mRNA_P-littoralis_Contig112.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig112.1.1
Unique NamemRNA_P-littoralis_Contig112.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig112.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig112contigP-littoralis_Contig112:784..1770 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size987
Hectar predicted targeting categoryother localisation
Exons1
Cds size699
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789447.4739408-UTR-P-littoralis_Contig112:783..8041680789447.4739408-UTR-P-littoralis_Contig112:783..804Pylaiella littoralis U1_48UTRP-littoralis_Contig112 784..804 +
1680789447.4945776-UTR-P-littoralis_Contig112:1503..17701680789447.4945776-UTR-P-littoralis_Contig112:1503..1770Pylaiella littoralis U1_48UTRP-littoralis_Contig112 1504..1770 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789447.485985-CDS-P-littoralis_Contig112:804..15031680789447.485985-CDS-P-littoralis_Contig112:804..1503Pylaiella littoralis U1_48CDSP-littoralis_Contig112 805..1503 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig112.1.1prot_P-littoralis_Contig112.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig112 805..1503 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig112.1.1

>prot_P-littoralis_Contig112.1.1 ID=prot_P-littoralis_Contig112.1.1|Name=mRNA_P-littoralis_Contig112.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=233bp
MVAPAVKSTITVVAQGKEKSVATLGTPPVVASFGDSAGGSSSDVGSSGRD
DQRKGPSEVSDAVLLTRMHAMLGNMSLADRRSFLVVEDSLANASTPRMSV
GRGSGTVGRSAGASRPPRVTSVGRSRGVVKTRAGDSQQSSVELDAKIAER
MQQEELDSVVREEEVLARDAEFARSLQSENGEGDLSFSSTGSDACTGSRF
GVLCSSDDGDDSVASPVSVSPSVKWQVVGARG*
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mRNA from alignment at P-littoralis_Contig112:784..1770+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig112.1.1 ID=mRNA_P-littoralis_Contig112.1.1|Name=mRNA_P-littoralis_Contig112.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=987bp|location=Sequence derived from alignment at P-littoralis_Contig112:784..1770+ (Pylaiella littoralis U1_48)
GGGTTCAAAAAGAGTAAAACCATGGTTGCTCCTGCTGTCAAGTCGACCAT
TACGGTGGTAGCACAAGGTAAGGAGAAGTCGGTGGCCACGTTGGGGACGC
CGCCGGTTGTCGCGTCTTTCGGGGACTCGGCCGGGGGTTCTTCGAGTGAT
GTGGGGTCGTCTGGGAGGGACGATCAACGGAAGGGTCCGAGTGAGGTGAG
TGACGCAGTGCTGTTAACGAGGATGCACGCCATGTTGGGTAACATGTCCT
TGGCCGATCGGCGTAGTTTCCTTGTTGTCGAGGATTCTCTGGCTAATGCG
AGTACCCCGCGTATGTCGGTCGGACGGGGTAGTGGTACAGTCGGGAGGAG
CGCAGGTGCCTCTCGACCGCCGCGTGTAACGTCCGTCGGGAGGAGTCGCG
GTGTTGTTAAAACGCGTGCCGGTGACTCTCAACAGTCGAGTGTAGAGTTG
GATGCAAAGATTGCTGAGCGCATGCAACAGGAGGAATTAGACTCAGTGGT
TCGTGAGGAGGAAGTGCTCGCACGTGATGCGGAGTTTGCTCGTTCGCTTC
AGTCCGAGAATGGTGAGGGAGACTTGTCGTTCTCCTCGACGGGTTCTGAC
GCGTGTACTGGTAGCCGTTTTGGTGTGCTGTGTTCCTCTGATGATGGCGA
CGACAGTGTTGCTTCGCCGGTGTCTGTTTCGCCGTCCGTCAAATGGCAGG
TGGTGGGTGCACGGGGATGAGGGTGCGACGGAAAGAATGGGGTCACTTCT
CCGGTAGCATTTCGACCTCAAGGTGTTGGTAATTTGCAGGAAGATAAAAA
TATAACTAAGGGTCCGGAACGAAATCACACTTTGGGCACCGTAGTAAACA
AAAAAGGAAAGGGGGGTACTCAGTGTTCGGATAACAGATTAGGTTCGGAC
AAGGCTGGGACTGGAGAGGGTGACGGCTCGGCGGTGCACAACGCTGGCGT
TCGTCGGGAGATGAGGGAAGACTCGTCGAAAAATGGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig112:784..1770+

>mRNA_P-littoralis_Contig112.1.1 ID=mRNA_P-littoralis_Contig112.1.1|Name=mRNA_P-littoralis_Contig112.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=699bp|location=Sequence derived from alignment at P-littoralis_Contig112:784..1770+ (Pylaiella littoralis U1_48)
ATGGTTGCTCCTGCTGTCAAGTCGACCATTACGGTGGTAGCACAAGGTAA
GGAGAAGTCGGTGGCCACGTTGGGGACGCCGCCGGTTGTCGCGTCTTTCG
GGGACTCGGCCGGGGGTTCTTCGAGTGATGTGGGGTCGTCTGGGAGGGAC
GATCAACGGAAGGGTCCGAGTGAGGTGAGTGACGCAGTGCTGTTAACGAG
GATGCACGCCATGTTGGGTAACATGTCCTTGGCCGATCGGCGTAGTTTCC
TTGTTGTCGAGGATTCTCTGGCTAATGCGAGTACCCCGCGTATGTCGGTC
GGACGGGGTAGTGGTACAGTCGGGAGGAGCGCAGGTGCCTCTCGACCGCC
GCGTGTAACGTCCGTCGGGAGGAGTCGCGGTGTTGTTAAAACGCGTGCCG
GTGACTCTCAACAGTCGAGTGTAGAGTTGGATGCAAAGATTGCTGAGCGC
ATGCAACAGGAGGAATTAGACTCAGTGGTTCGTGAGGAGGAAGTGCTCGC
ACGTGATGCGGAGTTTGCTCGTTCGCTTCAGTCCGAGAATGGTGAGGGAG
ACTTGTCGTTCTCCTCGACGGGTTCTGACGCGTGTACTGGTAGCCGTTTT
GGTGTGCTGTGTTCCTCTGATGATGGCGACGACAGTGTTGCTTCGCCGGT
GTCTGTTTCGCCGTCCGTCAAATGGCAGGTGGTGGGTGCACGGGGATGA
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