mRNA_P-littoralis_Contig1107.13.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1107.13.1
Unique NamemRNA_P-littoralis_Contig1107.13.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1107.13.1 vs. uniprot
Match: A0A6H5JRT7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT7_9PHAE)

HSP 1 Score: 173 bits (439), Expect = 7.450e-49
Identity = 86/128 (67.19%), Postives = 98/128 (76.56%), Query Frame = 1 
Query:  388 IQASARVITAEKEFRAETGTTLKVQVAGSSQIEMSSVRYQALGESRPWSFFSHCCNRLGGNIRSVQRCAVCDSHTTILTTCIRALSFMTDLGTNHLESMNGSIAAKATKRSDFPLTHWARAQIGIMNR 771
            I A+ ++  AEK FR   GTTL VQV GSSQIE SSVR+QA GESR W+FFSHCCN LGGNIRS   C  CDSHT     CIR+ +FM DLGT  LES+NGSIA+KA+KR+DFPLTHW RAQI +MNR
Sbjct:    4 IAAARQISEAEKAFRQAIGTTLFVQVMGSSQIEKSSVRHQAWGESRDWAFFSHCCNSLGGNIRSTHPCGPCDSHTAFAVACIRSTAFMPDLGTQFLESVNGSIASKASKRNDFPLTHWPRAQIAVMNR 131
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BLAST of mRNA_P-littoralis_Contig1107.13.1 vs. uniprot
Match: A0A6H5JHR1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHR1_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 1.140e-26
Identity = 73/162 (45.06%), Postives = 96/162 (59.26%), Query Frame = 1 
Query:    1 LGTVKARLWHRVLSVTSRLLAPETEGESTALSEEGLRLLTVLEAAVRATLSAAEQVMEAASQARIEVEVICAPIYAQMTKKEARSTEVPLHGMEGPWEPPNQDPDQISACDGPARLVVIPAVQERKKEYIQASARVITAEKEFRAETGTTLKVQVAGSSQIE 486
            L  VK +LW RV S+T  +L     G + +LS+ G  +L     AV     AA +V + A   R ++E  CA ++  M++KE R+T+VPL G+ GPWEP   +    S CDGPARLV    +Q RK+ YI ASA V+ AE+ FR ETG TL V V GSSQ E
Sbjct:  409 LSKVKEQLWVRV-SLT--ILFFRAAGGAESLSDRGKAMLDSFYQAVMDATGAARRVSDVADSTRADLERACAGVHGHMSEKEKRTTQVPLAGIPGPWEPARTEEGYTSPCDGPARLVQTREIQGRKEAYIGASAAVLEAERIFRKETGRTLTVSVVGSSQRE 567
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BLAST of mRNA_P-littoralis_Contig1107.13.1 vs. uniprot
Match: A0A6H5JU55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU55_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 1.970e-26
Identity = 73/162 (45.06%), Postives = 96/162 (59.26%), Query Frame = 1 
Query:    1 LGTVKARLWHRVLSVTSRLLAPETEGESTALSEEGLRLLTVLEAAVRATLSAAEQVMEAASQARIEVEVICAPIYAQMTKKEARSTEVPLHGMEGPWEPPNQDPDQISACDGPARLVVIPAVQERKKEYIQASARVITAEKEFRAETGTTLKVQVAGSSQIE 486
            L  VK +LW RV S+T  +L     G + +LS+ G  +L     AV     AA +V + A   R ++E  CA ++  M++KE R+T+VPL G+ GPWEP   +    S CDGPARLV    +Q RK+ YI ASA V+ AE+ FR ETG TL V V GSSQ E
Sbjct: 1076 LSKVKEQLWVRV-SLT--ILFFRAAGGAESLSDRGKAMLDSFYQAVMDATGAARRVSDVADSTRADLERACAGVHGHMSEKEKRTTQVPLAGIPGPWEPARTEEGYTSPCDGPARLVQTREIQGRKEAYIGASAAVLEAERIFRKETGRTLTVSVVGSSQRE 1234
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BLAST of mRNA_P-littoralis_Contig1107.13.1 vs. uniprot
Match: A0A6H5KX32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX32_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 4.960e-21
Identity = 54/145 (37.24%), Postives = 80/145 (55.17%), Query Frame = 1 
Query:  337 PARLVVIPAVQERKKEYIQASARVITAEKEFRAETGTTLKVQVAGSSQIEMSSVRYQALGESRPWSFFSHCCNRLGGNIRSVQRCAVCDSHTTILTTCIRALSFMTDLGTNHLESMNGSIAAKATKRSDFPLTHWARAQIGIMNR 771
