mRNA_P-littoralis_Contig111.71.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig111.71.1
Unique NamemRNA_P-littoralis_Contig111.71.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig111.71.1 vs. uniprot
Match: D7FJV3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJV3_ECTSI)

HSP 1 Score: 176 bits (446), Expect = 1.310e-50
Identity = 128/268 (47.76%), Postives = 141/268 (52.61%), Query Frame = 1 
Query:    1 MSVAGAVTNAGSDGKTLLHCAAMSGQTNVIAELLAAGANPYARCSSGETPLDLAGRLLDQNTNLPVVP--------------PPPPASFGAPFLEKRGGGVSPTFINTPKQPQGGNARGIFV--------GSPVHSPGWPSPRGGVGGFTPRWSPGEPMKCSSAAGGAFATMPPTPPQISSRTVGGCAGLRPQSSATVEVAGVAWLG-SETTA--STDPPDAAAVAVAGGDTAFGANLAFFGQECRLNPATEGRLWAERVRAGDSSPL 729
            MSVAGAVTNAGSDGKTLLHCAAMSGQT+VIAELLAAGANP+ARCSSGETPLDLAGR LD N NLP  P              P P             G  S  +   P      N + I            PVHSPGWPSPRG  GGF    SP  P      A                        LR  S    + AGVAWLG ++TTA  +T    A   AVAGG     AN AF+GQE   +PAT+GRLWAER+ AG + PL
Sbjct:    1 MSVAGAVTNAGSDGKTLLHCAAMSGQTSVIAELLAAGANPHARCSSGETPLDLAGRWLDHNANLPAAPGQSSGSSEIVFEDSPAPIVGGXXXXXXXXXGDPSLVYQGAPTDHPAWNEQAIAAIYHKNNTPAGPVHSPGWPSPRGAGGGFMQVPSPATPTNVH--AXXXXXXXXXXXXXXXXXXXXXAPPLR--SHVKEDAAGVAWLGVAQTTAGGTTVEGQAGGEAVAGGAATAVANSAFYGQENSPSPATKGRLWAERIEAGRNQPL 264
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig111.71.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJV3_ECTSI1.310e-5047.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig111contigP-littoralis_Contig111:391617..395231 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size729
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-10_000590.1
Cds size729
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789442.7776113-CDS-P-littoralis_Contig111:391616..3916761680789442.7776113-CDS-P-littoralis_Contig111:391616..391676Pylaiella littoralis U1_48CDSP-littoralis_Contig111 391617..391676 +
1680789442.792583-CDS-P-littoralis_Contig111:392723..3928301680789442.792583-CDS-P-littoralis_Contig111:392723..392830Pylaiella littoralis U1_48CDSP-littoralis_Contig111 392724..392830 +
1680789442.8023593-CDS-P-littoralis_Contig111:394114..3945511680789442.8023593-CDS-P-littoralis_Contig111:394114..394551Pylaiella littoralis U1_48CDSP-littoralis_Contig111 394115..394551 +
1680789442.8113072-CDS-P-littoralis_Contig111:395106..3952311680789442.8113072-CDS-P-littoralis_Contig111:395106..395231Pylaiella littoralis U1_48CDSP-littoralis_Contig111 395107..395231 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig111.71.1prot_P-littoralis_Contig111.71.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig111 391617..395231 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig111.71.1

