mRNA_P-littoralis_Contig112.16.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig112.16.1
Unique NamemRNA_P-littoralis_Contig112.16.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig112.16.1 vs. uniprot
Match: A0A6H5KTD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTD3_9PHAE)

HSP 1 Score: 218 bits (555), Expect = 2.250e-64
Identity = 102/161 (63.35%), Postives = 119/161 (73.91%), Query Frame = 2 
Query:   29 VHSARAKHANKAQGPLEWVTANIPDGFTHDQHYTAEAHGVDLPVSIHQGVRQSDLERGCVWVIEYFERELNTKWSKEPELLLVCYDRAELVPIIRGHEQLGRTEKTGVCDRKFDPKSTDPIPSPQFQGWLRAGAKEARDGVAANLAMKVLADPKWTGSNPP 511
            V +  AKHANKA GP +WV  +  DGF  D  Y A+AHGVDLPVSIHQGV    LE+G   VI+YF+R+L +KW +  ELL+VCYDR ELVP+I+G EQLGRTEK G C R FDPKSTDP+PS Q+  WLRA  K ARDG+AANLAM+VLAD  WTG   P
Sbjct:  186 VRNTGAKHANKAAGPGKWVREHCADGFADDPFYDADAHGVDLPVSIHQGVHPEYLEKGTAGVIDYFKRQLLSKWLQPTELLMVCYDRQELVPVIKGQEQLGRTEKLGECSRTFDPKSTDPVPSLQYGPWLRADGKAARDGIAANLAMRVLADEVWTGDTKP 346
[Close]
BLAST of mRNA_P-littoralis_Contig112.16.1 vs. uniprot
Match: A0A6H5KXZ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXZ6_9PHAE)

HSP 1 Score: 208 bits (529), Expect = 1.580e-63
Identity = 97/156 (62.18%), Postives = 115/156 (73.72%), Query Frame = 2 
Query:   44 AKHANKAQGPLEWVTANIPDGFTHDQHYTAEAHGVDLPVSIHQGVRQSDLERGCVWVIEYFERELNTKWSKEPELLLVCYDRAELVPIIRGHEQLGRTEKTGVCDRKFDPKSTDPIPSPQFQGWLRAGAKEARDGVAANLAMKVLADPKWTGSNPP 511
            AKHA KA GP +WV  +  DGF  D  Y A+A GVDLPVSIHQG+R   LE+G   +I+YF+R+L +KW +  E LLVCYDR +LVP+I+G EQLGRTEK GVC R FDPKSTDP+PS Q+  WLRA  K ARDG+AA LAM+VLAD  WTG   P
Sbjct:   39 AKHATKAAGPGKWVREHCADGFAEDPSYDADARGVDLPVSIHQGMRPEYLEKGTAGIIDYFKRQLLSKWLQSTEPLLVCYDRQDLVPVIKGQEQLGRTEKLGVCSRTFDPKSTDPVPSLQYGPWLRADGKAARDGIAAYLAMRVLADEVWTGYTKP 194
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BLAST of mRNA_P-littoralis_Contig112.16.1 vs. uniprot
Match: A0A6H5JAK2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAK2_9PHAE)

HSP 1 Score: 215 bits (548), Expect = 2.630e-63
Identity = 100/156 (64.10%), Postives = 116/156 (74.36%), Query Frame = 2 
Query:   44 AKHANKAQGPLEWVTANIPDGFTHDQHYTAEAHGVDLPVSIHQGVRQSDLERGCVWVIEYFERELNTKWSKEPELLLVCYDRAELVPIIRGHEQLGRTEKTGVCDRKFDPKSTDPIPSPQFQGWLRAGAKEARDGVAANLAMKVLADPKWTGSNPP 511
            AKHANKA GP +WV  +  DGF  D  Y A+AHGVDLPVSIHQGV    LE+G   +I+YF+R+L + W +  ELLLVCYDR ELVP+I+G EQLGRTEK G C R FDPKSTDP+PS Q+  WLRA  K ARDG+AANLAM+VLAD  WTG   P
Sbjct:  245 AKHANKAAGPGKWVREHCADGFADDPFYDADAHGVDLPVSIHQGVHPEYLEKGTAGIIDYFKRQLLSTWLQSTELLLVCYDRQELVPVIKGQEQLGRTEKLGECSRTFDPKSTDPVPSLQYGPWLRADGKAARDGIAANLAMRVLADEVWTGDTKP 400
[Close]
BLAST of mRNA_P-littoralis_Contig112.16.1 vs. uniprot
Match: A0A6H5JZK8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZK8_9PHAE)

