mRNA_P-littoralis_Contig1109.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1109.3.1
Unique NamemRNA_P-littoralis_Contig1109.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1109.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1109contigP-littoralis_Contig1109:65599..66184 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size273
Hectar predicted targeting categoryother localisation
Exons2
Cds size270
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789439.066965-CDS-P-littoralis_Contig1109:65598..656311680789439.066965-CDS-P-littoralis_Contig1109:65598..65631Pylaiella littoralis U1_48CDSP-littoralis_Contig1109 65599..65631 +
1680789439.0771043-CDS-P-littoralis_Contig1109:65945..661821680789439.0771043-CDS-P-littoralis_Contig1109:65945..66182Pylaiella littoralis U1_48CDSP-littoralis_Contig1109 65946..66182 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1109.3.1prot_P-littoralis_Contig1109.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1109 65599..66182 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1109.3.1

>prot_P-littoralis_Contig1109.3.1 ID=prot_P-littoralis_Contig1109.3.1|Name=mRNA_P-littoralis_Contig1109.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=90bp
PRDDDNGQGQLGTASSRTQALLDAHADKLLADPEAIVQRLVDAVDRLFTE
HYRELIPLWDMTKGLAATRKVILDEWTSLVDILAATSKGK
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mRNA from alignment at P-littoralis_Contig1109:65599..66184+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1109.3.1 ID=mRNA_P-littoralis_Contig1109.3.1|Name=mRNA_P-littoralis_Contig1109.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=586bp|location=Sequence derived from alignment at P-littoralis_Contig1109:65599..66184+ (Pylaiella littoralis U1_48)
CCTCGTGACGACGACAACGGACAGGGTCAGCTGGTCAGTTTTCGATTCTG
CCACATCCAAAACTCATACTCCCGTAGCCCTCGTCTGTGGCGATTTATGG
GATCGGAGTTCAGGCGTGTTCGTTTGACAAAGGATTGAAAAAGATTTATC
TCGTTAAGTCTCTGCCATGTTGTCGGTTCGCCGCACACCGTCTTCTGTCA
CATTCGAGCTCATGGTGGTACTCGCGAATAGGGCTCTATAGTTTCTGTGA
GTTCCGGACAACATCTCTCAAATGCCTGCCCTTGGCATGTCCCACCCCTA
AACCAGCTTTGCCTCGTGCTTTCTTTGGCTGTACCTTTCAACGGCAGGGG
ACCGCCAGCTCCCGGACGCAGGCCTTGTTGGATGCCCACGCAGACAAGCT
GCTGGCGGACCCGGAAGCCATCGTTCAGCGTCTCGTGGATGCCGTCGATC
GACTTTTCACCGAGCACTACAGAGAGTTGATTCCCCTTTGGGATATGACG
AAGGGTCTGGCGGCCACGCGCAAGGTAATCCTCGACGAGTGGACATCATT
GGTTGACATCCTCGCAGCAACGAGCAAGGGGAAAGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1109:65599..66184+

>mRNA_P-littoralis_Contig1109.3.1 ID=mRNA_P-littoralis_Contig1109.3.1|Name=mRNA_P-littoralis_Contig1109.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=270bp|location=Sequence derived from alignment at P-littoralis_Contig1109:65599..66184+ (Pylaiella littoralis U1_48)
CCTCGTGACGACGACAACGGACAGGGTCAGCTGGGGACCGCCAGCTCCCG
GACGCAGGCCTTGTTGGATGCCCACGCAGACAAGCTGCTGGCGGACCCGG
AAGCCATCGTTCAGCGTCTCGTGGATGCCGTCGATCGACTTTTCACCGAG
CACTACAGAGAGTTGATTCCCCTTTGGGATATGACGAAGGGTCTGGCGGC
CACGCGCAAGGTAATCCTCGACGAGTGGACATCATTGGTTGACATCCTCG
CAGCAACGAGCAAGGGGAAA
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