mRNA_P-littoralis_Contig1117.30.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1117.30.1
Unique NamemRNA_P-littoralis_Contig1117.30.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1117.30.1 vs. uniprot
Match: D7G696_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G696_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 6.500e-6
Identity = 57/172 (33.14%), Postives = 80/172 (46.51%), Query Frame = 3 
Query:   27 MEHGLRVCREG-WKPSDFSLAHMRLATAADGLGSPLLLPSAGRTSVLKTRKLREVSADFGIFAAQVSAVQMDRYTGDSSAAARGSPTHTAPPRVHSACAAVIQLWGLAHSVELAATQTVAIA---GNMGKLPLLLSPSIVGALSKERELSRGIFKFADARANAKVTLDTEKG 530
            +EHG+RVCREG W+P+ FSL  +R+ T     G+  L+ SAG       ++LRE+SA +GI AA V A                     A  RV      V QLWGL  +V+ A  + V       +  K+ L L     G  + E+  S G  +  + R  AKV L  ++G
Sbjct:   53 LEHGIRVCREGPWQPASFSLMQVRIPTRPAESGTSRLVLSAGVPHP-SDKRLRELSAVYGIVAANVKA---------------------ASDRVK-----VAQLWGLHDNVQAALDRLVVGPDKNADQEKISLRL-----GQRNLEQLASTGWIRTLERR-RAKVELYQQRG 191
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1117.30.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G696_ECTSI6.500e-633.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1117contigP-littoralis_Contig1117:31684..33621 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size531
Hectar predicted targeting categoryother localisation
Exons3
Cds size519
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789446.3135438-CDS-P-littoralis_Contig1117:31683..317071680789446.3135438-CDS-P-littoralis_Contig1117:31683..31707Pylaiella littoralis U1_48CDSP-littoralis_Contig1117 31684..31707 -
1680789446.3247814-CDS-P-littoralis_Contig1117:32137..325781680789446.3247814-CDS-P-littoralis_Contig1117:32137..32578Pylaiella littoralis U1_48CDSP-littoralis_Contig1117 32138..32578 -
1680789446.3333702-CDS-P-littoralis_Contig1117:33556..336101680789446.3333702-CDS-P-littoralis_Contig1117:33556..33610Pylaiella littoralis U1_48CDSP-littoralis_Contig1117 33557..33610 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789446.342096-UTR-P-littoralis_Contig1117:33610..336211680789446.342096-UTR-P-littoralis_Contig1117:33610..33621Pylaiella littoralis U1_48UTRP-littoralis_Contig1117 33611..33621 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1117.30.1prot_P-littoralis_Contig1117.30.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1117 31684..33610 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1117.30.1

>prot_P-littoralis_Contig1117.30.1 ID=prot_P-littoralis_Contig1117.30.1|Name=mRNA_P-littoralis_Contig1117.30.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=173bp
MLAGCMEHGLRVCREGWKPSDFSLAHMRLATAADGLGSPLLLPSAGRTSV
LKTRKLREVSADFGIFAAQVSAVQMDRYTGDSSAAARGSPTHTAPPRVHS
ACAAVIQLWGLAHSVELAATQTVAIAGNMGKLPLLLSPSIVGALSKEREL
SRGIFKFADARANAKVTLDTEKG
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mRNA from alignment at P-littoralis_Contig1117:31684..33621-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1117.30.1 ID=mRNA_P-littoralis_Contig1117.30.1|Name=mRNA_P-littoralis_Contig1117.30.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1938bp|location=Sequence derived from alignment at P-littoralis_Contig1117:31684..33621- (Pylaiella littoralis U1_48)