HSP 1 Score: 201 bits (511), Expect = 2.600e-62
Identity = 95/156 (60.90%), Postives = 109/156 (69.87%), Query Frame = 2 
Query:   44 AKHANKAQGPLEWVTANIPDGFTHDQHYTAEAHGVDLPVSIHQGVRQSDLERGCVWVIEYFERELNTKWSKEPELLLVCYDRAELVPIIRGHEQLGRTEKTGVCDRKFDPKSTDPIPSPQFQGWLRAGAKEARDGVAANLAMKVLADPKWTGSNPP 511
            AKHANKA GP +WV  +  DGF  D  Y A+AHG+DLP SIHQGV    LE G    I+YF+R+L   W +  ELLLVCYDR ELVP+I+G EQLGRTEK G C R  DPKSTD +PS Q+  WLRA  K ARDG+AA LAM+VLAD  WTG   P
Sbjct:   39 AKHANKAAGPRKWVREHCADGFADDSFYDADAHGMDLPASIHQGVHPEYLENGTAGTIDYFKRQLLPNWLQSTELLLVCYDRQELVPVIKGQEQLGRTEKFGECSRTSDPKSTDLVPSLQYGPWLRADGKAARDGIAAYLAMRVLADEVWTGDTKP 194
[Close]
BLAST of mRNA_P-littoralis_Contig112.16.1 vs. uniprot
Match: A0A6H5KTG2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTG2_9PHAE)

HSP 1 Score: 218 bits (555), Expect = 2.750e-62
Identity = 101/161 (62.73%), Postives = 119/161 (73.91%), Query Frame = 2 
Query:   29 VHSARAKHANKAQGPLEWVTANIPDGFTHDQHYTAEAHGVDLPVSIHQGVRQSDLERGCVWVIEYFERELNTKWSKEPELLLVCYDRAELVPIIRGHEQLGRTEKTGVCDRKFDPKSTDPIPSPQFQGWLRAGAKEARDGVAANLAMKVLADPKWTGSNPP 511
            V +  AKHANKA GP +WV  +  DGF  D  Y A+AHGVDLPVSIHQGV    LE+G   +I+YF+R+L +KW +  ELL+VCYDR ELVP+I+G EQLGRTEK G C R FDPKSTDP+PS Q+  WLRA  K ARDG+AANLAM+VLAD  WTG   P
Sbjct:  329 VRNTGAKHANKAAGPGKWVREHCADGFADDPFYDADAHGVDLPVSIHQGVHPEYLEKGTAGIIDYFKRQLLSKWLQSTELLMVCYDRQELVPVIKGQEQLGRTEKLGECSRTFDPKSTDPVPSLQYGPWLRADGKAARDGIAANLAMRVLADEVWTGDTKP 489
[Close]
BLAST of mRNA_P-littoralis_Contig112.16.1 vs. uniprot
Match: A0A6H5L6D9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6D9_9PHAE)

HSP 1 Score: 217 bits (552), Expect = 1.190e-61
Identity = 100/156 (64.10%), Postives = 117/156 (75.00%), Query Frame = 2 
Query:   44 AKHANKAQGPLEWVTANIPDGFTHDQHYTAEAHGVDLPVSIHQGVRQSDLERGCVWVIEYFERELNTKWSKEPELLLVCYDRAELVPIIRGHEQLGRTEKTGVCDRKFDPKSTDPIPSPQFQGWLRAGAKEARDGVAANLAMKVLADPKWTGSNPP 511
            AKHANKA GP +WV  +  DGF  D  Y A+AHGVDLPVSIHQGV    LE+G   +I+YF+R+L +KW +  ELL+VCYDR ELVP+I+G EQLGRTEK G C R FDPKSTDP+PS Q+  WLRA  K ARDG+AANLAM+VLAD  WTG   P
Sbjct: 1353 AKHANKAAGPGKWVREHCADGFADDPFYDADAHGVDLPVSIHQGVHPEYLEKGTAGIIDYFKRQLLSKWLQSTELLMVCYDRQELVPVIKGQEQLGRTEKLGECSRTFDPKSTDPVPSLQYGPWLRADGKAARDGIAANLAMRVLADEVWTGDTKP 1508
[Close]
BLAST of mRNA_P-littoralis_Contig112.16.1 vs. uniprot
Match: A0A6H5JUY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUY2_9PHAE)

