mRNA_P-littoralis_Contig1107.9.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1107.9.1 vs. uniprot
Match: A0A6H5JU55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU55_9PHAE) HSP 1 Score: 528 bits (1359), Expect = 1.060e-172 Identity = 260/457 (56.89%), Postives = 323/457 (70.68%), Query Frame = 1
Query: 1 MCGAVHEMSSGCPGPLTKAVFSQPRSDSDNFSAKCQTCAAVFARIPVNKPSPKSIALGVLFAGGTIEHFSHSSEYSDCQSPSITTLGRHLPSLCNAVDKVFTETIAENKLKCKREPGRGLVKIAPDKHYFVAN-ATRLEEMMEAGLSVEEGATDNATLPEIAACLMMAAKARGEEPGWVVKDGCVWATPISIALDGSYRNRNHASHAVNVIASVQLMEPDHRGCKNSVIDAVTFGRHILSDAPLGPVCALSRDGGECHIHGKEEDWKVRISHGDGAPPDVHDAAKRLRVANCYSCTGLRSPLSAPGTEPFGVRVLCLRLLLDGFWVESFAHDQDAGVGLIVRSLFGDPLECLDRAHIQKNLKKALVKFMPGYASRVCRYFAYVVPKAKELEAECADGSITRSEAFAEMFVHIIYHLQGDHTYCTSDCAGVEEVLEVDEEPRPGNKEQPDIFDVDALR 1368
M GAVH+ S GCPGPL RSD ++FSA+C+TC AVF R+PV KP K+++LG L AG T EH S E D QSP+ TL RH+ AVD+ + E E + K EPGR V+I +KH+F + + LEE+ + G+ V++G+ DN T PEIAA ++ A A+ E PG+ ++ G V AT ++I+ DGSYRNRNH SH VNV+ASV+ +PDHRG +SV+D VTFGRHI DAPL PVCALSR+ G C +HGK EDW R G+ P+ DAAKRLR NCYS T LRSPLSAP TEP G+ +LCLRL+ +GFWV +FAHDQDAG+G IVR LF D LECLDRAHIQKN+KKA+VKF GYASR CRYFA+VV +A+E+ C D SIT +EAF E F H+++HLQG H YC+S CAG EE + EEPR GN EQPDIFD++ LR
Sbjct: 549 MLGAVHKKSCGCPGPLINPSLGAGRSDYESFSAECRTCGAVFGRLPVEKPDSKALSLGCLLAGSTFEHVEMSQEMGDIQSPTSRTLQRHIEETVVAVDESWEEMFKEVRKSIKNEPGRRTVEIPIEKHFFAHHMVSLLEELKQYGVGVKDGSIDNTTYPEIAAGIIAAKTAKREGPGFQLEGGKVVATLVNISFDGSYRNRNHTSHGVNVVASVKRTKPDHRGLMDSVLDQVTFGRHIGEDAPLQPVCALSRNKGFCRVHGKAEDWDSRRRPAKGSSPEEEDAAKRLRHGNCYSSTCLRSPLSAPATEPLGIMILCLRLMYEGFWVNAFAHDQDAGIGHIVRGLFDDALECLDRAHIQKNMKKAIVKFASGYASRACRYFAWVVREAREVVERCVDDSITLAEAFTEGFAHLVFHLQGVHKYCSSGCAGAEEHVAEGEEPRAGNVEQPDIFDIEELR 1005
BLAST of mRNA_P-littoralis_Contig1107.9.1 vs. uniprot
Match: A0A6H5L2W2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2W2_9PHAE) HSP 1 Score: 458 bits (1178), Expect = 1.720e-144 Identity = 231/477 (48.43%), Postives = 321/477 (67.30%), Query Frame = 1
