mRNA_P-littoralis_Contig1107.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1107.2.1
Unique NamemRNA_P-littoralis_Contig1107.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1107.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1107contigP-littoralis_Contig1107:11048..15531 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size520
Hectar predicted targeting categorysignal peptide
Exons2
Cds size351
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789438.6403694-CDS-P-littoralis_Contig1107:11047..113871680789438.6403694-CDS-P-littoralis_Contig1107:11047..11387Pylaiella littoralis U1_48CDSP-littoralis_Contig1107 11048..11387 -
1680789438.6496434-CDS-P-littoralis_Contig1107:15352..153631680789438.6496434-CDS-P-littoralis_Contig1107:15352..15363Pylaiella littoralis U1_48CDSP-littoralis_Contig1107 15353..15363 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789438.6581602-UTR-P-littoralis_Contig1107:15363..155311680789438.6581602-UTR-P-littoralis_Contig1107:15363..15531Pylaiella littoralis U1_48UTRP-littoralis_Contig1107 15364..15531 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1107.2.1prot_P-littoralis_Contig1107.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1107 11048..15363 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1107.2.1

>prot_P-littoralis_Contig1107.2.1 ID=prot_P-littoralis_Contig1107.2.1|Name=mRNA_P-littoralis_Contig1107.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=117bp
MLNGQDICTTMASYKAAFLVLSCAVLLESASGRQLQESSCNFDTVFSLRY
PCKDRPVVWTFRVCPLTVFHVPSLTTRCRGTGVRFPVNVFLCYFESGYAV
SKIRFGFADEGRDRGPL
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mRNA from alignment at P-littoralis_Contig1107:11048..15531-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1107.2.1 ID=mRNA_P-littoralis_Contig1107.2.1|Name=mRNA_P-littoralis_Contig1107.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4484bp|location=Sequence derived from alignment at P-littoralis_Contig1107:11048..15531- (Pylaiella littoralis U1_48)
AATACATACGTGGTGCTTCTGTGAATTTTCGATATCAACACCGGTATGCT
TTTACTCACAACACAACTTCTTGTAGCTGCCTGTTGTACACAAACGGTTC
CCCCACACGAAGATGGAGGTAATGCCGACTGCTATGGAGGGAACTCTATC
TGAGGGGAGTCTGCCGACATGCTGAATGGGTGAGCTTCGTTGACTCTCTG
AAAAGGGTCAGTAGGGGTAGTAGGGTATGCTGGTGAGCAACACACAATTA
AACACATATTTCTTCATGGTTTTTTCGGTTACTGTATCGATCTCAAACTA
AGGACAACCAACGACGCGCCTGAGTCAGGCCGATACAGGGCACTATCGTG
CACTGCGTTGGAGGCATGGTAGCTCCCGCATTAGCTTAACAATCGTAACT
GCATGCTATTCCACAACCGCCTGTCCTCTGACTTGCTGGTCGTTCCTCTT
