mRNA_P-littoralis_Contig1.410.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1.410.1
Unique NamemRNA_P-littoralis_Contig1.410.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1.410.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1contigP-littoralis_Contig1:1770744..1776204 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size645
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-04_002425.1
Cds size645
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789324.0619152-CDS-P-littoralis_Contig1:1770743..17712951680789324.0619152-CDS-P-littoralis_Contig1:1770743..1771295Pylaiella littoralis U1_48CDSP-littoralis_Contig1 1770744..1771295 -
1680789324.0748432-CDS-P-littoralis_Contig1:1776111..17762041680789324.0748432-CDS-P-littoralis_Contig1:1776111..1776204Pylaiella littoralis U1_48CDSP-littoralis_Contig1 1776112..1776204 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1.410.1prot_P-littoralis_Contig1.410.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1 1770744..1776204 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1.410.1

>prot_P-littoralis_Contig1.410.1 ID=prot_P-littoralis_Contig1.410.1|Name=mRNA_P-littoralis_Contig1.410.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=215bp
MLTGANGERISASRRKLTQALEQDRLISSLQVSPSERDSKEGDSDTNSRH
SFDNWRGREEEEGEEGLGDRRRLDAAPPSSRKRPPGVRPFAGRSPPRDAF
QLQREHKQDGEGSMVPQAEREGKRGSSNDGDSGCKRDEYGTDDADRRRRP
SAAAEAEDETLQCPDTNATMLRTRSSDNELNYATSRKASGGHGANAETVR
ILAESFVDDVLDGLS
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mRNA from alignment at P-littoralis_Contig1:1770744..1776204-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1.410.1 ID=mRNA_P-littoralis_Contig1.410.1|Name=mRNA_P-littoralis_Contig1.410.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5461bp|location=Sequence derived from alignment at P-littoralis_Contig1:1770744..1776204- (Pylaiella littoralis U1_48)
ATGCTCACCGGGGCAAACGGTGAACGCATTTCGGCGTCACGGCGAAAGCT
AACCCAGGCATTAGAACAAGACCGTCTCATATCGTCGCTACAGGTAAAGT
TTGAGCGTCACTTTCAGTTGTGTGTGCATGTCTTTGCCCTTCTCTCTTGT
CCCAACGTGAGATGTTCGTCAGGGTTGGCCTCTGATGCTATCTTTGGCAG
AGCATCTAACTCAGGGTCAAAATTAAAAAATGAGCCTCATCGTATCATAG
