mRNA_P-littoralis_Contig1.408.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1.408.1
Unique NamemRNA_P-littoralis_Contig1.408.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig1.408.1 vs. uniprot
Match: D7FT18_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT18_ECTSI)

HSP 1 Score: 278 bits (712), Expect = 6.850e-94
Identity = 137/170 (80.59%), Postives = 153/170 (90.00%), Query Frame = 1 
Query:    1 IGYLHCSFHMEQSRLYCAADVCRFSRDSPDSRIGMEVQFLRESLVKAETATLDKKGELMVGKRASRRQKRGMAETYTVTWKDAETQNETTLPIAKYGLGRKAPRAKVARIMQYVKRQIDHLDVKEGRWFTGIGVVCFVFGGLLLVLRVAIGSIIPQPPSRRDLTGKKLFK 510
            +GY HCS H EQSRLYCA DVCRFSRDS ++R  +E QFLRESLVKAE A LDKKGEL+ GKRASRRQKRGMA+TYTVTWKDAETQ+ETTLPIA YGLGRK PRAKVARIMQYV+RQID LDVKEGRWFTGIG+VCFVFGG+L++LRV +GSI PQPPSRRDL+ ++LFK
Sbjct:    1 MGYGHCSRHSEQSRLYCAEDVCRFSRDSTENRSRIEFQFLRESLVKAEVAHLDKKGELVRGKRASRRQKRGMAQTYTVTWKDAETQDETTLPIASYGLGRKVPRAKVARIMQYVQRQIDDLDVKEGRWFTGIGIVCFVFGGVLILLRVVVGSIFPQPPSRRDLSRRQLFK 170
[Close]
BLAST of mRNA_P-littoralis_Contig1.408.1 vs. uniprot
Match: A0A6H5L4Y3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Y3_9PHAE)

HSP 1 Score: 276 bits (707), Expect = 2.040e-92
Identity = 137/170 (80.59%), Postives = 151/170 (88.82%), Query Frame = 1 
Query:    1 IGYLHCSFHMEQSRLYCAADVCRFSRDSPDSRIGMEVQFLRESLVKAETATLDKKGELMVGKRASRRQKRGMAETYTVTWKDAETQNETTLPIAKYGLGRKAPRAKVARIMQYVKRQIDHLDVKEGRWFTGIGVVCFVFGGLLLVLRVAIGSIIPQPPSRRDLTGKKLFK 510
            IGY HCS H EQSRLYCA DVCRFSRDS ++R   E QFLRESLVKAE A LDK GEL+ GKRASRRQKRGMA+TYTVTWKDAETQ+ETTLPIA YGLGRK PRAKVARIMQYV+RQID LDVKEGRWFTGIG+VCFVFGG+L++LRV +GSI PQPPSRRDL+ ++LFK
Sbjct:   49 IGYGHCSRHSEQSRLYCAEDVCRFSRDSMENRSRKEFQFLRESLVKAEVAHLDKNGELVRGKRASRRQKRGMAQTYTVTWKDAETQDETTLPIASYGLGRKVPRAKVARIMQYVQRQIDDLDVKEGRWFTGIGIVCFVFGGVLILLRVVVGSIFPQPPSRRDLSRRQLFK 218
[Close]
BLAST of mRNA_P-littoralis_Contig1.408.1 vs. uniprot
Match: A0A835YLB3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLB3_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 2.190e-22
Identity = 55/152 (36.18%), Postives = 93/152 (61.18%), Query Frame = 1 
Query:    4 GYLHCSFHMEQSRLYCAADVCRFSRDSPDSRIGMEVQFLRESLVKAETATLDKKGELMVGKRASRRQKRGMAETYTVTWKDAETQNETTLPIAKYGLGRKAPRAKVARIMQYVKRQIDHLDVKEGRWFTGIGVVCFVFGGLLLVLRVAIGSI 459
            G+L C  + E SR+ C +  C  +     + I  E  F R +L+ AE   L + GE++     SR+++R  A +Y + W DA+ Q     P++  GLGR+ PR++V  IM+Y+KR+I  +DV + R+ +G+G++C +FG LLL++R A+G++