CCTTTTATTTATTTTTTGTACCTCCGCTTTTTAGATTTTAGATGAACGCA
GCTGCAGCTGCGTGGACCCAACCCCATTTATTCCTAAAACCGAAATCTAA
TTTCGAGTAAAGATTTTAGATTTTAGATTTGGGCATTCCGCGGGGACAAG
AGCCACCCTCACACCCTTCTTTCACCAGACCGAGCCAGCGAGACGTCAGT
CCTTTTTTTTTTTGAGACTGTCCACCATTCGCCAATCATCGGCGCACCGA
AAACAGTTAATTTTTGGCTCCATGATTACTTTTTTCAGACCCCTGGGGGG
CGTGTGTGTGTGTGTGTGTGTGTGTTGTCATCCCTTTGATTGGACGCCAC
TCTGCGCCTTTCGGGTAGGTAAACTCTCCAACTGGGGTCACACAGGAGGA
AGTCAACACAGGAGTTTTTTTTTTTTCTCCACTTCCCTCTGCGGTGCTTG
CCTTTTAGGTTGAGCTTTTATCGCGAAAAAGGGGACAGCAATCCCTTTCC
CTTGTCGATGGTACGATCGAATTTTGTTTACGAATTAATTGATTGATTTC
CACTTTCACGCGCAATGTGAGAAAAAGGCCCAGATCGTGCTACTGCACTG
GGATTCGAACTCACGCGTGAATGTCAAAAGGTTGCGTGGATAATAAGGCC
CTGTATTAACGACAATCAGGAAATCCAAATAGAAAAATCAAAATAATAGC
AAAATCAAAGTTTGATTTCGCGAAAAACACTGCGAACCACATATTAACGG
ACCAGCTTGGTAGAGGCCTGTAAACGCCGCCGAGATCCACAACGAACCTC
AGATTGATTATGATGTCACCATCGATCGGCACTGCTGTTAACATATTAAC
AAGAGCAGCAGCAGTGCAGATACACGTTGTTTGCTGTTGTTGTCGATTCT
CGTATTAGCTCACTACCGCCGCAGTCTAGCCCGTGGTCACAAACCAGGCA
CATATCGTGCTAGGAGGAAAAAATAAAAAATATATACGAAGTATATGGAA
CATGATCACCCACAGTCAAATCAGATGTGGTACCGTTGGGGTACCATCTG
TGGTGGCCAGAATACCAAACAAATACAGAAAGAATAACAGGCTCGTAAGA
AAAACAAAAATTGGAAACAGTCCGACAAATAAAAAATAACCGAGACAAAC
CTCATCCATAACCATATACTTCGAAGCACTTCGTACATCGAACCAGGGCC
CAGGGCCATGACAGACCAAGGCAGACGCAAATCAGGGCGATGGTCCAGTT
ACTATAAGATCAATAGACAAAAGATAAAAAATAAAATAAAAAAGAAGAAG
ATGTAGGGAGGGCACAAAGACTGAGGGAGTGCATTCGTAGACAAACACAA
CAAACAGGCCGCCAAACAAAGAGGAAGCAGGGGAACGAAAAGGAAAAGAA
GACCGGACGTACCGGAAGTCGGGGGGGGGGGGGGGAGGTAATAAAAAAAT
AAAATAAAAGGGATGCAATCAATCGAAAACATGTATTGCCACGAGGTCTG
CCTGTTCACGCTTGCTCTCCTCAGTCGCACTCATGCCTCCTGCTACTGGC
ACCACCATACCCAGTTGTATCTGCCCCACATCTTTGGCAGCAGCTACATT
ACCAGTTGTTTCTGCCCCACATCTTTGGCAGCAGCTACATTACCACTCCG
CCCTACAGTTTTTTTTCCACTCCGGCCACCCCGTAGCTTGGCATTGGACT
GCTTCTTCTTGTTGTGCTGTGCAACTCCTACCCCACTACCCCGCTGCCCT
TGTGCCCATGTATTGCCACGAGGTCTGCCTGTTCACGCTTGCTCTCCTCA
GTCGCACTCATGCCTCCTGCTACTGGCACCACCATCATACCCAGTTGTTT
CTGCCCCACATATTTGGCAGCAGCTTAATTACCACTCAGCCCTACAGTTT
TTTTTCCACTCCGGCCACCTCGTAGCTTGGCATTGGACTGCTTCTTCTTG
TTGTGCTGTGCAACTCCTACCCCACTACCCCGCTGCCCTTGTGCCCCCCC
TTACTCCTCCTCTCGTTTATCCCCGTGTGCGTGCGTGTGTTGTCATCCCT
TTCATTGGACGCCACTCTACACCTTTCGGGTATGTAGACGCCCCAACCGG
GGTCACACAGACAGGAGGAAGTCAACACAGGAGTTTTTTTTTTTTTGGTC
CACTTCCCTCTACGGTGCTTGCCTTTTTTGGTCGAGCTTTTATCGCGAAA
AAGGCGACAGCAATCCCTTTCCCTCGTCGATGGTACGATCGAATTTTGTT
TACTCACAAATTGATCGTCGTCCACTTTCACGCGCAATGTATGTGAGGAA
AAGCCCCAGATCGTGTTACTGCACTGGGATTCGAACTCACGCGGGAATAT
CAGAAGGTTGCGTGAATAACCAACTGAACCACCGGGGCGACCGGATTGGC
