mRNA_P-littoralis_Contig1119.15.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1119.15.1
Unique NamemRNA_P-littoralis_Contig1119.15.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1119.15.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1119contigP-littoralis_Contig1119:18195..18390 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size169
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size168
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789446.9599805-CDS-P-littoralis_Contig1119:18194..182801680789446.9599805-CDS-P-littoralis_Contig1119:18194..18280Pylaiella littoralis U1_48CDSP-littoralis_Contig1119 18195..18280 -
1680789446.9739833-CDS-P-littoralis_Contig1119:18308..183901680789446.9739833-CDS-P-littoralis_Contig1119:18308..18390Pylaiella littoralis U1_48CDSP-littoralis_Contig1119 18309..18390 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1119.15.1prot_P-littoralis_Contig1119.15.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1119 18195..18390 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1119.15.1

>prot_P-littoralis_Contig1119.15.1 ID=prot_P-littoralis_Contig1119.15.1|Name=mRNA_P-littoralis_Contig1119.15.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=56bp
DAASCHRTWERHATRHRTDHSAHSTMHYSSPATRADTAPTRLDTAPTAAS
TPCKS*
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mRNA from alignment at P-littoralis_Contig1119:18195..18390-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1119.15.1 ID=mRNA_P-littoralis_Contig1119.15.1|Name=mRNA_P-littoralis_Contig1119.15.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=196bp|location=Sequence derived from alignment at P-littoralis_Contig1119:18195..18390- (Pylaiella littoralis U1_48)
GACGCCGCCTCCTGCCACCGGACCTGGGAAAGGCACGCCACCCGGCACAG
GACCGACCATAGCGCCCACTCCACCATGCATTGCCATGGGGGCGGAGTTG
GCGGCCCGAGACTCCAGCCCGGCTACGCGAGCAGACACGGCCCCCACGCG
ATTAGACACGGCCCCAACGGCAGCCAGCACACCCTGCAAATCCTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1119:18195..18390-

>mRNA_P-littoralis_Contig1119.15.1 ID=mRNA_P-littoralis_Contig1119.15.1|Name=mRNA_P-littoralis_Contig1119.15.1|organism=Pylaiella littoralis U1_48|type=CDS|length=168bp|location=Sequence derived from alignment at P-littoralis_Contig1119:18195..18390- (Pylaiella littoralis U1_48)
GACGCCGCCTCCTGCCACCGGACCTGGGAAAGGCACGCCACCCGGCACAG
GACCGACCATAGCGCCCACTCCACCATGCATTACTCCAGCCCGGCTACGC
GAGCAGACACGGCCCCCACGCGATTAGACACGGCCCCAACGGCAGCCAGC
ACACCCTGCAAATCCTGA
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