            PA LV+   ++     Y++A  +V   E      TG  + V  +   Q    ++R+ A  ES PW+FFS C N  G N+ + ++C  C     + T C+RA SF   +GTN LES NGS+AA  +KRSDF ++H  RAQ+ ++ R
Sbjct:  418 PAALVLTTRIKALMVRYVEAVVQVAKEEAAVFVMTGVRIMVVSSHLGQDNTGTLRHMAWRESGPWTFFSPCANEAGVNMSTKRKCPACAEQVLVNTACLRAFSFCLVIGTNALESFNGSVAAMVSKRSDFYISHVGRAQLALLKR 562
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BLAST of mRNA_P-littoralis_Contig1107.13.1 vs. uniprot
Match: A0A6H5JYT6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYT6_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 1.220e-20
Identity = 54/145 (37.24%), Postives = 80/145 (55.17%), Query Frame = 1 
Query:  337 PARLVVIPAVQERKKEYIQASARVITAEKEFRAETGTTLKVQVAGSSQIEMSSVRYQALGESRPWSFFSHCCNRLGGNIRSVQRCAVCDSHTTILTTCIRALSFMTDLGTNHLESMNGSIAAKATKRSDFPLTHWARAQIGIMNR 771
            PA LV+   ++     Y++A  +V   E      TG  + V  +   Q    ++R+ A  ES PW+FFS C N  G N+ + ++C  C     + T C+RA SF   +GTN LES NGS+AA  +KRSDF ++H  RAQ+ ++ R
Sbjct:  276 PAALVLTTRIKALMVRYVEAVVQVAKEETAVFVMTGLRIMVVSSLLGQGNTGTLRHMAWRESGPWTFFSPCANEAGVNMSTKRKCPACAEQVLVNTACLRAFSFCLVIGTNALESFNGSVAAMVSKRSDFYISHVGRAQLALLKR 420
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BLAST of mRNA_P-littoralis_Contig1107.13.1 vs. uniprot
Match: A0A6H5KGM5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGM5_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 6.960e-20
Identity = 46/111 (41.44%), Postives = 66/111 (59.46%), Query Frame = 1 
Query:  439 TGTTLKVQVAGSSQIEMSSVRYQALGESRPWSFFSHCCNRLGGNIRSVQRCAVCDSHTTILTTCIRALSFMTDLGTNHLESMNGSIAAKATKRSDFPLTHWARAQIGIMNR 771
            TG  + V  +   Q    ++R+ A  ES PW+FFS C N  G N+ + ++C  C     + T C+RA SF   +GTN LES NGS+AA  +KRSDF ++H  RAQ+ ++ R
Sbjct:    2 TGVRIMVVSSHLGQDNTGTLRHMAWRESGPWTFFSPCANEAGVNMSTKRKCPACAVQVLVNTACLRAFSFCLVIGTNALESFNGSVAAMVSKRSDFYISHVGRAQLALLKR 112
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BLAST of mRNA_P-littoralis_Contig1107.13.1 vs. uniprot
Match: A0A6H5L2W2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2W2_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 8.490e-20
Identity = 65/180 (36.11%), Postives = 79/180 (43.89%), Query Frame = 1 
Query:  232 MTKKEARSTEVPLHGMEGPWEPPNQDPDQISACDGPARLVVIPAVQERKKEYIQASARVITAEKEFRAETGTTLKVQVAGSSQIEMSSVRYQALGESRPWSFFSHCCNRLGGNIRSVQRCAVCDSHTTILTTCIRALSFMTDLGTNHLESMNGSIAAKATKRSDFPLTHWARAQIGIMNR 771
            +TKKE ++  VPL  + G W+PP  D ++ S  DGPARLVV+PA+Q                                                                         C  CDSH      CIRA +FM DLGT  LES+NGSIAAKATKR DFP+TH+ RAQI +MNR
Sbjct: 1067 LTKKERKAKVVPLTTVRGEWKPP-ADAEEDSPYDGPARLVVVPALQP------------------------------------------------------------------------CGTCDSHVAFSVACIRAPAFMPDLGTQFLESVNGSIAAKATKRCDFPVTHYPRAQIAVMNR 1173
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BLAST of mRNA_P-littoralis_Contig1107.13.1 vs. uniprot
Match: A0A6H5JHD0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHD0_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 2.310e-9
