mRNA_P-littoralis_Contig1.389.4 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1.389.4
Unique NamemRNA_P-littoralis_Contig1.389.4
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1.389.4 vs. uniprot
Match: D7G7E0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7E0_ECTSI)

HSP 1 Score: 243 bits (621), Expect = 5.530e-73
Identity = 127/163 (77.91%), Postives = 134/163 (82.21%), Query Frame = 1 
Query:  184 MSRSDAQAAAKRMYDHEVPDMNPDILRQAMALGPVGKAELTHQASIYLDQFYTETSKLVPDASEEVKPKTPRPLPKDRTRAVARSSEVDAKKGLLTQTQLAAFLERGVAGGSSAPSPPGLLEEFHVSEDDAAVLLRYYRAPDIRMYEDVMTARWHWPTGRDHS 672
            MSR DAQAAAK+MYD +VPDMN DILRQAMA+GPVGKAELTHQ             KLVPDASE V  KTPRPLPKDRTRAVA+S EVDAKKGLLTQTQLAAFLER VA G+ +P P GLLEEFHVSE+DAAVLLRY RAPDIRMYEDVMTARWHWPTG   S
Sbjct:    1 MSRPDAQAAAKKMYDQQVPDMNADILRQAMAMGPVGKAELTHQ-------------KLVPDASEMVTSKTPRPLPKDRTRAVAKSGEVDAKKGLLTQTQLAAFLERRVANGAGSPPPAGLLEEFHVSEEDAAVLLRYCRAPDIRMYEDVMTARWHWPTGGGES 150
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1.389.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G7E0_ECTSI5.530e-7377.91Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1contigP-littoralis_Contig1:1655196..1661347 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2269
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-04_003180.1
Cds size675
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1.389.4prot_P-littoralis_Contig1.389.4Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1 1655196..1659753 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789322.8336987-CDS-P-littoralis_Contig1:1655195..16553701680789322.8336987-CDS-P-littoralis_Contig1:1655195..1655370Pylaiella littoralis U1_48CDSP-littoralis_Contig1 1655196..1655370 +
1680789322.8438628-CDS-P-littoralis_Contig1:1657782..16578411680789322.8438628-CDS-P-littoralis_Contig1:1657782..1657841Pylaiella littoralis U1_48CDSP-littoralis_Contig1 1657783..1657841 +
1680789322.8535178-CDS-P-littoralis_Contig1:1658527..16586441680789322.8535178-CDS-P-littoralis_Contig1:1658527..1658644Pylaiella littoralis U1_48CDSP-littoralis_Contig1 1658528..1658644 +
1680789322.8635118-CDS-P-littoralis_Contig1:1658835..16589841680789322.8635118-CDS-P-littoralis_Contig1:1658835..1658984Pylaiella littoralis U1_48CDSP-littoralis_Contig1 1658836..1658984 +