Sbjct:   28 GFLKCRSNSESSRIACDSTDCVVTMVRGGAVIE-ETAFPRVNLMSAELVRLYQ-GEIVDPTSLSRQKRRTTASSYAIKWLDAQRQTHMR-PMSSRGLGRQVPRSRVQEIMKYIKREIHEVDVSQARYTSGVGLICCIFGVLLLLMRAAVGNL 176
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1.408.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FT18_ECTSI6.850e-9480.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L4Y3_9PHAE2.040e-9280.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YLB3_9STRA2.190e-2236.18Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1contigP-littoralis_Contig1:1763422..1769645 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size513
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-04_002430.1
Cds size486
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789323.993383-UTR-P-littoralis_Contig1:1763421..17634481680789323.993383-UTR-P-littoralis_Contig1:1763421..1763448Pylaiella littoralis U1_48UTRP-littoralis_Contig1 1763422..1763448 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789324.006587-CDS-P-littoralis_Contig1:1763448..17635191680789324.006587-CDS-P-littoralis_Contig1:1763448..1763519Pylaiella littoralis U1_48CDSP-littoralis_Contig1 1763449..1763519 +
1680789324.0206304-CDS-P-littoralis_Contig1:1767268..17674731680789324.0206304-CDS-P-littoralis_Contig1:1767268..1767473Pylaiella littoralis U1_48CDSP-littoralis_Contig1 1767269..1767473 +
1680789324.0305612-CDS-P-littoralis_Contig1:1769435..17696451680789324.0305612-CDS-P-littoralis_Contig1:1769435..1769645Pylaiella littoralis U1_48CDSP-littoralis_Contig1 1769436..1769645 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1.408.1prot_P-littoralis_Contig1.408.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1 1763449..1769645 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1.408.1

>prot_P-littoralis_Contig1.408.1 ID=prot_P-littoralis_Contig1.408.1|Name=mRNA_P-littoralis_Contig1.408.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=162bp
MEQSRLYCAADVCRFSRDSPDSRIGMEVQFLRESLVKAETATLDKKGELM
VGKRASRRQKRGMAETYTVTWKDAETQNETTLPIAKYGLGRKAPRAKVAR
IMQYVKRQIDHLDVKEGRWFTGIGVVCFVFGGLLLVLRVAIGSIIPQPPS
RRDLTGKKLFK*
back to top

mRNA from alignment at P-littoralis_Contig1:1763422..1769645+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1.408.1 ID=mRNA_P-littoralis_Contig1.408.1|Name=mRNA_P-littoralis_Contig1.408.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=6224bp|location=Sequence derived from alignment at P-littoralis_Contig1:1763422..1769645+ (Pylaiella littoralis U1_48)