AATAAACAGAGAAAGAACACATGATGGCAATTATGTACGCTGAAGTGACA
TCCACTTCCCACACCACACTACGTATCGTTTCATGTTTGAACAACCCTTA
AAGGCTTAATCTTAAAAAAGATGAGAACTTGAAATTCCTCTACTGCTGTA
CCGTAGTTGGAATGGCATTCCAAGCCTGAGGGTCGGTCTTGAGGCTGTTT
TATGCAATCGGAAACTCCATTCAAAAAACACTAGATTCCACAATTTTCAG
CCAAAATGACCGCTATAACTAATAGGGGCGTTTTAATTATGAGCTTTCAT
GTCCAAATAAGTGACACAAATTTTGTCACTTTAGATGACGTGTTTTTCGT
CCATTTTAAACAGGCGGCGCAGACCTCACCATTTTTGACACATTTTCTGG
TGTTGTTTCTCCGCCTGTTCGCGCGGGTCAATTGCTTCATTTGTTCAACG
AGACATCACTTCCACACACCTGATGATATCTCGCCCGAAAAGGGATGAGA
CTCGGTGCCGAGTTCACCCCTAGAGAGGTGGTCTCCTTGGCCGTCGGAAA
TGGCCAAGATTTGAGGTCGTTGGGTGCCGTACGCAGCGAGGAAAGAGGTA
CCAAGTACCCTGCACCCCGGTTCCACTGCTGTGTGTGTGTGTGTTGTGTG
TGTTGACATCCCTTTCATTGGACGCCACTCTACACCTTTCGGGTAGGTAG
ACGCTCCAACCGGGGTCACACAGGGGGAAGTCAACACAGGAGTTTCTTTT
TTTTTTTTCTCCACTTCCCTCTGCGGTGCTTGCCTTTTTGATTGAGCTTT
TATCGCGAGAAAGGGGACAGCAATCCCTTTCCCTCGTCGATGGTACGATC
GAATTTTGTTTACTCACGAATTGATCGCTTTCCACTTTCACGCGCAATGT
GAGAAAAAGCCCCAGATCGTGTTACTGCACTGGGATTCGAACTCACGCGT
GAATGTCAGAGGGTTGCGTGGATTACCAACTGAACCACCGGGGCTATGGA
GAGCATATTTGTTGACGTTTCGACCCATTTTTCAGAGCACCACAACAGTT
ATCTTTCCCACTCCATGCTCGCCGAACAAATGACGATGGGATTCGAACTC
ACGCGTGAATGTCAGAAGGTTGCGTGGATTACCAACTGAACCACCGGGGC
TGTGGAGAGCATATTTGTTGACGTTTCGACCCATTTTTCAGAGCAGCACA
ACAGTTATCTTTTCCACTCCATGCTCGCCGAACAAATGACGAGACTCCCT
GAAAACTGCAGGGCGGGCAATATATGCCTATCCTCTGTCAGGCTTGGCCA
AGGTTTGGGGCTGTGGGGTGTCAGGTCTCACGGGAAAAAAGGTTTCGTGA
TCACGCATCAAGCAGACTTTTCAGGCATGCCCCTGAAAAAAAGAACAAAA
AATCTACTCTCGGTCACCAAAGCTGGCTGCTGCTGCTGTAGAGAATTCAG
GGACGAAGCCGGGAGAAACATAGCTTGCTGCTGTCGGTCGTGCCACAGCC
AAACCTTAGGCTGTCTTTTGGGGTGAGCTACCACTGCTGGACCCTCTGTT
AGCAGCGTCTCGGCCTCGCTTGGGGATGTCGAAGAAAATGTCAAAGAAAA
TGTCAAAAAATGTGAGCCAAGTCGCTCACACTTTTGGGCTGCAGATCAGA
TCACACTTCTTGAAAAAAAAGTCGACAAATGCCTTCATACATGTGTTGAA
ATGGTTGACATGTCGAAATATTTGACATAAAAAGCCAATGATTAAAACGA
CCCTTACGCTGTCTCCGAAAAACACCCTTTTGACCGAACGAAATTTTCCG
AACGAAAATGACCAGCCCGCGCGGAGCAGCGGTGACATGTGGCCCGCCGC
AGCAGGCTGAAAAATATTTGGGTCTTCCCGAGCAACGGTACGGGAAAACG
TTCCAGTTGGTGTACCGCGGGATAGGAACGGTACGGGAAGGCGGGAAAGA
CGTATTAATGGGGTTGACGAGAGATGAAATGGGAAATAAATATTTCCCGG
TGGAACGGAAATCGTCGGGAAATTTAATGGTCGGGAAACATGGCGGGAAA
CGAGTCGGGAAACACGTCGGGAAACAAGTCGGCACGTCGGGAGGCACATT
