mRNA_P-littoralis_Contig1117.37.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1117.37.1
Unique NamemRNA_P-littoralis_Contig1117.37.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1117.37.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1117contigP-littoralis_Contig1117:37724..38036 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size168
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size168
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789445.9786427-CDS-P-littoralis_Contig1117:37723..378071680789445.9786427-CDS-P-littoralis_Contig1117:37723..37807Pylaiella littoralis U1_48CDSP-littoralis_Contig1117 37724..37807 -
1680789445.9900575-CDS-P-littoralis_Contig1117:37952..380361680789445.9900575-CDS-P-littoralis_Contig1117:37952..38036Pylaiella littoralis U1_48CDSP-littoralis_Contig1117 37953..38036 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1117.37.1prot_P-littoralis_Contig1117.37.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1117 37724..38036 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1117.37.1

>prot_P-littoralis_Contig1117.37.1 ID=prot_P-littoralis_Contig1117.37.1|Name=mRNA_P-littoralis_Contig1117.37.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=56bp
MIALVRGEGPVSSPIVIYVDVNTHFRVQAICSGPRTAVGVSILAADRPGP
LAVEHV
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mRNA from alignment at P-littoralis_Contig1117:37724..38036-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1117.37.1 ID=mRNA_P-littoralis_Contig1117.37.1|Name=mRNA_P-littoralis_Contig1117.37.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=313bp|location=Sequence derived from alignment at P-littoralis_Contig1117:37724..38036- (Pylaiella littoralis U1_48)
ATGATCGCGTTGGTCAGAGGGGAGGGGCCCGTGTCAAGCCCGATCGTCAT
CTACGTAGACGTCAACACCCACTTTCGGGTACAAGTAAGCACCATACTCC
GAAGTATTATATGTCGACCATCGCAAACTGCTCCATCGTAGCCCAGCCAT
GTGCGGCTTCTCACGTGTTGTAGCAAACGGAACTTTAACCCACGTCGCTC
ACCAAGCGGATGTTTCTGCCTTTATTCAGGCGATATGTTCCGGCCCGAGA
ACTGCTGTCGGAGTATCTATACTCGCGGCGGACAGACCCGGCCCTCTCGC
GGTTGAGCATGTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1117:37724..38036-

>mRNA_P-littoralis_Contig1117.37.1 ID=mRNA_P-littoralis_Contig1117.37.1|Name=mRNA_P-littoralis_Contig1117.37.1|organism=Pylaiella littoralis U1_48|type=CDS|length=168bp|location=Sequence derived from alignment at P-littoralis_Contig1117:37724..38036- (Pylaiella littoralis U1_48)
ATGATCGCGTTGGTCAGAGGGGAGGGGCCCGTGTCAAGCCCGATCGTCAT
CTACGTAGACGTCAACACCCACTTTCGGGTACAAGCGATATGTTCCGGCC
CGAGAACTGCTGTCGGAGTATCTATACTCGCGGCGGACAGACCCGGCCCT
CTCGCGGTTGAGCATGTG
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