>prot_P-littoralis_Contig111.71.1 ID=prot_P-littoralis_Contig111.71.1|Name=mRNA_P-littoralis_Contig111.71.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=243bp
MSVAGAVTNAGSDGKTLLHCAAMSGQTNVIAELLAAGANPYARCSSGETP
LDLAGRLLDQNTNLPVVPPPPPASFGAPFLEKRGGGVSPTFINTPKQPQG
GNARGIFVGSPVHSPGWPSPRGGVGGFTPRWSPGEPMKCSSAAGGAFATM
PPTPPQISSRTVGGCAGLRPQSSATVEVAGVAWLGSETTASTDPPDAAAV
AVAGGDTAFGANLAFFGQECRLNPATEGRLWAERVRAGDSSPL
back to top

mRNA from alignment at P-littoralis_Contig111:391617..395231+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig111.71.1 ID=mRNA_P-littoralis_Contig111.71.1|Name=mRNA_P-littoralis_Contig111.71.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3615bp|location=Sequence derived from alignment at P-littoralis_Contig111:391617..395231+ (Pylaiella littoralis U1_48)
ATGTCGGTAGCTGGCGCTGTGACAAATGCAGGTAGCGACGGCAAGACGCT
TCTCCACTGCGTAAGTCTTCTTGGTTGAAGCCGGCAGACATGTAGTCTCT
TTCTGTCTTGTACAAAACTGACGTGCTACGCTGCTTTAACCCCACTCTTT
CGTATCGCTCGCTGATTCGGACCGGTGGGGATCGTTGAGAGGATGGTCCG
AAACAGGGGGATAAAAAAGCAGAAACAGCGGCGAAAGTTTGAATCGCATG
AGATTCCTATCGCAAGTCATCTTGACAGGATCGAGTGTGTAGGAGGGCAC
CACCCAACTGCTCGCATCTTAAGTGTGGGGCGTTCGTTTAGATAAAAATA
TGTACAGGGGGGTCAAACTTGAGTAAGGGGGAATACCGGTGCGACGGCAG
AATACACCACGATATGAAGGAAAATGTTCTCAAAGCATGCGCCAACTTAT
CCAAATGATGTGGGGGCGACCTTCATAAAGATTTCAATTCCACAAACATC
TGTCGAAGACAGGTTGCTTTTGTTCTCATTAGCGTCTGCGTTGAGAACGG
CTCACTAAGGTTGATGTGGAGGTGACCTTCATGAAAATGTATACTCTCAT
GCTCGTTCCACACTGGTGTAGTCGAAGAGGTCGTCTCACTACGGTTAGCT
GCGTCCCGGCAAAGTTTTTCAAGAAAAAATAAGGAGCGAAAAGGGGGAAA
AAGTGATGGGTGCCGAAGTGCAGACGATTCGAACCGGATCAAGTCCAACT
CTAAATTACGACGTCGTGGACAAAGAAAACCGACGTAAACAGGCGCGAAG
TATTGTGAAGAACTGGGGGATGATTCAAAGCCAGCCGGTCGGGTTTCGGT
GACCTCTCGAGGACGTGTCATGATACTCATGGACAAAAGCCGGGGGGCGT
AAGTCGAGGTGACTTTCGTAAAAGGTACACTCCCACAAATGTCTGTCGAA
GACCGATGCCTCTTTACACATGAGCGTGTTTCTCTTGCAACGTTCGACTG
AGCTAGCGCCGATCACAACGTTCAAAGCTGCGAAGAAAGGCCATCGGTAT
ACGCAGCCAAAAACTCCGTAACGCGCATAAATTGAATCACAATCCTGTCG
CTTTTAGGCCGCCATGTCAGGACAGACCAATGTCATTGCTGAGCTTCTAG
CTGCGGGAGCAAACCCCTACGCACGATGTTCATCGGGAGAAACGCCGCTC
GACCTAGCCGGAAGGTAATACACTTCAAAGACGCGCAGTACATAAGTAAA
TGTAAACAAATCTGCGCCTGGTGTGCGGTTGGCGAATAAGAAACGCGCTG
CCCCACACTTGAAATCCGGTATACTCCTCGACCTCTCTACCTAAAGATGA
GGGCCGATAAGAACGAAAATAGATAAGAAAAATGGTACTGCCAGCAGGGT
TGAAACGTTTGAGATTGGGAACGCTCGTTTGAGATTAGGAACGCTCGAGC
TCCAACTCTACCACTCACAAAATCTCGATCTCGGCCTGCCCATATTCCGC
ACAGGAACGGGCACAACGACGCACTTTCTTGCCTCCTCTGCCACCCTCCG
CTCGCGGCATCTTCGCCGACCGCCGATGATCTCCAGCAAATACCAACCGC
TAACAGTGCATCTGGCACCGCGACAAAAGGTCCTGTCACTGTTGTCACTG
GTCGAAAATCACCCAGGAAGGGGGGGCTTTTGATGTTCCGCCGAAGGTCT
TGGCTCGGCAAAAGTCCGAAAGGGGACGATCGTACGAACCCAAAGGGGGA
CGGTGGCGCAACCGCTACACTGGTCAAGAAGGGCCGGGGGAAACGCCCTG
GGGATATCCGTGGTGGTGGCGGTGGTGGAACTCCCGATGGAGGCGTCGAC
GTTGGAGGCGGATGGGTGGTGTACACCGATTCGGAAGGGTTTCAATACTG
CTGGAACGAAGCTCTCCAAGAGTTTAGGTGAGGTGGTTTGGCTTCGGAAG
AGAACTGGTGTGTGCCCTGCGTCCTTGACTTTACCCACACAGCAGTGTTG
