mRNA_P-littoralis_Contig1119.8.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1119.8.1
Unique NamemRNA_P-littoralis_Contig1119.8.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1119.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1119contigP-littoralis_Contig1119:11814..12268 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size455
Hectar predicted targeting categoryother localisation
Exons1
Cds size312
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789447.011165-UTR-P-littoralis_Contig1119:11813..118181680789447.011165-UTR-P-littoralis_Contig1119:11813..11818Pylaiella littoralis U1_48UTRP-littoralis_Contig1119 11814..11818 +
1680789447.0420663-UTR-P-littoralis_Contig1119:12130..122681680789447.0420663-UTR-P-littoralis_Contig1119:12130..12268Pylaiella littoralis U1_48UTRP-littoralis_Contig1119 12131..12268 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789447.0288427-CDS-P-littoralis_Contig1119:11818..121301680789447.0288427-CDS-P-littoralis_Contig1119:11818..12130Pylaiella littoralis U1_48CDSP-littoralis_Contig1119 11819..12130 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1119.8.1prot_P-littoralis_Contig1119.8.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1119 11819..12130 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1119.8.1

>prot_P-littoralis_Contig1119.8.1 ID=prot_P-littoralis_Contig1119.8.1|Name=mRNA_P-littoralis_Contig1119.8.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=104bp
MAGEGGFVYFWLYFFGGGFRNDHHAHSSNTQQRVRSRSSAYFQAQHVTLL
LDDGRRTFQRITSYAEQQWFVENGEHESTERRDLFSLLPRNLHLLAGMAL
VSC*
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mRNA from alignment at P-littoralis_Contig1119:11814..12268+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1119.8.1 ID=mRNA_P-littoralis_Contig1119.8.1|Name=mRNA_P-littoralis_Contig1119.8.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=455bp|location=Sequence derived from alignment at P-littoralis_Contig1119:11814..12268+ (Pylaiella littoralis U1_48)
AAGTAATGGCGGGAGAGGGCGGCTTTGTTTATTTTTGGTTATACTTTTTC
GGAGGCGGTTTCCGAAACGACCACCACGCACACAGCAGCAACACACAGCA
GCGTGTACGTAGTCGATCCAGCGCGTATTTCCAAGCTCAACACGTAACTC
TTCTCTTGGATGATGGACGAAGAACCTTTCAACGTATCACTTCATATGCA
GAGCAGCAGTGGTTTGTCGAGAATGGAGAGCACGAGAGCACAGAGCGGAG
GGACTTATTTTCGCTGTTGCCCAGAAACCTTCACTTACTTGCGGGGATGG
CCCTAGTGTCCTGCTGAACATAGAACTGGCCCGACTGCTGAGAACACAGA
TATTACTTTTTGGGTAACGTATCCATGGAATGACCTCTTAGCGCTCACTG
GAACAAACTCTCACAGCAGCAGTAGTACAGGTTTCCTGAGCGTAGAGTAC
AGGGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1119:11814..12268+

>mRNA_P-littoralis_Contig1119.8.1 ID=mRNA_P-littoralis_Contig1119.8.1|Name=mRNA_P-littoralis_Contig1119.8.1|organism=Pylaiella littoralis U1_48|type=CDS|length=312bp|location=Sequence derived from alignment at P-littoralis_Contig1119:11814..12268+ (Pylaiella littoralis U1_48)
ATGGCGGGAGAGGGCGGCTTTGTTTATTTTTGGTTATACTTTTTCGGAGG
CGGTTTCCGAAACGACCACCACGCACACAGCAGCAACACACAGCAGCGTG
TACGTAGTCGATCCAGCGCGTATTTCCAAGCTCAACACGTAACTCTTCTC
TTGGATGATGGACGAAGAACCTTTCAACGTATCACTTCATATGCAGAGCA
GCAGTGGTTTGTCGAGAATGGAGAGCACGAGAGCACAGAGCGGAGGGACT
TATTTTCGCTGTTGCCCAGAAACCTTCACTTACTTGCGGGGATGGCCCTA
GTGTCCTGCTGA
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