ATTGGGTACCTCCATTGCTCCTTCCACATGGAGCAATCGCGCTTGTACTG
CGCGGCAGACGTATGCCGGTTTTCCAGGGATTCGCCGGACAGTCGAATGT
GAGACAATCCCTTCTTTCGTGGGTTAGAGAACGAAATTGAGCCGTTTTGG
CGGCTGTGGTAAATACTGATGTATGCTAATATTTCCCCTACTGCTGTCTC
TCCTGTACGTACCCTGTACCCTTTGACGCTTGACCGATGATACGTACTTC
TTATGTACCAGTATTCAACACCGTAGAACTCGCTGTCAAACTAGAAAACC
GTTCTTGTTGGACATGTCTGCTGTTGTACGGATATGGCGACATGCATATT
CATAAATTATATATACATCCGCAATAGTATTGTCACCAGCCACCAGCCTC
TCGATTTTTTTTTTTATTTTGGGAGCAAACTGACTCTATTTTTCAGATTT
AAACGAGCGGAATCAGGCTGATTCTAATCACATAATCAAATCCCAGCTTC
GAATCCAAATCTGACACAAAGAATGGAAGATCCAGCCCAGATCTGGTTTT
TGTTTGCCCAACCTGTGCCCAAGTGTCTTATCCGGAAACTGCGGAAATCG
GAATCAAATCCCAACAACCAGCACTCAGGGTGGCTCTTGTCAAATTTTTG
ACCGTATTCAAAATCAAGAACAAAATTGGGTTTTGATTTTGATTCCGTGT
TGGGTCGGATCTGCTGCAGCTTGCGTTCGTCCAAAATCAAAAGCGGATAA
AATAAAAAAACAGGGGTCGCAGACAGGTGGTGTGTGATATGAGCATGCCA
TGTCTCGATTCCAAGACAAATGCGGGAGCTGTCGTCCCTCAAACGAAGAG
CACGATGGTGCCCCACGTCGCCCTGACTCAGGCGCGTTGGTAGTTCTTTG
TTTGGGATCGATAACCGAAAAACTCGGCAAGAGATGAGTAAGTACGTGTT
GCACATCTGCCCTTTCTTGGAGGTAGCGGCTGTGTCAGCTACGCAAAACA
GCAGTTGAGCAACAAACTTCCTGCACACTTCAACACACTTGAGTGCTGCT
CTCCGGATTCTGGTCGGAATTCGCTCAAACAAAGTGATCTGTATTCTGCG
TGATACCAGCTTTCTCCGGAGCTAGCACATGTGTACAGCCGGGGTCCACA
CGTTGTGCTGCGGTCAGCCTAAGCAAACACATGAAGTGTGCACCATGTGC
TCCCGGAATGCACAGCAAACACCTCTCTGTCTCGTATTCTAGGTCTATTC
GTTTTTGAGCCGCGTTTTTGATCTATTGGCGGGAAGGAAAGTGTTTTTTA
CTTTCCTTCCCGTTTCGGAAGAATAAAACTGAAATCCAAAACGTGGTGCG
GGCGGATGAATTGTTGACCTATCAGTGACATACTCCGAGTTTGATTTTTG
CTCTTTGATTTTTGAATAGGCCCAAAACGTTTTGACAAGAGCCACCCCCA
GCCGTCAGCTCAACCTCATCGAACAGCCTTCGTGTTGACATCCCGCATTC
CGCGTTGTTGCTGGTCCTGCTGCTGTTGTTGCAGGAGCGGCGGGCGCGGG
GAGTGTGCGTAATAATGATGTTGCGGAGGGTGGGATGTCAACACGAAGGC
TGGCAATGTCTTGCTCCGACATTATTGTAAAGCGTAGTCTCCTTGTTGTT
GTTGTTGTTGTTGTTGTTGATTCCCACATTAGCTCACTACCGCCGCAGTC
GAGCCCGTGGTCACAAACCAGGCACACATCGTGCTAGGAGGAAAAAAATA
AAAATAAAATATATGGACTATGATCACCCACAGTCAAATCAGATATGGTA
CCGTTGGGCTACCATCTGTGGTGGCCAGAGTACCAAACAAAATACAGAAA
AATATAACAGGCTCGAAAGAAAAACAAAAATTGGAAACAGTCCGACAAAC
AAAAAGTAACCAAGACAAACCTCAACCATAACCATATACTTCGAAGTACT
TCGTACATCGAACCAGGGCCCAGGGCCATGACAGACCAAGGCAAAGGCAA
ACCAGGGCGATGGTCCAGTAACTACATGATCAACAGACGAAAGACAAAAA
AATAAAATAAAAAAGCAGAAGATACAGGGAGGGCACAAAGACTGAGGGAG
TGCATTCGTACACAAACACAACAAACAGGCCGCCGAACAAAGAGGAAGCA
GGGGAATGAAAAGGGAAAAGAAGACCGGAAGTACCGGAAGTCGGGGGGGG
GGGAGGTGATAAAAATAAAATAAAAGGCATGCGATCAATCGCAAACATGT
CTTGCCACGAGGTCTGCCTGTTCACGCTTGCTGTCCTCAGTCGCACTCAT
GCCTCCTGCTACTGGCACCACCGTACCCAGTTGTTTCTGCCCCACATCTT