Query: 1 MCGAVHEMSSGCPGPLTKAVFSQPRSDSDNFSAKCQTCAAVFARIPVNKPSPKSIALGVLFAGGTIEHFSHSSEYSDCQSPSITTLGRHLPSLCNAVDKVFTETIAENKLKCKREPGRGLVKIAPDKHYFVANATRLEEMMEAGLSVEEGATDNATLPEIAACLMMAAKARGEEPGWVVKDGCVWATPISIALDGSYRNRNHASHAVNVIASVQLMEPDHRGCKNSVIDAVTFGRHILSDAPLGPVCALSRDGGECHIHGKEEDWKVRISHGDGAPPDVHDAAKRLRVANCYSCTGLRSPLSAPGTEPFGVRVLCLRLLLDGFWVESFAHDQDAGVGLIVRSLFGDPLECLDRAHIQKNLKKALVKFMPGYASRVCRYFAYVVPKAKELEAECADGSITRSEAFAEMFVHIIYHLQGDHTYCTSDCAGVEEVLEVDEEPRPGNKEQPDIFDVDALRESP-VAAVGSGSGSNDVRAGA 1428
MCG +H + GCPGPL AV S+PRSD D FSA C+ C A+F +PV+KP+ KS+ALGVL AGG ++ + + + SD Q+PS TL R+L + AVD VF+ + +++ K+EPGRG++++ +KHYF N TRL+E+ + ++EG N T +IA L+ + + RGEEPG+ V+ V TP+ +A DGSYRNRNH +H++NV+ S++L E ++RG +++V VTFGRH+ + PVC SR G C +HG +D+K R A V +AA+RLR +NCYS T L SP SAPGTE GV+VL L LL+G+ FAHDQD G+GL+VR + D ECLDR+H+QKNL KA+VKF+PG+A RV R FAY V +++ E +C DGS +R+EAF E F H+++HL+G+H YC+ +C+G E+++ + EEPR QPDIFD+ ALRE VAA G G AGA
Sbjct: 498 MCGHIHRVDVGCPGPLINAVLSKPRSDYDAFSAGCRECGAIFGHVPVSKPNVKSVALGVLLAGGNVDQYVNCNALSDWQAPSKRTLYRYLTEISVAVDVVFSREMKKHREGLKQEPGRGVIRVPIEKHYFAHNETRLKELAKEQGPIKEGHISNTTWTDIAVGLLRSMEDRGEEPGYKVEGDVVVVTPLEVAFDGSYRNRNHTAHSINVVCSLKLREQNNRGLRDAVFGMVTFGRHVGKSLQIDPVCVTSRQG-RCPVHGDAQDFKERAHPPATASASVREAAQRLRNSNCYSGTCLTSPHSAPGTESVGVQVLLLTQLLEGWLPTMFAHDQDVGLGLLVRQVTNDAWECLDRSHVQKNLVKAIVKFLPGFAPRVSRNFAYCVAASRKEEEKCEDGSTSRAEAFVEGFAHLVFHLKGNHQYCSPECSGAEKIVAL-EEPRKTIAPQPDIFDIPALREGGGVAAEELGEGVGVAAAGA 972
BLAST of mRNA_P-littoralis_Contig1107.9.1 vs. uniprot
Match: A0A6H5JHR1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHR1_9PHAE) HSP 1 Score: 388 bits (997), Expect = 2.560e-126 Identity = 193/337 (57.27%), Postives = 233/337 (69.14%), Query Frame = 1
Query: 445 EGATDNATLPEIAACLMMAAKARGEEPGWVVKDGCVWATPISIALDGSYRNRNHASHAVNVIASVQLMEPDHRGCKNSVIDAVTFGRHILSDAPLGPVCALSRDGGECHIHGKEEDWKVRISHGDGAPPDV-----------------------------HDAAKRLRVANCYSCTGLRSPLSAPGTEPFGVRVLCLRLLLDGFWVESFAHDQDAGVGLIVRSLFGDPLECLDRAHIQKNLKKALVKFMPGYASRVCRYFAYVVPKAKELEAECADGSITRSEAFAEMFVHIIYHLQGDHTYCTSDCAGVEEVLEVDEEPRPGNKEQPDIFDVDALR 1368
+G+ DN T PEIAA ++ A A+ E PG+ ++ G V AT ++I+ DGSYRNRNH SH VNV+ASV+ M+PDHRG +SV+D VTFGRHI DAPL PVCALSR+ G C +HGK EDW R G+ P+ DAAKRLR NCYS T LRSPLSAP TEP G+ +LCLRL+ +GFWV +FAHDQDAG+G IVR LF D LECLDRAHIQKN+KKA+VKF GYASR CRYFA+VV +A+E+ C D SIT +EAF E F H+++HLQG H YC+S CAG EE + EEPR GN EQPDIFD++ LR