AATCGTTCCGAGGCTTTCATAACAATTAAATGCGGTTTATGTTTTAGCTA
TCATTGTTCTTGTGCCCGTATGCGTGACTCAGAAATCCAAGGTCACATCA
ACGGCGGCACTTACACCAACGTCTGCATCCAGCAAGAACTGATGAAGGCA
ACAAATAAATGTCATTGCGTGTATAACTCTTATGTATTATTTTTGTGTTT
TGATGGTGTGTATACGAAGGATTAGATACTTCATTTTATGTCTTTTTTTC
ATTCTTACAAATAGATCAGTATGTTGGCCTCTCTCTAGACGAGGGTCGGG
AGTAGATTAGCCACAAACACGAAGAATAGGACACATCTACCAGTGTCTCT
ACAACTCAGATAATGTACCGCAGCTCTCCTGAGGTTATCAGGCCGAACAA
GGCAATTTGGTGGTCGTCTTGAGTGACCCGCGTTACATCTTGTGTATATA
CAGGTTATATTTGTGCTGTTAGCATCATCTTTGGCAGCAATTGTTGTGTC
TGGTTTGACAGTTCGTTGCTTGATTTTTGTGTGGCTTCAGAAAATACTCC
TTAAAATACAATAATTTTCTTGTAATACAAGTATCATACCGTATGAATTA
CTATGTACCTGCTGTGACCCAATGGTGACGAGTGTGCAACTAAAAAGAAG
ACCCAGTTGCTGAAGTCTTGTCCTGCTAACTGGAGATCATAATAGACAAG
TACAACATTTATGTTCGTATATTTCTCTGTGTTTGATAGCTTCACCAAGT
TTTTTGACGTGCAAGTTGCCTGGAGCAGTTTGGTGAATGAAGTGCCGTAC
ACCAACAGAAGAAGATGGATGTTGTGCAATGCGCATCAGACTGTGCTTGG
TGCGGGCTGTGAACCACTGTTGCGCAACCTCGAGGCCGCGCGGCCTTATC
CGACTTGGAATTTTGTGGCTTGGCTTTTGTCTATTTATTTTAAGTGGTTC
CGTCGTCAATGATCGATTTGGTATGTTCTGGCTTTTTGCAACCACAACCT
CCAATATTTCGTTTTTTCCCCGAGTTGGACATCCTTTCTCAAAACCTCAT
GTGAAACTCTTGGATTCCAATAGTCAGACCTCCCATCAGATTGGGCCTCA
CTACCGCAAGAGTACCGCCCGTCCAGGATGGTTTGGTCGGCGGGAAATTT
GTGCGCACGGCAGACAGGTGACAGACCGAGCTTGTGTCGCACTTTGCGGC
ATTTATCTGTGTGCACATGGCAAATGAGAAGCGAGTGCCAAGGCCAAAGC
CTAAGGTTTATCGAAAACCCTTCCACCACTTTTTCTAAGCTGTAGCGTCG
TGGGCTGGTTACCTTAGGGTCGGTGTGACACGCATGTTAATAGCCGCAGC
CCTACACCCGAAGTTTTTGTCCGGTATCAAACAGGTCATTGACCATTCTT
GTTCTGGTACCATCACTGACCCCTCTTCCATTGACCTGATATGCGAAATG
GATAAAACTTGTCGCCATGTGTTGCCATTTTGCGATACTCTCCATTAAAT
TTCGAGATACGCTGTTTTTTTTGTGATAGGCGCGGTTTGTCCTGGACCAG
CCACAAGCTCCCGAGCAAAACGTAAACGTTCGCATTTTTAGTAAGTGGTT
CTGGGTTCTACTGTAAGGGAGTTGGTTGCCGCCACCAGAGAAGGACGAAG
ATACAGTCGCCGTGTGCAGTGCAAGGACAACCACACCATGACACCTATAT
ACCAGGCATTACACATATACGAAGTATATATTGAACACATTTTTGTCACC
AAGCCCACGCATGTCATGTATATCTCCTTTTCCTTCTATGCTTCGTTCAG
CACAAGGATTTCTTCATTGCTCTCGCAAAGGCCCCACCCTTCTTTTGCGG
TGCATGCCTTCGCTTTTTTCGCTAGAAGGGTCCAGAAGTCATCTTCACCT
CCTTGTCGACATTAAAGTCGATTGTTGTTTCTTGGCGAAAATCGGTTTGA
ACTGCTACAGCTAGAAAGCAACTGAAAGTTTTTGTCAGAACTGAGATTCG
AGCTCACGAATGTATGCGTAGGAAAAAAATCTCAACCAAGGACCATACAT