HSP 1 Score: 214 bits (544), Expect = 2.080e-61
Identity = 100/156 (64.10%), Postives = 116/156 (74.36%), Query Frame = 2 
Query:   44 AKHANKAQGPLEWVTANIPDGFTHDQHYTAEAHGVDLPVSIHQGVRQSDLERGCVWVIEYFERELNTKWSKEPELLLVCYDRAELVPIIRGHEQLGRTEKTGVCDRKFDPKSTDPIPSPQFQGWLRAGAKEARDGVAANLAMKVLADPKWTGSNPP 511
            AKHANKA GPL+ V  +  DGF  D  Y AEAHGVDLPVSIHQGV    LE+G   +I+YF+++L +KW K  +LL+VCYDR ELVP I+GHEQLGRTEK G C R FDPKSTDP+PS Q+  WLRA  K AR G+AANLAM+VLAD  WTG   P
Sbjct:   23 AKHANKAAGPLKSVREHCADGFDDDPFYRAEAHGVDLPVSIHQGVHPEHLEKGTAGIIDYFKKQLLSKWLKSTKLLVVCYDRQELVPAIKGHEQLGRTEKLGECSRTFDPKSTDPVPSLQYGSWLRADGKAARAGIAANLAMRVLADDVWTGDTKP 178
[Close]
BLAST of mRNA_P-littoralis_Contig112.16.1 vs. uniprot
Match: A0A6H5JHH4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHH4_9PHAE)

HSP 1 Score: 206 bits (523), Expect = 3.930e-59
Identity = 95/155 (61.29%), Postives = 113/155 (72.90%), Query Frame = 2 
Query:   47 KHANKAQGPLEWVTANIPDGFTHDQHYTAEAHGVDLPVSIHQGVRQSDLERGCVWVIEYFERELNTKWSKEPELLLVCYDRAELVPIIRGHEQLGRTEKTGVCDRKFDPKSTDPIPSPQFQGWLRAGAKEARDGVAANLAMKVLADPKWTGSNPP 511
            KHA+KA GP +WV  +  DGF  D  + A+AHGVDLPVSIHQGV    LE+G   +I+YF+R+L +KW +  EL LVCYDR ELVP+I+G EQLGRTEK G C R FDPKST P+PS Q+  WLRA  K ARDG+AA LAM+VLAD  WTG   P
Sbjct:    9 KHASKAAGPRKWVREHCADGFADDPFFDADAHGVDLPVSIHQGVHPEYLEKGTAGIIDYFKRQLLSKWLQSTELFLVCYDRQELVPVIKGQEQLGRTEKLGECSRTFDPKSTGPVPSLQYGPWLRADGKAARDGIAAYLAMRVLADEVWTGDTNP 163
[Close]
BLAST of mRNA_P-littoralis_Contig112.16.1 vs. uniprot
Match: A0A6H5JT24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT24_9PHAE)

HSP 1 Score: 204 bits (520), Expect = 8.850e-59
Identity = 95/156 (60.90%), Postives = 109/156 (69.87%), Query Frame = 2 
Query:   44 AKHANKAQGPLEWVTANIPDGFTHDQHYTAEAHGVDLPVSIHQGVRQSDLERGCVWVIEYFERELNTKWSKEPELLLVCYDRAELVPIIRGHEQLGRTEKTGVCDRKFDPKSTDPIPSPQFQGWLRAGAKEARDGVAANLAMKVLADPKWTGSNPP 511
            AKHANKA  PL+WV  +  DGF  D  Y A+AHGVDLPVSIHQGV    LE+G   +I+YF+++  +KW K  EL +VCYDR ELVP IRGHEQLGRTE  G C R FDPKSTDP+P      WLR   K ARDG+AANLAM+VLAD  WT    P
Sbjct:   28 AKHANKAADPLKWVREHCADGFAVDPFYGADAHGVDLPVSIHQGVHPEYLEKGTAGIIDYFKKQFFSKWLKSTELFVVCYDRQELVPAIRGHEQLGRTETLGECSRTFDPKSTDPVPLLHHGSWLRVDGKAARDGIAANLAMRVLADDVWTADTKP 183
[Close]
BLAST of mRNA_P-littoralis_Contig112.16.1 vs. uniprot
Match: A0A6H5JJI8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJI8_9PHAE)