1680789322.8761644-CDS-P-littoralis_Contig1:1659578..16597531680789322.8761644-CDS-P-littoralis_Contig1:1659578..1659753Pylaiella littoralis U1_48CDSP-littoralis_Contig1 1659579..1659753 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789322.8866491-UTR-P-littoralis_Contig1:1659753..16613471680789322.8866491-UTR-P-littoralis_Contig1:1659753..1661347Pylaiella littoralis U1_48UTRP-littoralis_Contig1 1659754..1661347 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1.389.4

>prot_P-littoralis_Contig1.389.4 ID=prot_P-littoralis_Contig1.389.4|Name=mRNA_P-littoralis_Contig1.389.4|organism=Pylaiella littoralis U1_48|type=polypeptide|length=225bp
MGSFSSKGGAVLGRGARSVAKNVANGKPIPSTGSHLPVKDDLLTNFKPTK
GKFLSQLTIVEMSRSDAQAAAKRMYDHEVPDMNPDILRQAMALGPVGKAE
LTHQASIYLDQFYTETSKLVPDASEEVKPKTPRPLPKDRTRAVARSSEVD
AKKGLLTQTQLAAFLERGVAGGSSAPSPPGLLEEFHVSEDDAAVLLRYYR
APDIRMYEDVMTARWHWPTGRDHS*
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mRNA from alignment at P-littoralis_Contig1:1655196..1661347+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1.389.4 ID=mRNA_P-littoralis_Contig1.389.4|Name=mRNA_P-littoralis_Contig1.389.4|organism=Pylaiella littoralis U1_48|type=mRNA|length=6152bp|location=Sequence derived from alignment at P-littoralis_Contig1:1655196..1661347+ (Pylaiella littoralis U1_48)
ATGGGCAGCTTTTCGAGTAAGGGTGGGGCGGTATTGGGGCGAGGTGCGAG
GTCGGTTGCAAAGAACGTGGCAAATGGGAAGCCCATTCCCTCGACGGGCT
CCCATCTGCCGGTAAAAGACGATCTTCTCACGAATTTCAAGCCCACGAAA
GGCAAGTTTCTCTCTCAACTTACCAGTCCAGTGTCCAGACAGAGGCACTG
CCCGCTTTTCACGGCGGCCCTGAAACGGGCTCACCCACTGAAGCTGTATG
TCACGTTGTCAGCGCTGACTTTTGTGGTGTAAAAAGTGATTCGCCCACTA
CAAAAACGCAAGTTGTCCGGGATTCAAATTCCTCTTGTCACCAGCCTCGG
CTGCTATCAATACAGCAGTACAACGTGTCTTGGGATGTTGACTCGTGTCG
AGAAAGAGAGCCTCATTAGCGTTCGCAGTGCAGTCTGCCGGAGGCAGAAA
TCGATCCCCTGGCTTTTCTTACTTGACTTTTGGAAGAGGGTACTCTCATT
CGCGTAGTTGTCAGCAGGTCGGAGCTGATTTTGTGGCGATGATGTGGTGT
ACAGGATAGGCCTCTTCACAGGCACTATAGCTACACACGAGGGGCGAGGC
TCTCTTCCTGCTGACCTTGACCCCCGTTACGAAGCCAAAAATAGTCCCGG
CTATGATTGGACCTTCTTCACAGTCCCGCACAACGATCCCAACCCTTATG
ATACCAAGTGTGCCGTATCAAATGTCCCCAACTCTTCAAACTCTGAAATA
TTTGATACGCGTCGATGCATGAAAATGGTGATTGCGCAGTACACAAGGCA