TTTTGCCTTGCGCCGACCGGCGTGACGTGCGATGTACGCGCCCGGCAAGC
GCAATATTTGATTCCCGGTGGTATTCCTGAGGCCCATCGTTGGGTACGGA
TCGAGATGGTCCCTAAGTTTTCCGCCTCTATGGTGCGGGTTCGTTTACGC
GTGCCGTCGTGCACGATACAAGAGAGGTTTAGACAACGCAAACCCCCGGC
TTGAACCCAAGGGTGTTCCCATCCTGGCATCGCAGGGCGATCCGAACTTC
AGCGCTACGTCGCACCATACGAACGGGTTGTCTTGAAGCTCTACCCGCTT
CAAGTTTGCTTAAAAGAGCAGGAGATGTCCCCTTTCCACCCCCAACCCCA
ACGGACGCGCACTGCCGGCACTTCTCATGGCTCAGCAGCTGACGATGGGG
CAAAGCACCCCCGGAACCTTTTCACGCCGAATCAACCTCCGACGTCCTCT
CCGTCTCCTCCTTTCCTGTCTTTCTGTTTCGTGCGTGTGCTCTTCAAGGT
TGTTGGACCAGAATACAAATCTTCCGGTCGTTCCCCCTCCGCCCCCCGCC
TCTTTTGGGGCACCTTTTCTCGAAAAGCGGGGCGGCGGAGTCTCGCCCAC
CTTCATCAACACCCCCAAACAACCACAGGGCGGCAACGCCCGCGGCATCT
TCGTCGGGAGTCCCGTGCATAGTCCGGGGTGGCCTTCGCCGCGGGGTGGT
GTAGGCGGGTTTACGCCGCGATGGTCGCCGGGTGAGCCGATGAAGTGCTC
TTCGGCTGCTGGAGGGGCCTTTGCGACGATGCCGCCCACGCCACCTCAAA
TATCGTCGAGAACTGTCGGCGGCTGTGCCGGACTGCGTCCCCAAAGCAGT
GCCACGGTAGAGGTTGCCGGGGTAGCGTGGCTGGGGTCTGAGACGACGGC
GTCGACGGATCCGCCTGACGCTGCTGCCGTCGCTGGTGACAAAAACGGTA
GCCAAGAACTTGTCCGCGTTGTGCTGAACGGACCCGATTGGTGCCGAATA
CTGAACCCCCCTATTTCTCCCTTGAGGTCCCAATTTGTCTGACGTGGTTG
GAGCTCAGACGGGGGCGGTGGGGCGTGGGTTTGAGCGTAGCTAAGCATGC
CGGTAGAACGAAACCGACAGTCGCCACCGGGGAGAGCTACGCTCAACCCA
TCACGTGCGTGCTCGCCCCAAGACGGTTGCCGCTCTAACCCTAGTGCCTT
GAGCGTCGGACAACATAGCTCCAACGTCCTTGTTTAGCAATCTCTGTCGG
TGTATCACGTTGAGTCTTATCCCAGGTACAGCGTGTGCCTCCGTGAACTA
CCCTGTATCGTGTTGGGTTGGGGTCATACCTGCCGAACCTCGCCGTCCGC
GGTATCTTGATGAGCGAAAGCTCACCTCCGACCTCCCTTGCAGCTGTGTT
CTCTCTGGAGGCGCGTATCTTGCTGCTCTTCGGATGGCAAAACACCTACT
GGATTGTGTCGCGTGCTTGCGTGGGTCCGCCCCTTCACAGTGGCAGGTGG
AGACACGGCTTTCGGTGCAAACTTGGCCTTCTTCGGCCAGGAGTGCCGGC
TCAATCCCGCTACGGAGGGGAGGCTGTGGGCTGAACGAGTCAGAGCGGGT
GATTCATCGCCCTTA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig111:391617..395231+

>mRNA_P-littoralis_Contig111.71.1 ID=mRNA_P-littoralis_Contig111.71.1|Name=mRNA_P-littoralis_Contig111.71.1|organism=Pylaiella littoralis U1_48|type=CDS|length=729bp|location=Sequence derived from alignment at P-littoralis_Contig111:391617..395231+ (Pylaiella littoralis U1_48)
ATGTCGGTAGCTGGCGCTGTGACAAATGCAGGTAGCGACGGCAAGACGCT
TCTCCACTGCGCCGCCATGTCAGGACAGACCAATGTCATTGCTGAGCTTC
TAGCTGCGGGAGCAAACCCCTACGCACGATGTTCATCGGGAGAAACGCCG
CTCGACCTAGCCGGAAGGTTGTTGGACCAGAATACAAATCTTCCGGTCGT
TCCCCCTCCGCCCCCCGCCTCTTTTGGGGCACCTTTTCTCGAAAAGCGGG
GCGGCGGAGTCTCGCCCACCTTCATCAACACCCCCAAACAACCACAGGGC
GGCAACGCCCGCGGCATCTTCGTCGGGAGTCCCGTGCATAGTCCGGGGTG
GCCTTCGCCGCGGGGTGGTGTAGGCGGGTTTACGCCGCGATGGTCGCCGG
GTGAGCCGATGAAGTGCTCTTCGGCTGCTGGAGGGGCCTTTGCGACGATG
CCGCCCACGCCACCTCAAATATCGTCGAGAACTGTCGGCGGCTGTGCCGG
ACTGCGTCCCCAAAGCAGTGCCACGGTAGAGGTTGCCGGGGTAGCGTGGC
TGGGGTCTGAGACGACGGCGTCGACGGATCCGCCTGACGCTGCTGCCGTC
GCTGTGGCAGGTGGAGACACGGCTTTCGGTGCAAACTTGGCCTTCTTCGG
CCAGGAGTGCCGGCTCAATCCCGCTACGGAGGGGAGGCTGTGGGCTGAAC
GAGTCAGAGCGGGTGATTCATCGCCCTTA
back to top