TTCTTTTAATTCTTGTCGTTTCTTTCCGAATGATTTATGATCTCTGTTGA
CTGCGCTGACTGTTTTGGCGGCCACCGTTTGCACTGGTGAAATATAACCC
AAAATTGTACTCCGTATTTCTTGGATGTGCGCATGTTTGTTGGATGGGTT
GGCAATTTGGACAGCAGCAGATTTATCGTCAGCGGACCACTTTCATAATT
GCCCTTGCAACTGCCATGTGGTGAAACGCTTCCGGTATATGTTCAGACTA
ATCAACTTTATCGGCAGTCTCTGTACCGTCTGAAAAAGCTAACTTAAATA
TCGTAAGCAGTGATTATTCGAGGCTCTATCAGTGCAGGTATGGATTTGTC
GGGCGCATTAGTTGTGACCACCTCTTCTACAATTTTATGCCCGGGAGGGA
TGCAGCATTTATTTGCAGGCAAGTATACGGCACCGCTCCGGTCGTAGAGT
CTAACTTTACTACTGAACACTGCTGTGGTACAGGTATTTGTCTGCGGTGG
TGTTTTGTGCCACTTTTCCGATGTTTTGCCGGTGTGGTTCGGACGGAATC
TGTAAAAGAAAGTTCCTCCGTGGCCCACTTCAGAATAGCTCCGAATGCGT
CAGGATTCCAGGAGCATTTCTTTCTTTCGGCTCGGGCGCCATAATCCCGA
TCGAATAGAAAATTCTGTTTGTTTTCCTTTGCACGCCTAAACGATCCACA
ATATCAGACGGCCGAACATGCCGAGCGAAACTCGATCTCTGTGCTCCCAC
ACCACAGTCACACCCGCCAGCGTCGCTCGCGCACAACAACAACATCCACC
AAAAAGTATCGGCATTGGATCAACCCAGGTGATGTGCATGTTCTGGTTGC
TTCCCGATTCGTGCAGCCAGACCCAGCAAAAATTGATTGTCCATCTATCT
ACTGCTGCTGTAGACTAGACGTATGTAGGTCTGCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATCTCTCTCTC
TCGTGTGTGTGTTCTATATCGCGGATCGCGCACTCACTCGCCCTTTACGG
GTAGATGTAGGCAAGGGGAGCGAACCCCCAAGATTCAGTAACCCTTCCCA
GGAGGGCTGAAAGAATGTATTGGTCGTGCAGCCGCCGCAGGGCACACGCC
CTGTGTGCTGTACCCGTTTTGGCCGACTCCAGCTGGTGCGTGATTTTTGC
GGGGAAACCCACCTACTCTCAAAGGCGTGTGCATGTTGTTCACGATTGTT
TTCCTATCCTTGTCGCGGGCGGCCTGGTCTTTCATCATGCTCAGCCAAGA
TATCTGTACGACGATGGCTTCGTATAAGGCAGCCTTCCTCGTGCTCAGCT
GCGCAGTTCTGCTTGAAAGCGCGTCTGGGCGACAACTACAAGAATCTTCG
TGCAACTTCGACACGGTCTTCTCGCTCAGGTATCCGTGCAAGGATCGACC
TGTGGTCTGGACATTCCGCGTGTGTCCTCTCACCGTGTTTCATGTCCCCT
CGTTAACCACTAGATGCAGAGGAACGGGGGTTCGATTCCCGGTGAATGTG
TTCCTTTGCTACTTTGAAAGCGGCTATGCTGTTAGTAAAATCAGATTCGG
CTTCGCCGACGAGGGTAGGGACCGCGGACCCCTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1107:11048..15531-

>mRNA_P-littoralis_Contig1107.2.1 ID=mRNA_P-littoralis_Contig1107.2.1|Name=mRNA_P-littoralis_Contig1107.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=351bp|location=Sequence derived from alignment at P-littoralis_Contig1107:11048..15531- (Pylaiella littoralis U1_48)
ATGCTGAATGGCCAAGATATCTGTACGACGATGGCTTCGTATAAGGCAGC
CTTCCTCGTGCTCAGCTGCGCAGTTCTGCTTGAAAGCGCGTCTGGGCGAC
AACTACAAGAATCTTCGTGCAACTTCGACACGGTCTTCTCGCTCAGGTAT
CCGTGCAAGGATCGACCTGTGGTCTGGACATTCCGCGTGTGTCCTCTCAC
CGTGTTTCATGTCCCCTCGTTAACCACTAGATGCAGAGGAACGGGGGTTC
GATTCCCGGTGAATGTGTTCCTTTGCTACTTTGAAAGCGGCTATGCTGTT
AGTAAAATCAGATTCGGCTTCGCCGACGAGGGTAGGGACCGCGGACCCCT
G
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