CGAAAAAACCCTCCTGATACGGTTGGCCCTAACCACTAGCGTGTACTACA
AGTTGTGCACTGCTGTGCAACCTTTCCCTCTGGCGATTTTTCCGTGTATT
CTGTAACTGCGCCATCGACATGTTCTGGCTTCCGGCAACAGCGGTTTGTT
TCTTGCAAATATTGAAGGACGAACTGCTGCTGGATGGTGGAGATCGTGAC
TTCTAATCCGAAACCCGTTCATGCAGCAGTCAAGTTCAATTTGTTCATTG
ACGAAAGGGTTTTTCAACCATTTTTCCACGAGATGTTACGAACTCCGACC
TTCCCGTGTGTAGCCACGGTATTGATTGCTGTAGTGATATTGATGTCAGA
GGGAGGGCACCATGTAGAGGCGATAACATCGCTGGCACGTCTAGGTCTCC
TGCTGGGGCTGTGGTGTCGGAGGTCGACACCACGATGGTTCGAAAAGCCC
AGAAACCGTCGGCATCTCATCCCGAAATCAAACATCTTGCACTCCTGCTG
CACTCGCCCCCACGGCCCCGAATCTCGTTACTGCGGGTTTTCTGGGGCAG
CTGGCGGTACGAGCTACTGTTTTGGACCCGCAGTTCAAGAAATCGGGGTC
CATCGCGGCGAGAGCAGCAACGGAATATGTTTGGTTTCGGGATGAGATGC
CGACGATTTCTGGACTGCTGTATCGTGCAACATATCTTGGACCTCCGACA
TCGTAGTCCCAGCAGCATATCTGAGCGTGCCAACGCACTCTTCTCCTCTA
CATGATGCCTTCTTCTGATATCCATACCCAACATCGCGACTCTGCACACG
GGAAGGTCATTCTTACGCACTCTCGTGCCCTCTGTCTTGTCTTGGAGATC
AGGAAGATCTATGATCTTGGATTTTTTCAGAGGGCGCATACAAATTGGGA
AATAGACACGATAAGTTGTATGCGCAAGAACGCCCATCTCCCAACCTTTC
TTTGAGCCCCCAACCCTGTCTTCCTGGTCTGATGGCCCTACAGTATTGCA
TGATAATTCTCGGTCGAGGCGCCGAATCCAAATTGTGGCAATTCGTGCAT
ACAGGTCATGTTAAATTGAGAAGCCCCTGCCTGAAAAATGACTTAAAAAT
GGAAAAGAGTGCTGCATAACTTTACTCGAGATAAGGGGAGGCGTGTGTCA
TACGTATGTAAACTGAGAAGGCTGATGAATAGCCTCGGGAGAGAAGTCCT
TTTATTGCGCCCTGGCTGAACACCACTCTGTGTCAGAGGCGCTCGAGGAG
AGAGGCACGAACATATAGGTTGCATGTACGGGTGTTCAAAGAAGACGGGA
TGCTAAAAATATACCTGGTACAATTTCCCGGTCAAACACTGCTTTCCCGG
AACTCTATGATACTATACCCGGCCTCCCTAGAACGCCGGACGAGCCCACA
ATACGCACAGACACCAGCCGTGGCCCTTCGCCTGCAGTGAGGGGGTGTTT
GTTTTTGTCAAGAGGTGGATGTGGATGGTCGGACTGAAGGCCTTGACCTG
AACAAAAGTGTTCGCCCGTTCGTGTTTCGTTAGTTTCGCCGTTGCCGTCG
CCATCGCCTTACTGGCACCTCCCTGCATTTCTTTCTCTCTCGGTGGAATG
GTGCCTTTCTGCACAATGGCACTTTGCTAGCACGTATCTGTCCGCTCTGT
TGTTTCGGAATGAGCTATGATATGATGTTTGCACCCCACTGCTGCGTGGG
TGTGGTTTAAGGTTTCACGTGCTCTGTCGCACAGAGGTGTCTCCGCGGCT
GACGTCCTCATTCGTCCGTCTACTTTTTTGCCGGCAGTTGTCGAGATGTC
GAGATCAGATGCCCAGGCGGCGGCAAAGAGGATGTACGACCATGAGGTGA
GGACTGGTGGCTCTATGAGATCGGGCATGGTACACCATAGATCGGAGATC
GGGCACACTTTGGATGTTACTCGTAGATCGTGATTCGCAGCAGTGAGAGG
GTCATGGTGTCGTGGGGGGGGGGGGTTGCAGGCTCCCGGCGAAGCACAGT
TACAGCCAGGCTCGTCGGCCTGATTGCGGATAGAGGCCTCTTTCTCACCG
ACAGCATGCATGTCATTCCATGGGCTCCGTCAGTTGTTTCGTGTGCATCA
CCATTCCACGATCGCGTCCAAACCTCAACCTTACTTCGTTTGGTTGACAA