TGGCAGCAGCTACACCACCATTCCGCCCTACAGGTTTTCCACTCCGGCCA
CCTCGTAGCTTGGCATTGGACTGCTTCTTCTTGTGCTGTGCAACTCCAAC
CCCACTACCCCGCTGCCCTTGTGCCCCCCCGTACTCCTCCTCTCGTTTAT
CCCCGCCATCCGTTCTCCCTCTTTTGGTCAAGGCCTGCCCCTCAGCCGCG
TCCCTCTCCCTTTTCCGTCGACGTGTCTCTGATAGGTCTCCCTCTTTCTT
GAGCCACTCGTCCGTGAACCGCCGCGCACCCTCGTCGATCCTGTCGTACC
ACTCGTCAGCTCTCTTGGCACTTGCCTCCCACCCCTCTTTTTTGTCGACC
ACGATGTCGAACGCTTCGAGGTCCTCCTGCATTCGCCTCAGCCAGTCAAA
CTCTTGCCCCCCCAGATACCTCGCTCCCCCCTGCAATTCTCCCAAAAGAG
CAATATTCGGGAGTCTCTCGTCTCTCATGTGTGTGGTGGTGTCGAGCCCT
GCTGTTGTGTGTTTTTCTGTTCTTCATTCACAGTCCCGCGCATGACGTAC
CTGAGCCCGTTTCGCGTGTTCGTCTGCTTCTTGAGCGCTCGAGAAGACCA
GGTACGTACAAAACGTGTTCCGTTTCGCCAACTTGGGATTTGATCAAAGG
CAAAAACATTTAATTGAATCCCAAGTTGGGTATCGGAACACTTAAAAAAA
GACGAGAAGATCCGAGGTCTGCTGCGAGGCGGGAGGTCATTTCAGCCTAT
CACAGCATGTGTTCTTTGAATCTTTCATGATTTTTTCCAGATTTGGATTC
GAAACTGGGATTTGATTTTGTGATAAGAATCAGCCTCGTGTCATATCATA
TCATTCTCGTACAACAATGCATTTCACTTCGTTTCGACCATTTCGGCTGA
GCAGTGGTTCACACGTCGTCCTATCATACAGCAGTAAGGATGCAGGTTCG
ATTCTTTCTGAGAGTGTTTTCTTGCAACTTTACAGCTGTGGAAAGCGATT
CACTCGAGTGAGTAAACAGAGGGAAGGGGTTGCTAAACCCGACTCGCGTT
AAAAACCAAAGGCAAATACCGCAGGAGGAAAGGTGCGGGCAATAAACAAA
ATAAAAAATGAAAAAGCTCGTGTGTGACCTTCCTCCTGTGTGACCCCGGC
TGAAGCACCCACATCATACCGAAAGGTGTAGACTGATGCCCAGAATAAAT
GGGATGACACACACTCAGTGCCGACTTCCTCACGAGACTCCTTGCGCGCC
CTGGGCACTAGACGACAGCATACATATATACGCGCGGCGGATGCACGCGT
TTCTCTACTAATTTTATGTTCATATCCGTGTCGCGCCACAGCTCGGGGCG
TAAATGCGCCGATAGAGAGCCGTTCATCATACTTTTACTATTTTCGTTCG
AGTTCCCCAATTCCACATTCCACATCATATAAATCGCGTCCACTCGTCAA
ACCGCCGCTTTGAATCGACCCGCACGCCACTTCTCAACCCACAACAGCGG
CATGGAGGTGCAATTTCTCCGAGAGAGCTTGGTGAAGGCAGAAACGGCGA
CATTGGATAAGAAGGGCGAGCTCATGGTGGGGAAGCGTGCGAGTCGGCGG
CAAAAGAGGGGGATGGCCGAGACGTACACGGTCACCTGGAAGGACGCGGA
AACCCAGAACGAAACGACGCTCCCTATTGCCAAATACGGCCTCGGTCGGA
AGGTGCGGGAAGTCGAGCCGTTTTCCTGCGCTCTTTGTAGATAAAAAACA
GCCGTATGTGTGATAACAGGCTTGTATTGTTGAGCTAGGGAGTGTGTCGA
GCAGGTGGTTTCAGTCACAACTTGCGTAAAGAAACAACCCAGCAGTTCTG
CTGTTCACTCAGCGCTGAGTGGTGCCAGTAAAGCAGTATCTAGCCGTTTA
ATCTGTCCAACACGCACCATCCGATAAAAAAATGAAGGAGAACGGTGCAT
CGGCTAAGAAACGGCATTTAATAGCGGGTGGAAAGTTTGAGTTGCCCAAG
CTGCAATGCTGTGCTCTGTACTGGCGGGCCCGCTCCTTGTTGTACAGGCC
AGAAGTTTGACCTTGCAATACAGCAGTACCAGCAAATGGTCCGCGTGGTT
ATGAAACATTACCTTGGTGGCACGAAGGCCGGTTTGGCCTTTGAGCTTGT
CCCTTAGGCATTCATAGTTGTAGCTCGCACCGGTATGTAATAAGGCTCTA
CATTTCGATTTTTCCACGAAATGTGGCGGACGCCCCATTTGATTCATGCG
GCGGAATTTGTCCATAAACGTTACTGATTTACATGTAATTCAGAGCTGCA
GTAGCTCTGGGTCGTTGCTGATTGGCTGCCATAGTCATCGTGCTTGGCTT
