mRNA_P-littoralis_Contig1117.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1117.4.1
Unique NamemRNA_P-littoralis_Contig1117.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1117.4.1 vs. uniprot
Match: D8LIZ2_ECTSI (Oligopeptidase A (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIZ2_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 4.530e-8
Identity = 30/39 (76.92%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:   49 MDATDEFRAKQVAERLPADKPLRPWFLRDLEEKKAKKAE 165
            MD  DEFRAKQVAE LPAD PL P+FLRDLE  KAK+AE
Sbjct:    1 MDPPDEFRAKQVAEGLPADTPLPPFFLRDLEANKAKEAE 39
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1117.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LIZ2_ECTSI4.530e-876.92Oligopeptidase A (Fragment) n=1 Tax=Ectocarpus sil... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1117contigP-littoralis_Contig1117:4563..5677 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LIZ2
Preferred namePRD1
PFAMsPeptidase_M3
Model size165
Max annot lvl2759|Eukaryota
KEGG koko:K01392,ko:K01405,ko:K01414,ko:K13726
KEGG Pathwayko04614,ko05143,map04614,map05143
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000322,GO:0000323,GO:0000324,GO:0003674,GO:0003824,GO:0004175,GO:0004222,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005758,GO:0005773,GO:0005794,GO:0006508,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009987,GO:0012505,GO:0016787,GO:0019538,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043603,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0070011,GO:0070013,GO:0071704,GO:0140096,GO:1901564
Exons2
Evalue7.42e-09
EggNOG OGsCOG0339@1|root,KOG2089@2759|Eukaryota
EC3.4.24.15,3.4.24.37,3.4.24.70
Descriptionmetalloendopeptidase activity
Cds size165
COG categoryE
BRITEko00000,ko00001,ko01000,ko01002
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789446.203841-CDS-P-littoralis_Contig1117:4562..46431680789446.203841-CDS-P-littoralis_Contig1117:4562..4643Pylaiella littoralis U1_48CDSP-littoralis_Contig1117 4563..4643 +
1680789446.2192087-CDS-P-littoralis_Contig1117:5593..56771680789446.2192087-CDS-P-littoralis_Contig1117:5593..5677Pylaiella littoralis U1_48CDSP-littoralis_Contig1117 5594..5677 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1117.4.1prot_P-littoralis_Contig1117.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1117 4563..5677 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1117.4.1

>prot_P-littoralis_Contig1117.4.1 ID=prot_P-littoralis_Contig1117.4.1|Name=mRNA_P-littoralis_Contig1117.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=55bp
AENQAIEEGAAAAKAVMDATDEFRAKQVAERLPADKPLRPWFLRDLEEKK
AKKAE
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mRNA from alignment at P-littoralis_Contig1117:4563..5677+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1117.4.1 ID=mRNA_P-littoralis_Contig1117.4.1|Name=mRNA_P-littoralis_Contig1117.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1115bp|location=Sequence derived from alignment at P-littoralis_Contig1117:4563..5677+ (Pylaiella littoralis U1_48)
GCTGAAAATCAGGCAATCGAGGAAGGGGCCGCGGCAGCAAAGGCGGTGAT
GGATGCCACCGACGAGTTCAGGGCGAAGCAAGTGAGTTTTTTTTTTTTTG
ATGGATGGATGCATGGATGGACGGATATAGATAGATGGACGTATTTTTTT
TTTTTGCTCTCGGAGCGATCGCATGTGCCATTTACACATCAGATTATATG
CAGCTTAACCGGCAAAGTCTAACAATTGGAAAATGGATGACGGAATGGAG
GCTAGCCTTCGCGTGGTGTGTACATCATGAGGAAAGGCTGGACTTCTTTC
GTTTTTGCTTGTTTTGGTGTCGAGGATGGATACAGGCAGATACGAACAAT
GAAGCACAAGGCAAAGCAGGTCGGTAGAGGAGGAGCGAGACAGCATGTCT
GTCAGAGTTTCTCATCTTCCGCGGGTTGTCTTCGGAAACGAACGGAGCAC
GCACGTATGCTACTACGACCCTTGGCGCCCAACCCCGGTGCTGTTGTACG
TGCGCATGAGTAGATACACCGCCGTGGGCAAGTTGAAAGTCCACTTGAAC
CTGCGGGGTTTCCCCATCGTTGATAAACTTGTGCTGTCTGGGAAGGGCGA
AGCAGGCTTGTGCTCCTGCTTGGATGCGATACTCGCAGCAAGCACTGATG
CTGAAACTCTGCTCTGCACAGGTCGAACGAAGAACCGGTACACGAAGTTG
AATCTATATGATAGCATCGCAGTCGCTTCCCTTGGATCAACCGTTCCACT
TGAAAGGCACTACGTACTGCACACGTCAAACGACCTTTGTTGTTATCGTC
TTGTGACTTAGTAGCAGTTGCAACAACGCTAGCAGCGGTAGCCGCAGTAA
CAACCCCAGCACCAACACCAACAGCAGCACCAACAGCAACAGCAGCACCA
GCAACAGCAGCACCAGCACCAGCAACAACAACGACAAACATTGCGAACTG
GATTGAAATGAATTTATCGGGTATTTGATTATTTTTTCATGTATTCCAAA
TACGAAAACAAGCAAATCAACAAATTAAAAGGTGGCGGAGCGTCTGCCGG
CAGACAAGCCGCTGCGGCCGTGGTTCCTGCGAGACCTTGAGGAGAAGAAG
GCCAAGAAAGCGGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1117:4563..5677+

>mRNA_P-littoralis_Contig1117.4.1 ID=mRNA_P-littoralis_Contig1117.4.1|Name=mRNA_P-littoralis_Contig1117.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=165bp|location=Sequence derived from alignment at P-littoralis_Contig1117:4563..5677+ (Pylaiella littoralis U1_48)
GCTGAAAATCAGGCAATCGAGGAAGGGGCCGCGGCAGCAAAGGCGGTGAT
GGATGCCACCGACGAGTTCAGGGCGAAGCAAGTGGCGGAGCGTCTGCCGG
CAGACAAGCCGCTGCGGCCGTGGTTCCTGCGAGACCTTGAGGAGAAGAAG
GCCAAGAAAGCGGAG
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