Identity = 32/41 (78.05%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:  649 MTDLGTNHLESMNGSIAAKATKRSDFPLTHWARAQIGIMNR 771
            M  LGTN LESMNG+IAAKATKRSDF  THW+RAQI +MNR
Sbjct:    1 MYGLGTNFLESMNGTIAAKATKRSDFNRTHWSRAQIAMMNR 41
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1107.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5JRT7_9PHAE7.450e-4967.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHR1_9PHAE1.140e-2645.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU55_9PHAE1.970e-2645.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KX32_9PHAE4.960e-2137.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYT6_9PHAE1.220e-2037.24Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KGM5_9PHAE6.960e-2041.44Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L2W2_9PHAE8.490e-2036.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHD0_9PHAE2.310e-978.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1107contigP-littoralis_Contig1107:58656..60388 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size771
Hectar predicted targeting categorymitochondrion
Exons4
Cds size771
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789438.8015263-CDS-P-littoralis_Contig1107:58655..588831680789438.8015263-CDS-P-littoralis_Contig1107:58655..58883Pylaiella littoralis U1_48CDSP-littoralis_Contig1107 58656..58883 +
1680789438.8116806-CDS-P-littoralis_Contig1107:59069..592101680789438.8116806-CDS-P-littoralis_Contig1107:59069..59210Pylaiella littoralis U1_48CDSP-littoralis_Contig1107 59070..59210 +
1680789438.8208928-CDS-P-littoralis_Contig1107:59556..596751680789438.8208928-CDS-P-littoralis_Contig1107:59556..59675Pylaiella littoralis U1_48CDSP-littoralis_Contig1107 59557..59675 +
1680789438.8351166-CDS-P-littoralis_Contig1107:60105..603881680789438.8351166-CDS-P-littoralis_Contig1107:60105..60388Pylaiella littoralis U1_48CDSP-littoralis_Contig1107 60106..60388 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1107.13.1prot_P-littoralis_Contig1107.13.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1107 58656..60388 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1107.13.1

>prot_P-littoralis_Contig1107.13.1 ID=prot_P-littoralis_Contig1107.13.1|Name=mRNA_P-littoralis_Contig1107.13.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=257bp
LGTVKARLWHRVLSVTSRLLAPETEGESTALSEEGLRLLTVLEAAVRATL
SAAEQVMEAASQARIEVEVICAPIYAQMTKKEARSTEVPLHGMEGPWEPP
NQDPDQISACDGPARLVVIPAVQERKKEYIQASARVITAEKEFRAETGTT
LKVQVAGSSQIEMSSVRYQALGESRPWSFFSHCCNRLGGNIRSVQRCAVC
DSHTTILTTCIRALSFMTDLGTNHLESMNGSIAAKATKRSDFPLTHWARA
QIGIMNR
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mRNA from alignment at P-littoralis_Contig1107:58656..60388+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1107.13.1 ID=mRNA_P-littoralis_Contig1107.13.1|Name=mRNA_P-littoralis_Contig1107.13.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1733bp|location=Sequence derived from alignment at P-littoralis_Contig1107:58656..60388+ (Pylaiella littoralis U1_48)
