mRNA_P-littoralis_Contig1108.1.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1108.1.1 vs. uniprot
Match: A0A6H5KHG3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG3_9PHAE) HSP 1 Score: 154 bits (389), Expect = 8.950e-43 Identity = 90/184 (48.91%), Postives = 116/184 (63.04%), Query Frame = 2
Query: 179 MTARPAGAASPDADDSEFFSDPEGE--EELEELLGQTPNIAELPPAVAELEEHACSDPATIRAKIATLSAKLAIGAGCNHATPLVTWKEEKAAASTCGLHQANIIAGIRMQDVLDRQTQRGEDVGFCLATRVRNQVYHEAAKDLGCYGAGNQCKAGKCMSAALGVFAGKGNAAVPTETVRALCK 724
MTARP GAA +D+ F DP EELE LL +P P +A + +HA P TIR I +A+LA +GC H PLVTWK+++ AA+TCG QA +++ + VLDRQ D G+CLA RVRNQVY++ + DL C+G GNQC AG CM AAL VFAG+ +P+E VRA+CK
Sbjct: 1 MTARPDGAAEEGGEDT-LFDDPVEVVGEELEGLLRLSPPSTSSTPVLAIITQHAIDSPETIRDFIEETAARLAKESGCQHEAPLVTWKQDREAATTCGRLQAGVLS----RKVLDRQMTHDGDPGYCLAKRVRNQVYYDTSIDLDCHGKGNQCSAGTCMKAALQVFAGEARDGIPSEIVRAMCK 179
BLAST of mRNA_P-littoralis_Contig1108.1.1 vs. uniprot
Match: A0A6H5KG83_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG83_9PHAE) HSP 1 Score: 117 bits (294), Expect = 4.210e-29 Identity = 70/149 (46.98%), Postives = 98/149 (65.77%), Query Frame = 2
Query: 278 QTPNIAELPPAVAELEEHACSDPATIRAKIATLSAKLAIGAGCNHATPLVTWKEEKAAASTCGLHQAN--IIAGIRMQDVLDRQTQRGEDVGFCLATRVRNQVYHEAAKDLGCYGAGNQCKAGKCMSAALGVFAGKGNAAVPTETVRAL 718
+ P+++ AVA L+ HA P TI + I + +LA G C+H P V+W+E+ + S CGLHQ+ ++A +R+QDV R +D G+C+A RVRNQ Y++ AKDLGC+G GNQ KAG+CM AA VFAG GN +PTE V+A+
Sbjct: 35 EPPSLSSEDTAVAILQ-HARLHPETIGSFIQKKAEELAEGV-CDHHQPPVSWQEDPSTTS-CGLHQSASAVLAAVRLQDVFTRYK---DDPGYCVAKRVRNQGYYDTAKDLGCFGRGNQLKAGECMCAATKVFAGDGNDGLPTEVVKAM 177
BLAST of mRNA_P-littoralis_Contig1108.1.1 vs. uniprot
Match: D7G5X1_ECTSI (Ubiquitinyl hydrolase 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5X1_ECTSI) HSP 1 Score: 91.7 bits (226), Expect = 1.470e-19 Identity = 45/75 (60.00%), Postives = 53/75 (70.67%), Query Frame = 2
Query: 500 MQDVLDRQTQRGEDVGFCLATRVRNQVYHEAAKDLGCYGAGNQCKAGKCMSAALGVFAGKGNAAVPTETVRALCK 724
+Q VLDR+ R D G+CLA RVR+QVY+ A+ DL C G GNQC AG CM AA V+AG G VP ETVRA+CK
Sbjct: 63 VQKVLDREVSRDGDAGYCLAKRVRHQVYYGASADLLCKGMGNQCTAGACMRAAAQVYAGDGTDGVPAETVRAMCK 137
BLAST of mRNA_P-littoralis_Contig1108.1.1 vs. uniprot
Match: A0A6H5KKJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKJ8_9PHAE) HSP 1 Score: 89.7 bits (221), Expect = 2.090e-19 Identity = 44/77 (57.14%), Postives = 56/77 (72.73%), Query Frame = 2
Query: 497 RMQDVLDRQTQRGEDVGFCLATRVRNQVYHEAAKDLGCYGAGNQCKAGKCMSAALGVFAGKGNAAVPTETVRALCKF 727
R QDV R +D G+C+A RVRNQVY++ AKDLGC+G GNQ KAG+CM AA VFAG GN +PTE V+A+ ++
Sbjct: 16 RQQDVCTRYK---DDPGYCVAKRVRNQVYYDTAKDLGCFGRGNQLKAGECMRAATKVFAGDGNDGLPTEVVKAMLQY 89
BLAST of mRNA_P-littoralis_Contig1108.1.1 vs. uniprot
Match: A0A6H5KBF5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBF5_9PHAE) HSP 1 Score: 85.5 bits (210), Expect = 5.880e-18 Identity = 43/72 (59.72%), Postives = 48/72 (66.67%), Query Frame = 2
Query: 509 VLDRQTQRGEDVGFCLATRVRNQVYHEAAKDLGCYGAGNQCKAGKCMSAALGVFAGKGNAAVPTETVRALCK 724
VLDRQ R D G+CLA RVR QVY+EA+ DL C G NQC AG CM AA V+ G VP ETVRA+CK
Sbjct: 3 VLDRQVSRDGDAGYCLANRVRYQVYYEASADLLCKGMDNQCTAGACMRAAAQVYVEDGTDGVPAETVRAMCK 74
BLAST of mRNA_P-littoralis_Contig1108.1.1 vs. uniprot
Match: A0A6H5KC65_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC65_9PHAE) HSP 1 Score: 87.8 bits (216), Expect = 9.530e-18 Identity = 50/110 (45.45%), Postives = 71/110 (64.55%), Query Frame = 2
Query: 176 SMTARPAGAASPDADDSEFFSDPEGEEELEELLGQTPNIAELPPAVAELEEHACSDPATIRAKIATLSAKLAIGAGCNHATPLVTWKEEKAAASTCGLHQANIIAGIRMQ 505