ATGAGACTTGCGAGCGCGCGAAGCGTGTGCGAGCTACACTCACCCGTTTT
GTTCTCGGCAGAATACTCTCGCGGTGCGTCATATGTCGCACTGCATCGGG
GAACGATTGAGCCGTTTCGTCAGCCACCTTTGTAGTATTCCTCTTGCTGT
GGTACGAGGACAAATAGTTTCAAGCGACCTGGCTTCGAAATCGCGGTACA
TACCATCCATCCAGAGTGCGCCGACGCCTGGGATGTACCTCATGCGGGAA
ACTCTCCGCGGAATGTACACATAAGTGCGCGTTTAGAAATATGCCTCCGC
TCAAGCTGTCCTGACGCTTCATACACGACACCTGCCCTGCCCCACCCCTG
GTTCCCCCGTTGTCCCGGACGTCGCCCAAAAGGTCCCGGACATGAACCCA
GATATACTGCGCCAAGCGATGGCACTTGGGCCAGTCGGCAAGGCCGAGCT
CACGCACCAGGCAAGCATTTACCTTGACCAATTTTATACTGAAACATCAG
TCCCCTCCTGAAATCTGTTTTACACTCAACCGAAAGCCGGTTTTTCCTTA
TTTTCATGAGCTTATCTCGCGCCGGGAAGATTGTCATCGTCAATGTGTTG
CACTTTGGAACCCTTTATCCACTCTGCTATCCGTTACCCACCCTTACTTT
CGCTGCTTTGTCTTTCATGCTGCAACATCGGCTTTGCCAGAAACTGGTGC
CAGATGCTTCAGAGGAGGTGAAGCCCAAAACACCTCGACCGTTACCGAAG
GACCGAACTCGGGCAGTTGCAAGGAGCAGCGAGGTGGACGCGAAGAAGGG
TTTGCTAACACAGACTCAACTCGCGGCATTTTTGGAAAGGTAATTTTCCG
ACTTTACGTTCGACAAAATGGGTGTGCAGCAAGTGTCACGTAGAATGCAC
CCCAACACCCCCCTCCCCGCCCTTCGGCCTATATTGAGCCCTTTAAATGC
CGGAGATGGCGTTTGCAAGTGCGAGCGGAGCTCCTTCTCAGCTTAGAGAC
GGAAGCAATGGATGGTGTCAGGACGAAAGTGCCAATAGACGAGAACACGC
ACTCTCGCGCCCTATCATAGGAGGGCGTCAGTTTCCTAATACGAAAGCAC
CTGCGCGCGTGCCTCCTAGTACTACCGTACGTCGTTCTGACAGGTGTTAC
CCGCAGCTTTCGACTGCGGAAGCGCCATCAAGTTTCACTTGTGCTCAACC
CACCCGTACCCCCCAGACTCAACTTCCGGCCTTGGCTGCTACATGGGATG
GACGTATATACCCGGATCTTATAACACCGTCGTCGAAACGTCATCCCCTT
CTCTCCCACCCCCTCTCGTCATTTGACCCTCTCGTTGCTTCCTACGGTTG
CATCGCGAATGTGATATCATACGACACCGACGGCGGTATGATTCTGCCGG
CAACAACAATACATGGCGGTGGCGCGAGCGCAGGGGTGTAGCGGGAGGTT
CCAGCGCCCCTTCTCCACCAGGCCTATTGGAAGAATTTCACGTTTCGGAG
GATGACGCGGCGGTGTTGCTGCGCTACTACCGAGCGCCGGATATCCGGAT
GTACGAAGACGTTATGACCGCGCGATGGCACTGGCCAACAGGACGGGATC
ATTCCTAGCTTGATTCGTCCAAAAGAGCTTAGCTTGTGGTTCGTTTTTTT
GTCTGGATGACGGTTCATCTACGATTTTTGAATTTGGGGAGCTACGGAGC
GATTGGGGTGTCTCAATGGCCGTGAATCTGGGTCCTTATTTACGCAGGTG
CAGCAGAAGTGGGTGCTAAGGTATGTGACATCACAGGTTACAGCGTTGGG
GGCTTTTTTAGTGGCCGTAGACGTGAATTATCAGCAGTTGGAGGCACTGT
GAACGAGAGGCTACAAGTAGGATAGACCAACTTTGAAGGCCGTGTGCATT
TTCGTTGGCCCGGTGATGGAGGATGGCTGGTCAGGTCGTTTTCTCTTTTG
CACTCAAAGCACTGTAGTTTAAACAAATAATGATTGTCGCGGTGAAAACC
ACGAGTTCGACCACTTAATATCCCTCAACCCCTAGCCACAGTCAATTTAT
ACAAGGGTTTCGGATCTTGCCGCCTAGGCTGCCCCGCTTCACGTTGTGTA
