mRNA_P-littoralis_Contig1117.55.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1117.55.1
Unique NamemRNA_P-littoralis_Contig1117.55.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1117.55.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1117contigP-littoralis_Contig1117:52218..52761 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size544
Hectar predicted targeting categoryother localisation
Exons1
Cds size300
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789446.062559-UTR-P-littoralis_Contig1117:52217..522811680789446.062559-UTR-P-littoralis_Contig1117:52217..52281Pylaiella littoralis U1_48UTRP-littoralis_Contig1117 52218..52281 -
1680789446.0877037-UTR-P-littoralis_Contig1117:52581..527611680789446.0877037-UTR-P-littoralis_Contig1117:52581..52761Pylaiella littoralis U1_48UTRP-littoralis_Contig1117 52582..52761 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789446.0784075-CDS-P-littoralis_Contig1117:52281..525811680789446.0784075-CDS-P-littoralis_Contig1117:52281..52581Pylaiella littoralis U1_48CDSP-littoralis_Contig1117 52282..52581 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1117.55.1prot_P-littoralis_Contig1117.55.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1117 52282..52581 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1117.55.1

>prot_P-littoralis_Contig1117.55.1 ID=prot_P-littoralis_Contig1117.55.1|Name=mRNA_P-littoralis_Contig1117.55.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=100bp
MSRKFHDPPAHQQIVTYICVRHRAPLYKSSRWHRTNWGRGLRLFVGVLFA
SCPTPTGQGERGWKNLLCWAPHGETGGRSDGLKECGEDTRWKGCCLKRG*
back to top

mRNA from alignment at P-littoralis_Contig1117:52218..52761-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1117.55.1 ID=mRNA_P-littoralis_Contig1117.55.1|Name=mRNA_P-littoralis_Contig1117.55.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=544bp|location=Sequence derived from alignment at P-littoralis_Contig1117:52218..52761- (Pylaiella littoralis U1_48)
TTCGTACGAGGTACGAACGAGTAGATCTCGAATCTTCTATTGTACGCAGC
ATGGAATTCTGGCGGGTGTGAACCAGAACTTGCCTCGTTTTCATCGATGA
GAAAGGGAGCTCGCACCCACTGCACAACAGCTCACCATCACCACGAGCGA
GCCTTGAGCCTCTGATATTATCCGAGACACATGTCTCGCAAGTTCCACGA
CCCTCCGGCACATCAACAAATCGTCACATACATCTGTGTGAGGCATCGAG
CGCCCTTGTACAAGTCGTCACGCTGGCACCGTACGAACTGGGGTCGTGGG
CTTCGCCTCTTCGTTGGCGTGTTGTTCGCGTCATGTCCGACTCCCACAGG
TCAAGGTGAGAGGGGATGGAAAAACTTGCTGTGTTGGGCTCCTCACGGGG
AGACAGGAGGAAGATCAGACGGACTCAAGGAGTGTGGAGAAGACACACGG
TGGAAGGGTTGCTGCCTCAAGAGAGGGTAACAGGAAAGCCAGGAGGACCA
CAGAGAGAGAGCACAGCAGTAGCGAGAGAGGCGCTGGAAGGTGA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1117:52218..52761-

>mRNA_P-littoralis_Contig1117.55.1 ID=mRNA_P-littoralis_Contig1117.55.1|Name=mRNA_P-littoralis_Contig1117.55.1|organism=Pylaiella littoralis U1_48|type=CDS|length=300bp|location=Sequence derived from alignment at P-littoralis_Contig1117:52218..52761- (Pylaiella littoralis U1_48)
ATGTCTCGCAAGTTCCACGACCCTCCGGCACATCAACAAATCGTCACATA
CATCTGTGTGAGGCATCGAGCGCCCTTGTACAAGTCGTCACGCTGGCACC
GTACGAACTGGGGTCGTGGGCTTCGCCTCTTCGTTGGCGTGTTGTTCGCG
TCATGTCCGACTCCCACAGGTCAAGGTGAGAGGGGATGGAAAAACTTGCT
GTGTTGGGCTCCTCACGGGGAGACAGGAGGAAGATCAGACGGACTCAAGG
AGTGTGGAGAAGACACACGGTGGAAGGGTTGCTGCCTCAAGAGAGGGTAA
back to top