SMTAR GAA P+ + F DP EE+E L+G P++++ +A + +HA P T+RA I + LAIGAGC H+ PLVTWK++ A+A TCG HQA++I + +Q
Sbjct: 53 SMTARSRGAA-PEGEPDPIFDDPVVGEEIEGLMGDPPSVSD-DEELAAVRKHAIESPETVRAFIKERARSLAIGAGCPHSLPLVTWKDDPASAVTCGKHQAHLIGNVDLQ 160
BLAST of mRNA_P-littoralis_Contig1108.1.1 vs. uniprot
Match: A0A6H5L174_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L174_9PHAE) HSP 1 Score: 87.8 bits (216), Expect = 1.000e-17 Identity = 50/110 (45.45%), Postives = 71/110 (64.55%), Query Frame = 2
Query: 176 SMTARPAGAASPDADDSEFFSDPEGEEELEELLGQTPNIAELPPAVAELEEHACSDPATIRAKIATLSAKLAIGAGCNHATPLVTWKEEKAAASTCGLHQANIIAGIRMQ 505
SMTAR GAA P+ + F DP EE+E L+G P++++ +A + +HA P T+RA I + LAIGAGC H+ PLVTWK++ A+A TCG HQA++I + +Q
Sbjct: 57 SMTARSRGAA-PEGEPDPIFDDPVVGEEIEGLMGDPPSVSD-DEELAAVRKHAIESPETVRAFIKERARSLAIGAGCPHSLPLVTWKDDPASAVTCGKHQAHLIGNVDLQ 164
BLAST of mRNA_P-littoralis_Contig1108.1.1 vs. uniprot
Match: A0A6H5JMB2_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMB2_9PHAE) HSP 1 Score: 84.7 bits (208), Expect = 1.250e-17 Identity = 41/70 (58.57%), Postives = 50/70 (71.43%), Query Frame = 2
Query: 518 RQTQRGEDVGFCLATRVRNQVYHEAAKDLGCYGAGNQCKAGKCMSAALGVFAGKGNAAVPTETVRALCKF 727
RQ + D G+CLA RVRNQVY++ DL GAGNQC A +CM AAL VF+GKGN +PTE VRA+C +
Sbjct: 9 RQLKLDGDPGYCLAKRVRNQVYYDTPTDLLAKGAGNQCTAAECMVAALKVFSGKGNKGIPTEIVRAMCMY 78
BLAST of mRNA_P-littoralis_Contig1108.1.1 vs. uniprot
Match: A0A6H5KC02_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC02_9PHAE) HSP 1 Score: 84.7 bits (208), Expect = 4.460e-17 Identity = 48/110 (43.64%), Postives = 70/110 (63.64%), Query Frame = 2
Query: 176 SMTARPAGAASPDADDSEFFSDPEGEEELEELLGQTPNIAELPPAVAELEEHACSDPATIRAKIATLSAKLAIGAGCNHATPLVTWKEEKAAASTCGLHQANIIAGIRMQ 505
SMTAR GAA P+ + F DP EE+E L+G P++++ +A + +HA P T+RA I + +AIGAGC H+ PLVTWK++ A+A TCG HQA+++ +Q
Sbjct: 10 SMTARSRGAA-PEGEPDPIFDDPVVGEEIEGLMGDPPSVSD-DEELAAVRKHAIESPETVRAFIKERARSVAIGAGCPHSLPLVTWKDDPASAVTCGKHQAHLVGNADLQ 117
BLAST of mRNA_P-littoralis_Contig1108.1.1 vs. uniprot
Match: A0A6H5KMD0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMD0_9PHAE) HSP 1 Score: 70.1 bits (170), Expect = 6.000e-12 Identity = 34/78 (43.59%), Postives = 52/78 (66.67%), Query Frame = 2
Query: 272 LGQTPNIAELPPAVAELEEHACSDPATIRAKIATLSAKLAIGAGCNHATPLVTWKEEKAAASTCGLHQANIIAGIRMQ 505
+G P++++ +A + +HA P T+RA I + LAIGAGC H+ PLVTWK++ A+A TCG HQA++I + +Q
Sbjct: 1 MGDPPSVSD-DEELAAVRKHAIESPETVRAFIKERARSLAIGAGCPHSLPLVTWKDDPASAVTCGKHQAHLIGNVDLQ 77 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1108.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1108.1.1 >prot_P-littoralis_Contig1108.1.1 ID=prot_P-littoralis_Contig1108.1.1|Name=mRNA_P-littoralis_Contig1108.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=184bp MTARPAGAASPDADDSEFFSDPEGEEELEELLGQTPNIAELPPAVAELEEback to top mRNA from alignment at P-littoralis_Contig1108:2020..3801- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1108.1.1 ID=mRNA_P-littoralis_Contig1108.1.1|Name=mRNA_P-littoralis_Contig1108.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1782bp|location=Sequence derived from alignment at P-littoralis_Contig1108:2020..3801- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1108:2020..3801- >mRNA_P-littoralis_Contig1108.1.1 ID=mRNA_P-littoralis_Contig1108.1.1|Name=mRNA_P-littoralis_Contig1108.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=552bp|location=Sequence derived from alignment at P-littoralis_Contig1108:2020..3801- (Pylaiella littoralis U1_48)back to top |