HSP 1 Score: 205 bits (522), Expect = 1.230e-57
Identity = 94/156 (60.26%), Postives = 114/156 (73.08%), Query Frame = 2 
Query:   44 AKHANKAQGPLEWVTANIPDGFTHDQHYTAEAHGVDLPVSIHQGVRQSDLERGCVWVIEYFERELNTKWSKEPELLLVCYDRAELVPIIRGHEQLGRTEKTGVCDRKFDPKSTDPIPSPQFQGWLRAGAKEARDGVAANLAMKVLADPKWTGSNPP 511
            AKHANKA GP +WV  +  DGF  D  Y A+ HGVDLPVSIH GV +  LE+G   +I+YF+++L +KW +  ELL+VCYDR ELVP+I+GHEQLGRTEK G C R FDPKSTDP+PS Q+  WLRA  K AR  +AA+LA +VLAD  WTG   P
Sbjct:  688 AKHANKAAGPGKWVRGHCADGFADDPFYEADTHGVDLPVSIHHGVHREYLEKGTAGIIDYFKKQLLSKWLQSTELLVVCYDRQELVPVIKGHEQLGRTEKLGECSRTFDPKSTDPVPSLQYGPWLRADGKAARVEIAAHLATRVLADDVWTGDTKP 843
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig112.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KTD3_9PHAE2.250e-6463.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KXZ6_9PHAE1.580e-6362.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAK2_9PHAE2.630e-6364.10Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JZK8_9PHAE2.600e-6260.90Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KTG2_9PHAE2.750e-6262.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6D9_9PHAE1.190e-6164.10Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUY2_9PHAE2.080e-6164.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHH4_9PHAE3.930e-5961.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JT24_9PHAE8.850e-5960.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJI8_9PHAE1.230e-5760.26Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig112contigP-littoralis_Contig112:36568..37171 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size604
Hectar predicted targeting categorymitochondrion
Exons1
Cds size384
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789447.5265574-CDS-P-littoralis_Contig112:36567..369511680789447.5265574-CDS-P-littoralis_Contig112:36567..36951Pylaiella littoralis U1_48CDSP-littoralis_Contig112 36568..36951 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789447.5381734-UTR-P-littoralis_Contig112:36951..371711680789447.5381734-UTR-P-littoralis_Contig112:36951..37171Pylaiella littoralis U1_48UTRP-littoralis_Contig112 36952..37171 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig112.16.1prot_P-littoralis_Contig112.16.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig112 36568..36951 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig112.16.1

>prot_P-littoralis_Contig112.16.1 ID=prot_P-littoralis_Contig112.16.1|Name=mRNA_P-littoralis_Contig112.16.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=128bp
PHALSRKYSRTFRTGQARQQSPRSARVGHRQHTRRLHTRPALHRRSPRGG
FAGIYPPGSETERFGEGVCVGHRVLRKGVEHKVEQGAGAPFGLLRSRGTC
ADHQRPRAARADREDWGVRSKVRPQVY*
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mRNA from alignment at P-littoralis_Contig112:36568..37171+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig112.16.1 ID=mRNA_P-littoralis_Contig112.16.1|Name=mRNA_P-littoralis_Contig112.16.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=604bp|location=Sequence derived from alignment at P-littoralis_Contig112:36568..37171+ (Pylaiella littoralis U1_48)
CCGCACGCTCTGTCGCGCAAATATTCGCGTACATTCCGCACGGGCCAAGC
ACGCCAACAAAGCCCAAGGTCCGCTCGAGTGGGTCACCGCCAACATACCC
GACGGCTTCACACACGACCAGCACTACACCGCCGAAGCCCACGGGGTGGA
TTTGCCGGTATCTATCCACCAGGGAGTGAGACAGAGCGATTTGGAGAGGG
GGTGTGTGTGGGTCATCGAGTACTTCGAAAGGGAGTTGAACACAAAGTGG
AGCAAGGAGCCGGAGCTCCTTTTGGTCTGCTACGATCGCGCGGAACTTGT
GCCGATCATCAGAGGCCACGAGCAGCTAGGGCGGACAGAGAAGACTGGGG
TGTGCGATCGAAAGTTCGACCCCAAGTCTACTGATCCAATCCCTTCACCA
CAATTTCAGGGATGGCTCCGAGCCGGCGCAAAGGAAGCTCGTGACGGAGT
CGCCGCGAACCTCGCCATGAAGGTGCTAGCAGACCCCAAATGGACAGGAA
GCAACCCGCCAAAAAAACAGTGGCATTTTATGGTGTCGGAGGCGAGCCTG
GTTTGCAGGATGACGAAGAGACCGGCTTGGGTGCAGTGGATGTCGGTGTA
GTCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig112:36568..37171+

>mRNA_P-littoralis_Contig112.16.1 ID=mRNA_P-littoralis_Contig112.16.1|Name=mRNA_P-littoralis_Contig112.16.1|organism=Pylaiella littoralis U1_48|type=CDS|length=384bp|location=Sequence derived from alignment at P-littoralis_Contig112:36568..37171+ (Pylaiella littoralis U1_48)
CCGCACGCTCTGTCGCGCAAATATTCGCGTACATTCCGCACGGGCCAAGC
ACGCCAACAAAGCCCAAGGTCCGCTCGAGTGGGTCACCGCCAACATACCC
GACGGCTTCACACACGACCAGCACTACACCGCCGAAGCCCACGGGGTGGA
TTTGCCGGTATCTATCCACCAGGGAGTGAGACAGAGCGATTTGGAGAGGG
GGTGTGTGTGGGTCATCGAGTACTTCGAAAGGGAGTTGAACACAAAGTGG
AGCAAGGAGCCGGAGCTCCTTTTGGTCTGCTACGATCGCGCGGAACTTGT
GCCGATCATCAGAGGCCACGAGCAGCTAGGGCGGACAGAGAAGACTGGGG
TGTGCGATCGAAAGTTCGACCCCAAGTCTACTGA
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