mRNA_P-littoralis_Contig1117.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1117.2.1
Unique NamemRNA_P-littoralis_Contig1117.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1117.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1117contigP-littoralis_Contig1117:3065..4526 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size453
Hectar predicted targeting categoryother localisation
Exons2
Cds size294
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789445.8779643-UTR-P-littoralis_Contig1117:3064..32211680789445.8779643-UTR-P-littoralis_Contig1117:3064..3221Pylaiella littoralis U1_48UTRP-littoralis_Contig1117 3065..3221 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789445.8896441-CDS-P-littoralis_Contig1117:3221..34351680789445.8896441-CDS-P-littoralis_Contig1117:3221..3435Pylaiella littoralis U1_48CDSP-littoralis_Contig1117 3222..3435 +
1680789445.8986814-CDS-P-littoralis_Contig1117:4446..45261680789445.8986814-CDS-P-littoralis_Contig1117:4446..4526Pylaiella littoralis U1_48CDSP-littoralis_Contig1117 4447..4526 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1117.2.1prot_P-littoralis_Contig1117.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1117 3222..4526 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1117.2.1

>prot_P-littoralis_Contig1117.2.1 ID=prot_P-littoralis_Contig1117.2.1|Name=mRNA_P-littoralis_Contig1117.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=98bp
MFHVCPANNMRVAPTPHENKQTPTSQGAQLRSRVRHVLETEIQIRHGAGH
ESMRGAKTMTAVMALAHGSARDKPAAPLATSSWATRPVSTLRAGADAS
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mRNA from alignment at P-littoralis_Contig1117:3065..4526+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1117.2.1 ID=mRNA_P-littoralis_Contig1117.2.1|Name=mRNA_P-littoralis_Contig1117.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1462bp|location=Sequence derived from alignment at P-littoralis_Contig1117:3065..4526+ (Pylaiella littoralis U1_48)
GCTGTACTCAAAGGCCATATGAAGATAAGGTCGGAGTGTGTATCCAGGGA
TATAGGTATGCGGCTGGCGGTAGTGTGCATACAGTAGTACCGGTATCTGC
GAGCGACTACGCGGCAACCCGCTCGCCCAGCCCAGCCGCCAGCCAAGATC
TGGTTTCATGTTTCATGTTTGTCCGGCGAACAACATGCGCGTAGCCCCTA
CCCCCCACGAAAACAAACAAACACCCACGTCGCAAGGAGCCCAGCTCCGC
TCCAGAGTACGACATGTACTGGAGACAGAGATACAAATTCGCCACGGAGC
AGGGCATGAGAGCATGAGAGGGGCGAAAACTATGACTGCAGTGATGGCTC
TGGCACATGGCTCAGCAAGAGGTGAGGGTTTGGCCGAGTAATTTTGTCGA
GATAGAGAGGATGCTGCGGTCATGAAATAGCAAACCCTTGTGTCAACATA
GCATCCCTTGGCCTTTCGACTGCTGGGTCATGCCCTCTGCTAGCTGTCAA
CGTGGTTGCCTGCTCTGTCGATAACAATCCAGCAACCGGTACGCCTTCGT
TACAATGATACCTGCGTTGTCATATCGTACGCCTCCGTGTGGTTCGTGTG
GTGCACAGCACGATATAAGATAGCAGTGTTCCCACAGCAGCATAGAGGAA
TGTACGTACTTGTATTCAGAGGCAAATGGTATGCGGTTTCCAGGTTTAAA
GGCACGAAGGCAACGAACAGCCTAGAGCAGCACCACAACTGCTGTACGCA
GCAGCCTACAGCAGTACTTCGGTATGATTACATTGGTCTGATAAATTTGT
ACATTGTTGTTGCCACATGTTAAGCCTTTCGGGCACAACTTGGGAACATA
TTATATGCGAACGGCACAATCCATAACCCTCTCGACAACGGTCCGCCAGC
ACCAACACTGCCCCCATAGCCCTCCTTATCTCTGGCACGAGGAACACGCG
ACATATTGTACCAGGTCAGCATGTGATGGTACCTGTATCACACGACACAT
CAGCAGTACTTTACACACACCGGTCGACGAGTTCTGCCACCAAACCTGTC
GACAACAGTTTGTACTTCCAAAGTGGGGAGTACGCATGTACACCAGCAGG
CACGACCCTCATTCTATACCAACTACCAGTACACGGCGGTGCACGCTACA
CCGTTGGCCCAGATCATGCAAATTGCCACAGCCAAAACATGACGCGCCCC
GCAGCTGAGGAAGAGGGAAGCCATCAAAATTCCATCACACGGCCAGCTGA
CAAGGACATGCGCACTAACCCGCCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCGGTCGCACAACATCTCCTGCCAATTT
TAAAACCATGACCTTCAAAATCTGAAAACAAGACAAACCAGCGGCCCCAC
TGGCGACCTCCTCGTGGGCGACGCGCCCTGTGAGCACATTGAGGGCCGGG
GCCGATGCATCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1117:3065..4526+

>mRNA_P-littoralis_Contig1117.2.1 ID=mRNA_P-littoralis_Contig1117.2.1|Name=mRNA_P-littoralis_Contig1117.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=294bp|location=Sequence derived from alignment at P-littoralis_Contig1117:3065..4526+ (Pylaiella littoralis U1_48)
ATGTTTCATGTTTGTCCGGCGAACAACATGCGCGTAGCCCCTACCCCCCA
CGAAAACAAACAAACACCCACGTCGCAAGGAGCCCAGCTCCGCTCCAGAG
TACGACATGTACTGGAGACAGAGATACAAATTCGCCACGGAGCAGGGCAT
GAGAGCATGAGAGGGGCGAAAACTATGACTGCAGTGATGGCTCTGGCACA
TGGCTCAGCAAGAGACAAACCAGCGGCCCCACTGGCGACCTCCTCGTGGG
CGACGCGCCCTGTGAGCACATTGAGGGCCGGGGCCGATGCATCC
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