CTTGGTACTGTGAAGGCTCGGCTGTGGCATCGAGTTCTGAGTGTAACTTC
ACGCCTTTTGGCTCCTGAGACCGAGGGGGAGTCCACGGCTCTGTCCGAGG
AGGGTCTGAGGTTGTTGACGGTGTTGGAAGCGGCGGTACGGGCGACCTTA
TCCGCCGCGGAGCAGGTCATGGAAGCAGCTTCGCAAGCTCGCATCGAAGT
CGAGGTCATTTGTGCACCTATTTATGCCGTGAGTGGGTCCCATACTCGTG
CATGTAATCGTTGTGTGCTTACGTAAATGGTCTCGTATTGAGTGCCAGAG
GCACAGCAACATACACCGGTAGGACGCTCTAATGATATCTGCTTCATTTG
TTTTCCCTTTATGTTGATATCAAATACATAACGGCTGCCCGTGACTGCCT
ATCCGCTTGCTCAGCAAATGACCAAGAAGGAGGCAAGGTCGACTGAGGTC
CCCCTGCACGGCATGGAAGGGCCTTGGGAACCGCCTAATCAGGACCCCGA
TCAGATCAGCGCATGTGACGGACCAGCGAGACTAGTAGTTATACCAGCCG
TTCAGGTATGCTTTTGGTATGAAGGCTTTTTCTGGTGTGTTGCGCTTTAT
TGTCTTGCGCAGAAGGAGAGCAGCATTTCGCACAGGTGGTTGACTACTTC
ATTTGTTGTTGCCGAAGGGTATTATTGACGGCACATGTGTTGATGTATTT
TTTCATTCAAACAGCCGCCCGAAGAACATTAGGAGTTGGCATATGTTTTG
ATCTTGCGATGTAAGGTTTTCAACGTGTGCCCCCGCCCCTCACACACCCG
CCACGACATGCACCACACCCGTCACAGCGACCTAACCTCTACGCCATTCG
CGCACTCATTTTGTCATGTTGGCACAACGTTCCTCGACCCTGTCGTTCCA
GGAGCGAAAGAAGGAATACATCCAAGCGTCTGCCAGAGTCATCACGGCCG
AGAAGGAGTTCCGCGCGGAGACCGGCACGACGCTCAAGGTCCAAGTGGCA
GGATCATCCCAGATTGAAATGTAAGTTTACATGACAGTCGGCGGGTTTTG
TCGCCTATATGTGTTTTTTTTTGTCTTCAGCGCCAAGCGTTTTATCCCAT
AATCTGCTCAACTATATTCATGTCGAATACCGATTCTTCGTTCGCCTTTG
TTTTATGGCGAACGAAGAGCCGCCTGCGATGCAACCCTTACAATAACGGA
CACGAGCAAAGGGGGAGGGGGCTACACGCCATGAGGGCTGTATCGTTTTT
GTTTCGTGGATGGGGAATGATTCTACAGAAGAGCATGCGTGCTCGTCTTG
TTATCGATACATTTGCCACAGGCTCGAACCTTTGACCACGCCTCCCCGCC
CTTGTCCCGTCATGAAATCGGCCACCCACAAAGCTCCAGTGCCTCCCCAA
GAAAGCACACGAGTACATGTACCCACTCTATTTCCGTCGATAACATCCAG
GTCTTCCGTGCGGTACCAAGCTTTGGGCGAGAGTCGGCCGTGGTCATTTT
TTTCGCACTGCTGCAATAGGTTGGGAGGGAACATCAGGAGCGTACAACGT
TGCGCGGTTTGTGACTCGCACACCACCATCCTGACGACCTGTATTCGAGC
CCTATCCTTCATGACAGACTTGGGGACCAACCATCTCGAGAGTATGAACG
GTTCCATCGCCGCGAAAGCCACAAAGAGGAGCGACTTCCCGCTCACACAT
TGGGCGCGCGCTCAGATTGGGATCATGAACCGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1107:58656..60388+

>mRNA_P-littoralis_Contig1107.13.1 ID=mRNA_P-littoralis_Contig1107.13.1|Name=mRNA_P-littoralis_Contig1107.13.1|organism=Pylaiella littoralis U1_48|type=CDS|length=771bp|location=Sequence derived from alignment at P-littoralis_Contig1107:58656..60388+ (Pylaiella littoralis U1_48)
CTTGGTACTGTGAAGGCTCGGCTGTGGCATCGAGTTCTGAGTGTAACTTC
ACGCCTTTTGGCTCCTGAGACCGAGGGGGAGTCCACGGCTCTGTCCGAGG
AGGGTCTGAGGTTGTTGACGGTGTTGGAAGCGGCGGTACGGGCGACCTTA
TCCGCCGCGGAGCAGGTCATGGAAGCAGCTTCGCAAGCTCGCATCGAAGT
CGAGGTCATTTGTGCACCTATTTATGCCCAAATGACCAAGAAGGAGGCAA
GGTCGACTGAGGTCCCCCTGCACGGCATGGAAGGGCCTTGGGAACCGCCT
AATCAGGACCCCGATCAGATCAGCGCATGTGACGGACCAGCGAGACTAGT
AGTTATACCAGCCGTTCAGGAGCGAAAGAAGGAATACATCCAAGCGTCTG
CCAGAGTCATCACGGCCGAGAAGGAGTTCCGCGCGGAGACCGGCACGACG
CTCAAGGTCCAAGTGGCAGGATCATCCCAGATTGAAATGTCTTCCGTGCG
GTACCAAGCTTTGGGCGAGAGTCGGCCGTGGTCATTTTTTTCGCACTGCT
GCAATAGGTTGGGAGGGAACATCAGGAGCGTACAACGTTGCGCGGTTTGT
GACTCGCACACCACCATCCTGACGACCTGTATTCGAGCCCTATCCTTCAT
GACAGACTTGGGGACCAACCATCTCGAGAGTATGAACGGTTCCATCGCCG
CGAAAGCCACAAAGAGGAGCGACTTCCCGCTCACACATTGGGCGCGCGCT
CAGATTGGGATCATGAACCGC
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