mRNA_P-littoralis_Contig1117.64.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1117.64.1
Unique NamemRNA_P-littoralis_Contig1117.64.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1117.64.1 vs. uniprot
Match: D7G697_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G697_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 1.740e-18
Identity = 56/142 (39.44%), Postives = 77/142 (54.23%), Query Frame = 2 
Query:    5 PRRVLSVDMVDASVMRNVASPLRLQALQSQTEGVGGGEIRFLPVMPKMCVLVVGTGVKPAVAALAKARDALSTRVQRWQEKHLSVRLLANGVFSELERH------PKESRLFEAPFDGGLSRALSRFGADLWLDGFFLRGAV 412
            PR V  VDM+DA+VMRNVA+P  L+A      GV G +I  +PV     +LVV  G +PA   + +   A+    +RW + H+SV L       +L ++       K+S+    P    LSRA+S+ G DLWLD F LRG V
Sbjct:  538 PRSVQLVDMIDAAVMRNVATPANLEAFARAGGGVAG-DIEVIPVRESWRLLVVAPGEEPAEGTVDRVCKAIGQAARRWADAHVSVPLNPQMYVKQLHKNRWQRGVEKDSK---PPIIADLSRAVSKHGVDLWLDAFCLRGHV 675
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1117.64.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G697_ECTSI1.740e-1839.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1117contigP-littoralis_Contig1117:61585..62530 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size434
Hectar predicted targeting categoryother localisation
Exons3
Cds size405
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789446.3763018-CDS-P-littoralis_Contig1117:61584..618121680789446.3763018-CDS-P-littoralis_Contig1117:61584..61812Pylaiella littoralis U1_48CDSP-littoralis_Contig1117 61585..61812 -
1680789446.3864787-CDS-P-littoralis_Contig1117:62063..622401680789446.3864787-CDS-P-littoralis_Contig1117:62063..62240Pylaiella littoralis U1_48CDSP-littoralis_Contig1117 62064..62240 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789446.3946912-UTR-P-littoralis_Contig1117:62240..622461680789446.3946912-UTR-P-littoralis_Contig1117:62240..62246Pylaiella littoralis U1_48UTRP-littoralis_Contig1117 62241..62246 -
1680789446.4061637-UTR-P-littoralis_Contig1117:62508..625301680789446.4061637-UTR-P-littoralis_Contig1117:62508..62530Pylaiella littoralis U1_48UTRP-littoralis_Contig1117 62509..62530 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1117.64.1prot_P-littoralis_Contig1117.64.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1117 61585..62240 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1117.64.1

>prot_P-littoralis_Contig1117.64.1 ID=prot_P-littoralis_Contig1117.64.1|Name=mRNA_P-littoralis_Contig1117.64.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=135bp
MVDASVMRNVASPLRLQALQSQTEGVGGGEIRFLPVMPKMCVLVVGTGVK
PAVAALAKARDALSTRVQRWQEKHLSVRLLANGVFSELERHPKESRLFEA
PFDGGLSRALSRFGADLWLDGFFLRGAVTGTDARE
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mRNA from alignment at P-littoralis_Contig1117:61585..62530-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1117.64.1 ID=mRNA_P-littoralis_Contig1117.64.1|Name=mRNA_P-littoralis_Contig1117.64.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=946bp|location=Sequence derived from alignment at P-littoralis_Contig1117:61585..62530- (Pylaiella littoralis U1_48)
TTTTCCGCGGAGAGTTCTGTCGGTAAGGACTGTTGCTCAATATTCACAAG
GCCACATGATGGCCATTGGAACTACGTAGCTCTCACGTCTTGATTTGTTT
TTCGAGTTGAGTTGGAGAAGGGGGAGAAAGAGGGTCGTTCTGGCGTCAAT
AGGACAGTACCGAACTTGCTGTTCTACTCCTCGTCACCCTCCTCCCTCCT
TCTGTAACGCTTGCTGATCAAAACCTTGGCGGTGTGCGCGTCTCTGCTGC
TGCCAACTGGTGCCGATCACGGCTGTCATAAAAGGTTGACATGGTCGACG
CAAGCGTGATGCGGAATGTCGCGAGTCCTCTCCGACTGCAGGCCCTCCAA
AGTCAAACGGAGGGAGTGGGGGGTGGAGAGATTCGGTTCCTGCCAGTGAT
GCCGAAGATGTGTGTGTTGGTGGTTGGGACAGGAGTGAAGCCTGCGGTGG
CGGCCTTGGCCAAGGCGGTGAGTCGGCGGTGGTTCGTTCTGCTTCTTAAA
CATTTGTCCTCCTTCGTGCAGCACGCACGCGGTACATCACGTTTTTGATC
ACCGGTGTTCACAATTCCTCACGTGAAAAAGTCGAGCGTTGCGAAAATTC
GCAGCGTTACATCATGGAATGACAGAAAAAAAACTGTTCCTACAGCAGTA
CGACCCCCCCCCCCCTCCCTCCTGACGCTCGCCACCCTCAAACCCTCCCG
ATCGACTGTGCTTGAAAGCGCGACGCCTTGAGCACGCGAGTGCAACGGTG
GCAAGAGAAGCACTTGAGCGTGCGTTTGCTCGCGAACGGTGTCTTCAGCG
AGCTGGAGAGGCATCCCAAGGAGTCAAGGCTCTTCGAGGCACCATTCGAC
GGGGGCCTCTCGAGGGCCCTCTCGCGATTCGGTGCCGACCTGTGGCTGGA
CGGCTTTTTCCTGAGGGGAGCAGTCACGGGCACCGATGCCAGGGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1117:61585..62530-

>mRNA_P-littoralis_Contig1117.64.1 ID=mRNA_P-littoralis_Contig1117.64.1|Name=mRNA_P-littoralis_Contig1117.64.1|organism=Pylaiella littoralis U1_48|type=CDS|length=405bp|location=Sequence derived from alignment at P-littoralis_Contig1117:61585..62530- (Pylaiella littoralis U1_48)
ATGGTCGACGCAAGCGTGATGCGGAATGTCGCGAGTCCTCTCCGACTGCA
GGCCCTCCAAAGTCAAACGGAGGGAGTGGGGGGTGGAGAGATTCGGTTCC
TGCCAGTGATGCCGAAGATGTGTGTGTTGGTGGTTGGGACAGGAGTGAAG
CCTGCGGTGGCGGCCTTGGCCAAGGCGCGCGACGCCTTGAGCACGCGAGT
GCAACGGTGGCAAGAGAAGCACTTGAGCGTGCGTTTGCTCGCGAACGGTG
TCTTCAGCGAGCTGGAGAGGCATCCCAAGGAGTCAAGGCTCTTCGAGGCA
CCATTCGACGGGGGCCTCTCGAGGGCCCTCTCGCGATTCGGTGCCGACCT
GTGGCTGGACGGCTTTTTCCTGAGGGGAGCAGTCACGGGCACCGATGCCA
GGGAG
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