ATCTCTCGGAGATGCTGGCAGGATGCATGGAGCATGGTCTCCGTGTCTGC
CGAGAGGGCTGGAAGGTAGAGTCTGTCCGTTGAAATGTTAAATGTTGCCA
CCATATACCAGAATCACTTGGGAATTTATTCACCCTAGTGGCACAATAAA
AATCTTATTGGTAAGTCAAGACAGCTCTGTTTCGGGCGCTTCTTTAGATC
GGGGCGTTGTTTTTCGTTGTCGAGATTTGGGGAGATTTGTACAGCAGTTT
TGCTTGGTTTAGTGCGGGGTTCAACTTTATTATCTGGGCCGGATTTGAAC
GTATCACGCCGAGGAGCTCACGGCGACCCAACCGGCTTTTTTGTTTTGCG
TGAATGCCGTACAGAAACGGGCCAACAGCTGGAGTATTCCAGGCGACCTC
AGCGCACAGCCAGTTACTTGAGAACGTTTGCACCGATACATTTAATAAAA
AAATCAACGGATTCGGACGAAGTGGGCCGGCACCCAGCAAGACCGTTTTA
TTTTATTTTTTTCCCAATCTTGTTTTTGAGCGAGAAATGGCCTCTGAACA
GCTCCAAACGTTTGGCAGGCGCACACACCATATTATTTGTTGCAGAGATT
ATACCGGGGCGAGGGGTAGGCGTGCGTGCTTTTTGTTTCAGCCGGTATAG
ATACCGCTTCGGGATACTTGTTTTGTTGATTTGGGCCAATCATGTGTTGC
TTTGGGTTAATACCGACAAAAAAAAATGATTTCGAAACAACAGCGTTTTT
CACCGATTCGTATCTTTCTGACGCCGAATCTGGGTTCCTCTCGGGTGTGC
GGGTTCAGTTGCATGTGTCAACTTTTAAAATTTTGCGAGAAAAGTCGGCG
TCGGGTGGCCGCAACATCCAGAGTCTACGGCGGGGTGCCACCCCGCTTAC
GAGTGCCATGAGAAGCAGAAACACCGAATCAAGCAGCAAGACCAAACGTG
TTCGCTGACCCCCTCCGCTCCCCCGCTCCCGCGTCGCCCTCTTTCCACCC
GCCCATCGCGCCCATTTTTTTCTTGCCATGATCAAACAAGCAGCCTTCAG
ACTTTTCGCTGGCCCACATGAGGTTGGCAACCGCGGCCGATGGTCTTGGG
TCACCCCTTCTGCTGCCGAGTGCGGGGAGGACGAGCGTCCTAAAGACCCG
CAAGCTGCGCGAGGTGTCGGCCGACTTCGGCATCTTCGCCGCACAGGTGT
CCGCGGTACAGATGGACAGGTACACCGGTGACAGTAGCGCAGCAGCGAGA
GGCTCCCCCACGCACACCGCCCCTCCGCGTGTGCACTCGGCCTGTGCTGC
AGTCATCCAGCTGTGGGGATTGGCGCACAGCGTCGAGCTGGCGGCGACTC
AGACAGTCGCCATCGCCGGTAACATGGGCAAGTTACCGCTTCTGCTCAGT
CCATCCATTGTGGGCGCTCTCTCGAAGGAGAGAGAACTCTCCAGAGGGAT
TTTCAAGTTTGCCGACGCAAGGGCGAACGCGAAGGTGATCAAGCCTACAC
TGCACCGTACGGCTGCAGCACCTGCTGTGATAGTACACATGGCTTCTCAT
CTATCCTATGATGATCCGTTGACCGAGTTGGCGGACGTTTCTGTTTCACG
TCTCGCCTTTGATCCCTTGCCGCCGGCTTGAAGCCGCGTATATGCCTACC
TCACGGCGGCGCTCTTTCTCGCCATGACCCTGACGTTCAGAAAATTTTAT
TTTTTTGGGGGTGCTGCCGGATTATTCCAATCAAATCTTGTCTGAGGCAA
AAAGGTGGACGGTCCTGAGCATAGATTTAGATCCAGTCTCCTGCAAAACT
CTGAATGATCACTACATGCTTGCAGCAGCATTTCCGAGAAGGTCGAATAT
GCAGTGATGTGGTAAGTTTCGAGCCGTTCTCGCCCTTGCCGCTCACTACC
GACATATACTGTAGGTCACGCTGGACACGGAGAAGGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1117:31684..33621-

>mRNA_P-littoralis_Contig1117.30.1 ID=mRNA_P-littoralis_Contig1117.30.1|Name=mRNA_P-littoralis_Contig1117.30.1|organism=Pylaiella littoralis U1_48|type=CDS|length=519bp|location=Sequence derived from alignment at P-littoralis_Contig1117:31684..33621- (Pylaiella littoralis U1_48)
ATGCTGGCAGGATGCATGGAGCATGGTCTCCGTGTCTGCCGAGAGGGCTG
GAAGCCTTCAGACTTTTCGCTGGCCCACATGAGGTTGGCAACCGCGGCCG
ATGGTCTTGGGTCACCCCTTCTGCTGCCGAGTGCGGGGAGGACGAGCGTC
CTAAAGACCCGCAAGCTGCGCGAGGTGTCGGCCGACTTCGGCATCTTCGC
CGCACAGGTGTCCGCGGTACAGATGGACAGGTACACCGGTGACAGTAGCG
CAGCAGCGAGAGGCTCCCCCACGCACACCGCCCCTCCGCGTGTGCACTCG
GCCTGTGCTGCAGTCATCCAGCTGTGGGGATTGGCGCACAGCGTCGAGCT
GGCGGCGACTCAGACAGTCGCCATCGCCGGTAACATGGGCAAGTTACCGC
TTCTGCTCAGTCCATCCATTGTGGGCGCTCTCTCGAAGGAGAGAGAACTC
TCCAGAGGGATTTTCAAGTTTGCCGACGCAAGGGCGAACGCGAAGGTCAC
GCTGGACACGGAGAAGGGG
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