Sbjct: 2 DGSIDNTTYPEIAAGIIAAKTAKREGPGFQLEGGKVVATLVNISFDGSYRNRNHTSHGVNVVASVKRMKPDHRGLMDSVLDQVTFGRHIGKDAPLQPVCALSRNKGFCRVHGKAEDWDSRRRPAKGSSPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDAAKRLRHGNCYSSTCLRSPLSAPATEPLGIMILCLRLMYEGFWVNAFAHDQDAGIGHIVRGLFDDALECLDRAHIQKNMKKAIVKFASGYASRACRYFAWVVREAREVVERCVDDSITLAEAFTEGFAHLVFHLQGVHKYCSSGCAGAEEHVAEGEEPRAGNVEQPDIFDIEELR 338
BLAST of mRNA_P-littoralis_Contig1107.9.1 vs. uniprot
Match: A0A6H5J8W1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8W1_9PHAE) HSP 1 Score: 150 bits (378), Expect = 3.250e-35 Identity = 78/183 (42.62%), Postives = 114/183 (62.30%), Query Frame = 1
Query: 31 GCPGPLTKAVFSQPRSDSDNFSAKCQTCAAVFARIPVNKPSPKSIALGVLFAGGTIEHFSHSSEYSDCQSPSITTLGRHLPSLCNAVDKVFTETIAENKLKCKREPGRGLVKIAPDKHYFVANATRLEEMMEAG-LSVEEGATDNATLPEIAACLMMAAKARGEEPGWVVKDGCVWATPISIA 576
GCPGPL AV S+ RSD + FSA C+ C A+F IPV+KP+ KSIALGVL AGG ++ + +S +SD Q+PS TL R+L L AVD VF + ++ + K+E GRG++++ + HYF N + + E+ V+EG N T ++A+ L + R +EPG+VV+ V TP+ +A
Sbjct: 486 GCPGPLINAVLSRARSDFEAFSAGCRECGAIFGHIPVSKPNAKSIALGVLLAGGNVDQYVNSGAFSDVQAPSKRTLYRNLSELAVAVDNVFEREMRNHRDQVKKEAGRGVIRVPIEAHYFAHNEEAIRNIAESDTFPVKEGRVSNTTATDMASGLFRSMLERRQEPGYVVEGQHVVVTPLEVA 668 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1107.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1107.9.1 >prot_P-littoralis_Contig1107.9.1 ID=prot_P-littoralis_Contig1107.9.1|Name=mRNA_P-littoralis_Contig1107.9.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=490bp MCGAVHEMSSGCPGPLTKAVFSQPRSDSDNFSAKCQTCAAVFARIPVNKPback to top mRNA from alignment at P-littoralis_Contig1107:55913..58335+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1107.9.1 ID=mRNA_P-littoralis_Contig1107.9.1|Name=mRNA_P-littoralis_Contig1107.9.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2423bp|location=Sequence derived from alignment at P-littoralis_Contig1107:55913..58335+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1107:55913..58335+ >mRNA_P-littoralis_Contig1107.9.1 ID=mRNA_P-littoralis_Contig1107.9.1|Name=mRNA_P-littoralis_Contig1107.9.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1470bp|location=Sequence derived from alignment at P-littoralis_Contig1107:55913..58335+ (Pylaiella littoralis U1_48)back to top |