            DVLKEVLFLRQVWRFMLP AGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSE+QHADFLTKAIS+ESF LHR FVMNLQ
Sbjct: 1372 DVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESFALHRDFVMNLQ 1472
[Close]
BLAST of mRNA_P-littoralis_Contig112.87.1 vs. uniprot
Match: A0A6H5L3H4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3H4_9PHAE)

HSP 1 Score: 187 bits (476), Expect = 5.470e-56
Identity = 90/97 (92.78%), Postives = 92/97 (94.85%), Query Frame = 2 
Query:   41 DVLKEVLFLRQVWRFMLPTAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEYQHADFLTKAISRESFDLHRGFV 331
            DVLKEVLFLRQVWRFMLP  GMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSE+QHADFLTKAIS+ESF LHR F 
Sbjct:  313 DVLKEVLFLRQVWRFMLPDTGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESFALHRDFA 409
[Close]
BLAST of mRNA_P-littoralis_Contig112.87.1 vs. uniprot
Match: A0A6H5K9U4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9U4_9PHAE)

HSP 1 Score: 194 bits (492), Expect = 1.040e-55
Identity = 94/101 (93.07%), Postives = 96/101 (95.05%), Query Frame = 2 
Query:   41 DVLKEVLFLRQVWRFMLPTAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEYQHADFLTKAISRESFDLHRGFVMNLQ 343
            DVLKEVLFLRQVWRFM P A MPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSE+QHADFLTKAIS+ESF LHR FVMNLQ
Sbjct:  679 DVLKEVLFLRQVWRFMWPDASMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESFALHRDFVMNLQ 779
[Close]
BLAST of mRNA_P-littoralis_Contig112.87.1 vs. uniprot
Match: A0A6H5KQN5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQN5_9PHAE)

HSP 1 Score: 194 bits (492), Expect = 1.560e-55
Identity = 93/101 (92.08%), Postives = 98/101 (97.03%), Query Frame = 2 
Query:   41 DVLKEVLFLRQVWRFMLPTAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEYQHADFLTKAISRESFDLHRGFVMNLQ 343
            DVLKEVLFLRQVWRFMLP AGMPCIPVFEDNQGAIQIA+NPITNSNSKHIDVRHHFIRELVERKEISITHVTSE+QHADFLTKAIS+ESF LHR FVMN++
Sbjct:  728 DVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAYNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESFALHRDFVMNMR 828
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig112.87.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JNH6_9PHAE6.590e-6495.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTT9_9PHAE7.110e-5890.00Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KP70_9PHAE7.220e-5891.09Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K684_9PHAE1.490e-5792.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L4G9_9PHAE4.350e-5790.10Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JEF2_9PHAE4.870e-5791.09Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JHY5_9PHAE1.120e-5695.05Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5L3H4_9PHAE5.470e-5692.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9U4_9PHAE1.040e-5593.07Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KQN5_9PHAE1.560e-5592.08Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig112contigP-littoralis_Contig112:315621..315966 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog90675.XP_010506885.1
PFAMsPhyH
Model size346
Max annot lvl35493|Streptophyta
KEGG koko:K00477
KEGG Pathwayko04146,map04146
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0008152,GO:0016020,GO:0016491,GO:0016705,GO:0016706,GO:0044464,GO:0048244,GO:0051213,GO:0055114,GO:0071944
Exons1
Evalue1.75e-15
EggNOG OGsCOG2801@1|root,COG5285@1|root,KOG0017@2759|Eukaryota,KOG3290@2759|Eukaryota,37PY8@33090|Viridiplantae,3GG3P@35493|Streptophyta,3HYAG@3699|Brassicales
EC1.14.11.18
DescriptionPhytanoyl-CoA dioxygenase (PhyH)
Cds size261
COG categoryI
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789450.325358-CDS-P-littoralis_Contig112:315620..3158811680789450.325358-CDS-P-littoralis_Contig112:315620..315881Pylaiella littoralis U1_48CDSP-littoralis_Contig112 315621..315881 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789450.337727-UTR-P-littoralis_Contig112:315881..3159661680789450.337727-UTR-P-littoralis_Contig112:315881..315966Pylaiella littoralis U1_48UTRP-littoralis_Contig112 315882..315966 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig112.87.1prot_P-littoralis_Contig112.87.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig112 315621..315881 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig112.87.1

>prot_P-littoralis_Contig112.87.1 ID=prot_P-littoralis_Contig112.87.1|Name=mRNA_P-littoralis_Contig112.87.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=87bp
MLPTAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKE
ISITHVTSEYQHADFLTKAISRESFDLHRGFVMNLQ*
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mRNA from alignment at P-littoralis_Contig112:315621..315966-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig112.87.1 ID=mRNA_P-littoralis_Contig112.87.1|Name=mRNA_P-littoralis_Contig112.87.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=346bp|location=Sequence derived from alignment at P-littoralis_Contig112:315621..315966- (Pylaiella littoralis U1_48)
GTGAGTTTTCTAGAAGTAGTGCCGTTTGTATTTTTCGATTGATGTCTTGA
AGGAAGTGTTGTTTTTGAGGCAGGTTTGGCGTTTTATGTTGCCAACAGCG
GGCATGCCTTGCATCCCAGTGTTCGAGGACAACCAGGGTGCGATTCAGAT
CGCCCACAATCCAATCACCAACTCGAACTCGAAGCACATAGACGTACGGC
ATCATTTTATCAGGGAACTGGTAGAGAGGAAGGAGATTTCGATCACACAC
GTGACGTCGGAATATCAGCATGCAGATTTCTTGACGAAAGCAATCAGCAG
GGAGTCTTTTGACCTGCACCGTGGTTTTGTGATGAATTTGCAATGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig112:315621..315966-

>mRNA_P-littoralis_Contig112.87.1 ID=mRNA_P-littoralis_Contig112.87.1|Name=mRNA_P-littoralis_Contig112.87.1|organism=Pylaiella littoralis U1_48|type=CDS|length=261bp|location=Sequence derived from alignment at P-littoralis_Contig112:315621..315966- (Pylaiella littoralis U1_48)
ATGTTGCCAACAGCGGGCATGCCTTGCATCCCAGTGTTCGAGGACAACCA
GGGTGCGATTCAGATCGCCCACAATCCAATCACCAACTCGAACTCGAAGC
ACATAGACGTACGGCATCATTTTATCAGGGAACTGGTAGAGAGGAAGGAG
ATTTCGATCACACACGTGACGTCGGAATATCAGCATGCAGATTTCTTGAC
GAAAGCAATCAGCAGGGAGTCTTTTGACCTGCACCGTGGTTTTGTGATGA
ATTTGCAATGA
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