mRNA_P-littoralis_Contig1117.10.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1117.10.1
Unique NamemRNA_P-littoralis_Contig1117.10.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1117.10.1 vs. uniprot
Match: D8LIZ2_ECTSI (Oligopeptidase A (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIZ2_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 1.530e-7
Identity = 29/38 (76.32%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:   88 QVPGCQRLKTEAQIRVVGASVKQMELGGVGLLGVRHRE 201
            QVP C+RL TEAQIRVV ASVKQMELGGVGL G    E
Sbjct:  127 QVPACRRLMTEAQIRVVDASVKQMELGGVGLEGEAKEE 164
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1117.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LIZ2_ECTSI1.530e-776.32Oligopeptidase A (Fragment) n=1 Tax=Ectocarpus sil... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1117contigP-littoralis_Contig1117:7185..8248 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LIZ2
Preferred namePRD1
PFAMsPeptidase_M3
Model size256
Max annot lvl2759|Eukaryota
KEGG koko:K01392,ko:K01405,ko:K01414,ko:K13726
KEGG Pathwayko04614,ko05143,map04614,map05143
Hectar predicted targeting categoryother localisation
GOsGO:0000322,GO:0000323,GO:0000324,GO:0003674,GO:0003824,GO:0004175,GO:0004222,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005758,GO:0005773,GO:0005794,GO:0006508,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009987,GO:0012505,GO:0016787,GO:0019538,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043603,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0070011,GO:0070013,GO:0071704,GO:0140096,GO:1901564
Exons3
Evalue1.06e-08
EggNOG OGsCOG0339@1|root,KOG2089@2759|Eukaryota
EC3.4.24.15,3.4.24.37,3.4.24.70
Descriptionmetalloendopeptidase activity
Cds size213
COG categoryE
BRITEko00000,ko00001,ko01000,ko01002
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789446.2561646-CDS-P-littoralis_Contig1117:7184..72911680789446.2561646-CDS-P-littoralis_Contig1117:7184..7291Pylaiella littoralis U1_48CDSP-littoralis_Contig1117 7185..7291 +
1680789446.2670825-CDS-P-littoralis_Contig1117:7695..77791680789446.2670825-CDS-P-littoralis_Contig1117:7695..7779Pylaiella littoralis U1_48CDSP-littoralis_Contig1117 7696..7779 +
1680789446.2757387-CDS-P-littoralis_Contig1117:8184..82061680789446.2757387-CDS-P-littoralis_Contig1117:8184..8206Pylaiella littoralis U1_48CDSP-littoralis_Contig1117 8185..8206 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789446.286641-UTR-P-littoralis_Contig1117:8206..82481680789446.286641-UTR-P-littoralis_Contig1117:8206..8248Pylaiella littoralis U1_48UTRP-littoralis_Contig1117 8207..8248 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1117.10.1prot_P-littoralis_Contig1117.10.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1117 7185..8206 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1117.10.1

>prot_P-littoralis_Contig1117.10.1 ID=prot_P-littoralis_Contig1117.10.1|Name=mRNA_P-littoralis_Contig1117.10.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=71bp
TAPALSTEGGDDAPEDGTEQGGVRRAQVPQVPGCQRLKTEAQIRVVGASV
KQMELGGVGLLGVRHREASS*
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mRNA from alignment at P-littoralis_Contig1117:7185..8248+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1117.10.1 ID=mRNA_P-littoralis_Contig1117.10.1|Name=mRNA_P-littoralis_Contig1117.10.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1064bp|location=Sequence derived from alignment at P-littoralis_Contig1117:7185..8248+ (Pylaiella littoralis U1_48)
ACTGCACCGGCACTTTCAACCGAAGGTGGTGACGATGCTCCAGAAGATGG
GACAGAGCAAGGAGGTGTACGACGCGCTCAAGTCCCTCAGGTTCCGGGTT
GCCAAAGGTACGCACCTGGATGGACTGTCTCGTGTGTTTCTTTTTTTGTT
TTCCAGTTTTGGCTCTCGGCGCAGGGGAGGTGATGAGTACGCGCGGCTAC
AAAAATATTGTGTAGAGGACTGGGTGCCTGTTTTGCTCGGCACCTGGGGG
TGCGCCCCCCGCTGTTGTCAGCCAACCTAGGCGAACAGAGGAAGGAAAGG
GGTCCTGGTCGTACATGTTACGCTAAGACGAGCAGTCAGCAGTACCAGAT
GGTTGTCAGGTGCACAAGCAAGTGGAGTGTGTTGTGTCGTGAGCGGCTCG
TATGATATGAACCGCCGACCGTCGCTCCCCACATGCATGCACACACATCC
TTTATCCTTTCCCCCCCCGCTCCCAACCTCTCTCCTCGTCCTTTGTGCTT
CGATGAAAAAGACTCAAGACTGAAGCTCAAATTCGGGTGGTGGGTGCTTC
GGTGAAGCAGATGGAGCTTGGCGGGGTCGGTCTTTTGGGGGTCAGGTGTG
TACTGCTTTGTGCTGACTTTTTGGCCGACGCCACGCTGAAATCATGGAAA
GAGGAGAACCCACTCTATCCAGCGTTTCCTGTGTTGATTCCGTTCGACAT
TTCATTTCTGCACAGATTCCTTTTAGCACAGCATCCTAAAATATGTATGT
GTCGGCAGTGACGAGCGGCCCTCGCCGCGTCTTTAGTTTTTTGTTGCTTT
GTGCTCATGCGTGTAAAAGCAACGAGGGATATCAAAACCTTGCTTGCTTC
CCCATGGTATTGGTTCTTGTTAGGCGTTGGTTATGGTTGTACTCGTATTT
CGGCCTATATTTTGGCCCAACAAAGAGTTCTTTGTCTGTCTCTGAATTTT
CATTTGTGTCCTTTTTTTTCTTCGTGTTATTTTTTTGCATTTCGTGCCAG
GCACCGCGAGGCAAGCTCGTGAATGAGCAGCTATCCGCAGACAAGCTGTG
GCCGTACATAAGGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1117:7185..8248+

>mRNA_P-littoralis_Contig1117.10.1 ID=mRNA_P-littoralis_Contig1117.10.1|Name=mRNA_P-littoralis_Contig1117.10.1|organism=Pylaiella littoralis U1_48|type=CDS|length=213bp|location=Sequence derived from alignment at P-littoralis_Contig1117:7185..8248+ (Pylaiella littoralis U1_48)
ACTGCACCGGCACTTTCAACCGAAGGTGGTGACGATGCTCCAGAAGATGG
GACAGAGCAAGGAGGTGTACGACGCGCTCAAGTCCCTCAGGTTCCGGGTT
GCCAAAGACTCAAGACTGAAGCTCAAATTCGGGTGGTGGGTGCTTCGGTG
AAGCAGATGGAGCTTGGCGGGGTCGGTCTTTTGGGGGTCAGGCACCGCGA
GGCAAGCTCGTGA
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