AACGTTATGATAAGCCTCAATCAGAGCATATCTCACTTTTGGGTGAGGTG
AGGCAAGAAAACATGATTTATTGATACGTGTGTGACTCAGAATCTGCCGC
ACGTGTCAATGGGCACGACAAATTGTACTGTACCTAGTACGATGGGTTCG
AAACTGGAACCTCGAATGGCTCAAGGGCCGCTTCATCTCTCGCTCAATCA
GAACGTATAAATCACCCGTCGCAGACTAACGCTTCGTCAACAGCCCATCC
CCAGTCAACCGCGTGTGAAACATTTCCGCAGCTTTACCCCATTGGCTGAC
CACATAGATTGGGAAGTTGCTTCTGTTTTCTCTTGTTTTCGTTTGTCTCG
TGCTTGAGAAACCAGTCGTGATATGTCATATGTCGTCCGATCACGATAGC
TATAGCGATTCGAGCACCGCACCCTACTTTAAGTGTTATCTCCCCACCTG
CACCCTACAAAATATCACGTAACCACACCACTGCACGCAAATAAACTCTG
TATGAATAGGTGTCACCTTCGGAACGCGACAGCAAGGAAGGTGACAGCGA
TACCAACAGCAGGCACAGCTTTGACAACTGGCGTGGTCGTGAGGAGGAAG
AGGGAGAGGAGGGGTTGGGGGACAGACGACGTCTCGACGCTGCGCCGCCA
TCAAGCAGAAAACGGCCGCCGGGGGTTAGGCCATTTGCAGGGAGATCCCC
TCCACGCGATGCTTTTCAGCTGCAGAGAGAACACAAGCAGGATGGAGAGG
GCTCAATGGTGCCGCAAGCTGAGCGAGAGGGCAAACGAGGTAGTAGCAAC
GATGGTGACAGCGGATGCAAGCGTGATGAATACGGCACTGACGACGCAGA
CAGGAGAAGACGGCCAAGTGCAGCAGCAGAAGCGGAGGACGAAACCTTAC
AATGCCCAGATACCAATGCTACGATGTTGAGAACAAGAAGTTCCGATAAC
GAGCTTAACTATGCAACCAGCAGAAAGGCTAGTGGTGGGCATGGTGCCAA
TGCGGAGACGGTGCGGATATTGGCGGAGAGCTTTGTTGATGACGTCTTGG
ACGGTTTGTCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1:1770744..1776204-

>mRNA_P-littoralis_Contig1.410.1 ID=mRNA_P-littoralis_Contig1.410.1|Name=mRNA_P-littoralis_Contig1.410.1|organism=Pylaiella littoralis U1_48|type=CDS|length=645bp|location=Sequence derived from alignment at P-littoralis_Contig1:1770744..1776204- (Pylaiella littoralis U1_48)
ATGCTCACCGGGGCAAACGGTGAACGCATTTCGGCGTCACGGCGAAAGCT
AACCCAGGCATTAGAACAAGACCGTCTCATATCGTCGCTACAGGTGTCAC
CTTCGGAACGCGACAGCAAGGAAGGTGACAGCGATACCAACAGCAGGCAC
AGCTTTGACAACTGGCGTGGTCGTGAGGAGGAAGAGGGAGAGGAGGGGTT
GGGGGACAGACGACGTCTCGACGCTGCGCCGCCATCAAGCAGAAAACGGC
CGCCGGGGGTTAGGCCATTTGCAGGGAGATCCCCTCCACGCGATGCTTTT
CAGCTGCAGAGAGAACACAAGCAGGATGGAGAGGGCTCAATGGTGCCGCA
AGCTGAGCGAGAGGGCAAACGAGGTAGTAGCAACGATGGTGACAGCGGAT
GCAAGCGTGATGAATACGGCACTGACGACGCAGACAGGAGAAGACGGCCA
AGTGCAGCAGCAGAAGCGGAGGACGAAACCTTACAATGCCCAGATACCAA
TGCTACGATGTTGAGAACAAGAAGTTCCGATAACGAGCTTAACTATGCAA
CCAGCAGAAAGGCTAGTGGTGGGCATGGTGCCAATGCGGAGACGGTGCGG
ATATTGGCGGAGAGCTTTGTTGATGACGTCTTGGACGGTTTGTCG
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