mRNA_P-littoralis_Contig1107.5.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1107.5.1
Unique NamemRNA_P-littoralis_Contig1107.5.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1107.5.1 vs. uniprot
Match: A0A6H5KKT4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKT4_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 1.000e-5
Identity = 38/86 (44.19%), Postives = 48/86 (55.81%), Query Frame = 3 
Query:    3 DRAIRVFFLNAGDNHAACTVKVVKAATGRACFTNSVV*TTSSLSRGGGSSGVVSPPAADDANPTHRSVSFEVVPPPSSAPAIQLPS 260
            DRA+  FFLNAGDNHA  TVKV+K  TG  C+T++V       S GG      SP  +    PT + + FE+V  P +A A   PS
Sbjct:  316 DRAVPCFFLNAGDNHADVTVKVLKERTGYVCYTSNVAWAALPPS-GGRWECNASPTPSAGTLPTPQHLPFEIVASPPAAAAAAGPS 400
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1107.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KKT4_9PHAE1.000e-544.19Integrase catalytic domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1107contigP-littoralis_Contig1107:39478..39852 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size376
Hectar predicted targeting categoryother localisation
Exons1
Cds size375
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789438.6883798-CDS-P-littoralis_Contig1107:39477..398521680789438.6883798-CDS-P-littoralis_Contig1107:39477..39852Pylaiella littoralis U1_48CDSP-littoralis_Contig1107 39478..39852 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1107.5.1prot_P-littoralis_Contig1107.5.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1107 39478..39852 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1107.5.1

>prot_P-littoralis_Contig1107.5.1 ID=prot_P-littoralis_Contig1107.5.1|Name=mRNA_P-littoralis_Contig1107.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=125bp
MTAPYGFSSSTPETTTRPAPSKLSRLRRDGRASRTAWCERRRRCRGGGGV
VVLFPLLPPTTPTPRTGASLSRLCHRRHLRLPFSCLLGLRRRRLHRHRMP
PRRRHLGVPPLPLCLPGPLLPWSPV
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mRNA from alignment at P-littoralis_Contig1107:39478..39852-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1107.5.1 ID=mRNA_P-littoralis_Contig1107.5.1|Name=mRNA_P-littoralis_Contig1107.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=375bp|location=Sequence derived from alignment at P-littoralis_Contig1107:39478..39852- (Pylaiella littoralis U1_48)
ATGACCGCGCCATACGGGTTTTCTTCCTCAACGCCGGAGACAACCACGCG
GCCTGCACCGTCAAAGTTGTCAAGGCTGCGACGGGACGGGCGTGCTTCAC
GAACAGCGTGGTGTGAACGACGTCGTCGTTGTCGAGGGGGGGGGGGAGTA
GTGGTGTTGTTTCCCCTCCTGCCGCCGACGACGCCAACCCCACGCACAGG
AGCGTCTCTTTCGAGGTTGTGCCACCGCCGTCATCTGCGCCTGCCATTCA
GCTGCCTTCTGGGTCTGCGACGCCGCCGCCTGCATCGTCATCGAATGCCG
CCGCGACGCCGCCACCTTGGAGTGCCGCCCCTTCCCCTTTGCCTGCCTGG
TCCTCTTCTTCCGTGGAGCCCGGTT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1107:39478..39852-

>mRNA_P-littoralis_Contig1107.5.1 ID=mRNA_P-littoralis_Contig1107.5.1|Name=mRNA_P-littoralis_Contig1107.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=375bp|location=Sequence derived from alignment at P-littoralis_Contig1107:39478..39852- (Pylaiella littoralis U1_48)
ATGACCGCGCCATACGGGTTTTCTTCCTCAACGCCGGAGACAACCACGCG
GCCTGCACCGTCAAAGTTGTCAAGGCTGCGACGGGACGGGCGTGCTTCAC
GAACAGCGTGGTGTGAACGACGTCGTCGTTGTCGAGGGGGGGGGGGAGTA
GTGGTGTTGTTTCCCCTCCTGCCGCCGACGACGCCAACCCCACGCACAGG
AGCGTCTCTTTCGAGGTTGTGCCACCGCCGTCATCTGCGCCTGCCATTCA
GCTGCCTTCTGGGTCTGCGACGCCGCCGCCTGCATCGTCATCGAATGCCG
CCGCGACGCCGCCACCTTGGAGTGCCGCCCCTTCCCCTTTGCCTGCCTGG
TCCTCTTCTTCCGTGGAGCCCGGTT
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