mRNA_P-littoralis_Contig1119.7.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1119.7.2
Unique NamemRNA_P-littoralis_Contig1119.7.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1119.7.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1119contigP-littoralis_Contig1119:9917..10711 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size166
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size162
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789446.885883-CDS-P-littoralis_Contig1119:9916..99971680789446.885883-CDS-P-littoralis_Contig1119:9916..9997Pylaiella littoralis U1_48CDSP-littoralis_Contig1119 9917..9997 +
1680789446.906759-CDS-P-littoralis_Contig1119:10628..107091680789446.906759-CDS-P-littoralis_Contig1119:10628..10709Pylaiella littoralis U1_48CDSP-littoralis_Contig1119 10629..10709 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1119.7.2prot_P-littoralis_Contig1119.7.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1119 9917..10709 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1119.7.2

>prot_P-littoralis_Contig1119.7.2 ID=prot_P-littoralis_Contig1119.7.2|Name=mRNA_P-littoralis_Contig1119.7.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=54bp
AKQDRSHANRPQRLLGSSPGCSNPRWVEIEAALHSDGVYCRRPYRCSNRP
PMSA
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mRNA from alignment at P-littoralis_Contig1119:9917..10711+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1119.7.2 ID=mRNA_P-littoralis_Contig1119.7.2|Name=mRNA_P-littoralis_Contig1119.7.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=795bp|location=Sequence derived from alignment at P-littoralis_Contig1119:9917..10711+ (Pylaiella littoralis U1_48)
GCAAAGCAAGACCGATCTCACGCCAACAGACCACAACGATTACTTGGCTC
CAGCCCGGGTTGCAGTAACCCACGGTGGGTGGTGCGTTAAGTGGCATGAC
TGGACGTTGATTGTTGTACACTTCGGATGTTAAGATAGACAGGCTGCGTG
TCCGAAGGTTTGTTTCTAATCGTTTTTTTTATCCGTAAAATAGTGCGCAG
CACACGCCCTCGGGATTGGTGGGGTTTGTTTGCCATGCTGTGTTATTTGG
GGACAGGAGTGATGTCACAGCCTGCGTGTATATTTTCGTTGCTTTTGCAT
TTCGGCGGGTTCACGAATCAAACGCGTGCATAGTGCAAATCGCGTGGGCC
GCTTATTCTATTACTTCGAAACATTTGTCATGCGGATCGCAGGGTCGCAA
GGAGTTGATGGCGGCGGTCGCACATTATGAGAACGTTGTCTGGGACTCAC
TTCTGGATTACCGCTGCCTGATGTTGAACGACTACTTGTACACGAAATAT
TCAGGTAGTCTAGAACGCCGGACTAAACCGCCCCCCCTTCCGATGTCGTT
GCCTGCTTGTTGGGTGTCACGCGTCACGGGTGGTAGCCAGTGATATGCCA
TAAGTCTGCGGTGCAACGCCAACAATGTGATGTATCTTGCGCGGCGTTTC
AGTCGAAGAATCATTCTCACCCGTTTCACCGACCAACCCCTTTATCGCGC
CTGCAATACCAGGAAATCGAGGCAGCGCTTCACTCTGATGGTGTATACTG
CCGTCGTCCATACCGTTGCTCGAACCGGCCACCCATGAGCGCCAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1119:9917..10711+

>mRNA_P-littoralis_Contig1119.7.2 ID=mRNA_P-littoralis_Contig1119.7.2|Name=mRNA_P-littoralis_Contig1119.7.2|organism=Pylaiella littoralis U1_48|type=CDS|length=162bp|location=Sequence derived from alignment at P-littoralis_Contig1119:9917..10711+ (Pylaiella littoralis U1_48)
GCAAAGCAAGACCGATCTCACGCCAACAGACCACAACGATTACTTGGCTC
CAGCCCGGGTTGCAGTAACCCACGGTGGGTGGAAATCGAGGCAGCGCTTC
ACTCTGATGGTGTATACTGCCGTCGTCCATACCGTTGCTCGAACCGGCCA
CCCATGAGCGCC
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