TTGATATCTGATTTTATGGTTGCACCCATCACGTGCGTTCCCCTCCGTAA
AGCGGCGGCGTTGAACACATGTGGCATCAGCTGCCTCGGCAGAGTTAGAA
ACGGTCTGAAGCAGTATCAAAGGCCCAAAGGAGAAGAGAGTTTGAAACAG
AAGGTCTGCTTCTTGCAAAAGAGGAGCTGCCGTGGGCAGCGCTCGCACCA
AAGATAACGAAAGCATGTACCAGGTACTCCGGAGTACTATTTATTGCCTG
CGGCGGTTCAGTGGCGCATTCGGCACGTCTGTGTGGGTGGGCGCGCTTTG
CACGCGTAGGAACCGCTGCAATCTGCGTCTATCTGCGGTGCAGGCTGAGC
AGTATGGCGATGTCTCATGTGTGCACCGAACAGTTGCATCTAAGATGAAG
AGCACCTCCTGATCTTGCGATCAAACACACACATGCAACGTCCATCGCTA
TCGCTGTTTGTGCCTGCTCAAAAATAGAGCATATTTTACATCAGTAGAAT
AGCATCCATGCGTGCGGATGGAGGGGGGTGGTACACACTGAAACGGTCGG
CGGGCGCCTACAGTAGTCACGGAGGAAACCTCTAGCGTAGCATTGGACAT
CACGCCTCTTACTTCAAGCTAGTATTCGTGCTACGTGACTCGCACACGAT
AGTCAGATGTGCCGATTAGTCAGGAGCGCCGAGAGCGCTCAGGGCAAAAT
AAAATGAACCGAATTGCGGTGAAATTCGTGAGTAGAACCACAACGGCACT
ATTTCCTTCACGCAACGATCATGCTGCTGCTGTGGTTGGCATTTTGTACC
GTACGACCAGGCCTAGGAGTTGTGCAAGCTCCTCCCTGAAAGCATTTTTT
GTGGAGATGAAGTATTCGTGAACGGCAGTGGCCGGCAACGTTTCAAGGTT
GCGCTGCTCAAAAGACACTGCACGAAGTATTTGTTGTCTCGGTTTGAAAA
ACGTTAGCGAGAAAGGTTTGCGTGCACCCGTTTCTTTACAGTGCAAACGA
TAAGTCTCAAGCAGGGCTGACTTACCCACCAAGGAACCCTTCCTCGGTCA
GGCGTCGAACACCGCGACCAGATCAAGAAACATTTCAATGCAATGATCAA
AA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1:1655196..1661347+

>mRNA_P-littoralis_Contig1.389.4 ID=mRNA_P-littoralis_Contig1.389.4|Name=mRNA_P-littoralis_Contig1.389.4|organism=Pylaiella littoralis U1_48|type=CDS|length=675bp|location=Sequence derived from alignment at P-littoralis_Contig1:1655196..1661347+ (Pylaiella littoralis U1_48)
ATGGGCAGCTTTTCGAGTAAGGGTGGGGCGGTATTGGGGCGAGGTGCGAG
GTCGGTTGCAAAGAACGTGGCAAATGGGAAGCCCATTCCCTCGACGGGCT
CCCATCTGCCGGTAAAAGACGATCTTCTCACGAATTTCAAGCCCACGAAA
GGCAAGTTTCTCTCTCAACTTACCATTGTCGAGATGTCGAGATCAGATGC
CCAGGCGGCGGCAAAGAGGATGTACGACCATGAGGTCCCGGACATGAACC
CAGATATACTGCGCCAAGCGATGGCACTTGGGCCAGTCGGCAAGGCCGAG
CTCACGCACCAGGCAAGCATTTACCTTGACCAATTTTATACTGAAACATC
AAAACTGGTGCCAGATGCTTCAGAGGAGGTGAAGCCCAAAACACCTCGAC
CGTTACCGAAGGACCGAACTCGGGCAGTTGCAAGGAGCAGCGAGGTGGAC
GCGAAGAAGGGTTTGCTAACACAGACTCAACTCGCGGCATTTTTGGAAAG
GGGTGTAGCGGGAGGTTCCAGCGCCCCTTCTCCACCAGGCCTATTGGAAG
AATTTCACGTTTCGGAGGATGACGCGGCGGTGTTGCTGCGCTACTACCGA
GCGCCGGATATCCGGATGTACGAAGACGTTATGACCGCGCGATGGCACTG
GCCAACAGGACGGGATCATTCCTAG
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