TTCAGGAGACCGCTGCTGCTGTCATAATAGTAGTAAAGGCTAGCTGCTGT
CACTCAATCAAATCGAACCTTGGCAAAGCCGCCTGATGTCGCAACAGGCG
CCAAAATGTGTTGTTGGCTGCATCGCGAAGTGGCCCAGGGAGCTAAACAA
ACGAAATTCGAAGACCACTGCTGCTGCTGCTGGAAAGTAATACACTTCTG
TAGTTTTTGCTGCAGACAATCAATATGATGGGTGTCGGATCCTACCGTGT
CTAATTTGAGATCGCCCTTACGTGGCTTTCACATTGCTACTGCTGCTGCT
GCTGCTGCAAAAAAAAAAAAACGAACCCGCCAAGTTCTCGATTGGATTGA
TTGACACAGCAAACCGACATTCTGTTTTTCGAGCAGCAGCAGCAGCAGCA
GCAGCGGTCTCGTGAAAAGCCATGCAGAGGCCGGCTCCTGATGCTGTCAA
TCGATCAAAGCAAGCTGCAAAACACGTATTGGGTCGTGCCTGATTCAAAC
TGGGTCAGGTTGTGGATTCTTGCGACGGAATGATGTAATTTCCAATTTCG
AGCTGGTCGTCGTGCATTGAAAGTTCCATATTGAGATGAGCCAGGCAGGG
TGCCTGAGACAACGCGTATAACTTGAGACTGAAGGGACCAACATTTCTCG
AAACTTGCGGAACCATCTAGGACTAGTATAGCTGTGATCAATATTGCTGC
GGCTGTGTGGGTCGCTGGTCATCCCTTTGGGAGATGCTCGTTTGGGTGGC
TGTTCTCTCAAACAATGAAATTCAATATTTATCAGAGTTTTGCGGCGTAT
TCGTCGAGGACCGTTGCTTGTTGGACACATCATTGCGACTACTTTAGCTG
CCGTGGTCGTGTGTATCTAATCCCAAGCTGGGCCAGGGTGCTTGAAACAC
CACGGTGAACAGGAGAAGAGAGGCACCAAACATCCTGAAACTTGGTGAGG
TTGTCTAGTGCCACAACGGGCACCCTGCCGTCCGTTCGTGCGGCGGCGTG
GCCAAGGGCGCAAAACACTAACGGAGACAATATTTGGCGAGGGTCGACCC
CATCAACTGAAAAGCGGACAGGCACACACGTACAAACTCATATTCGGTCA
GACAGGCTTTTCCGCTACACAAGAAACATAAAAGAGTTGGACTCCGACAT
GGACGGGTCATCCTATCGCGTGCTCATGAGCCGTAAAATTAAATTGTTCT
GATCTGACTGTTGATTCCATGCTATCCAGCGACAAGATTGATTTCCCTTC
TCCCTCCCTGTCTCCGTATCTGCTCCTCTGCCTCTCTCTCTCTCTCTCTC
TTCCGTCTTCACAGGCACCCCGCGCTAAGGTTGCCCGAATTATGCAGTAC
GTGAAGCGGCAGATCGACCATCTCGACGTTAAGGAGGGTCGCTGGTTCAC
GGGTATCGGCGTCGTGTGTTTCGTGTTCGGCGGTCTGTTGCTCGTTCTAA
GGGTGGCTATCGGGTCGATCATTCCGCAGCCTCCGTCGAGGCGGGACCTG
ACTGGCAAGAAGTTGTTCAAGTAG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1:1763422..1769645+

>mRNA_P-littoralis_Contig1.408.1 ID=mRNA_P-littoralis_Contig1.408.1|Name=mRNA_P-littoralis_Contig1.408.1|organism=Pylaiella littoralis U1_48|type=CDS|length=486bp|location=Sequence derived from alignment at P-littoralis_Contig1:1763422..1769645+ (Pylaiella littoralis U1_48)
ATGGAGCAATCGCGCTTGTACTGCGCGGCAGACGTATGCCGGTTTTCCAG
GGATTCGCCGGACAGTCGAATCGGCATGGAGGTGCAATTTCTCCGAGAGA
GCTTGGTGAAGGCAGAAACGGCGACATTGGATAAGAAGGGCGAGCTCATG
GTGGGGAAGCGTGCGAGTCGGCGGCAAAAGAGGGGGATGGCCGAGACGTA
CACGGTCACCTGGAAGGACGCGGAAACCCAGAACGAAACGACGCTCCCTA
TTGCCAAATACGGCCTCGGTCGGAAGGCACCCCGCGCTAAGGTTGCCCGA
ATTATGCAGTACGTGAAGCGGCAGATCGACCATCTCGACGTTAAGGAGGG
TCGCTGGTTCACGGGTATCGGCGTCGTGTGTTTCGTGTTCGGCGGTCTGT
TGCTCGTTCTAAGGGTGGCTATCGGGTCGATCATTCCGCAGCCTCCGTCG
AGGCGGGACCTGACTGGCAAGAAGTTGTTCAAGTAG
back to top