mRNA_P-littoralis_Contig1104.5.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1104.5.2
Unique NamemRNA_P-littoralis_Contig1104.5.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1104.5.2 vs. uniprot
Match: A0A6H5L481_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L481_9PHAE)

HSP 1 Score: 399 bits (1026), Expect = 9.020e-128
Identity = 248/457 (54.27%), Postives = 319/457 (69.80%), Query Frame = 1
Query:   19 LDNEDI-TQKQLLVHMQSVCIVYACLAVKRNAGILDKESKLAAAAKGYEEIAVPGFFRWARDNDIVLPAWLTVEKMGCSTLTGAPILFKDGAKLWSRFDTAMRVMKRDFNPIWDRYIKGQLGKNTLPSGQTGDDAIDNLLDGLHAQTPGTVDCPLGEDDLVEATSSGRVGGAGEEKIDGXXXXXXXXXKDTQQGGASGKEGRIDGVKQE-----SXXXXXXXXXXGSPEELGDSNDYPERPKNWMHQYLMIFCLIGRPSSSEDPDLATARKTSGPPGRERTPRKQTTRGGKRKAGXXXXXXXXXXXDIISYSS------GAGSNGNLDSTAIRTFAGAGEAQSRAQVKKESAAVAKNVASEAYRQKRLAQTSQLAQAVVSLSESVAAKRVLDEEAAVRAREVAARARKDQAIRDLQGRMALEEADSPLLLELRAALRLTYNKPVSAFMDATALPAAT 1353
            L+N+ + T KQ ++ +Q+VCIVY+CLAVKRNAG++  E+K AAAA+GY EIAVPGFFRWARDNDI  P+ LT++++G ++  GAP+L+ +G KLW++FD AM  MK+  NPIWDRY+KGQ G N LPSGQTGDDAI+NLLDGL+++T G+ + P+ EDDLVE+T +   G A EEK DG         ++       G++G+   +K+E          XXXX     E+ GD  +YP RP  WMH  L+I+C IGRPS SEDPDLATARKTSGPP           RG KRK+ XXXXXXXXXXX   S         G GS+GNL STAIRTFAGAGE QSRAQV+K+ A V    A+EA+RQKRLAQ  Q+ +AV +L++SVAA+RVLDEEAAVRARE AA +RK + + +++G +   E DS    ELRAA++  Y++P+S FM+A   PAAT
Sbjct:   27 LENKKLFTLKQQMLFIQNVCIVYSCLAVKRNAGVVGTEAKRAAAAQGYREIAVPGFFRWARDNDITFPSELTMKRIGATSTDGAPVLYTNGKKLWTKFDAAMLKMKKFCNPIWDRYVKGQPGGN-LPSGQTGDDAINNLLDGLYSKTKGSAESPVQEDDLVESTPAADGGKAPEEKADGGAPNEDKPDQE-------GEKGKTAVIKKERNPDDDDASVXXXXVPSEDEQAGDDGEYPPRPDGWMHPLLLIYCFIGRPSDSEDPDLATARKTSGPP----------KRGSKRKSXXXXXXXXXXXXXXXSTGESETEPGGVGSDGNLTSTAIRTFAGAGEPQSRAQVQKQQAEVKSKAANEAFRQKRLAQGDQITKAVKTLADSVAARRVLDEEAAVRARETAAESRKQRKVNNMRGLLEFSEVDSAQYYELRAAIKAVYHQPLSDFMEAIP-PAAT 464          
BLAST of mRNA_P-littoralis_Contig1104.5.2 vs. uniprot
Match: A0A6H5JGS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGS6_9PHAE)

HSP 1 Score: 167 bits (422), Expect = 5.420e-42
Identity = 137/396 (34.60%), Postives = 188/396 (47.47%), Query Frame = 1
Query:   10 LVLLDNEDITQKQLLVHMQSVCIVYACLAVKRNAGILDKESKLAAAAKGYEEIAVPGFFRWARDNDIVLPAWLTVEKMGCSTLTGAPILFKDGAKLWSRFDTAMRVMKRDFNPIWDRYIKGQLGKNTLPSGQTGDDAIDNLLDGLHAQTPGTVDCPL----GEDDLVEATSSGRVGGAGEEKIDGXXXXXXXXXKDTQQGGASGKEGRIDGVKQESXXXXXXXXXXGSPEELGD-SNDYPERPKNWMHQYLMIFCLIGRPSSSEDPDLATARKTSGPPGRERTPRKQTTRGGKRKAGXXXXXXXXXXXDIISYSSGAGSNGNLDSTAIRTFAGAGEAQSRAQVKKESAAVAKNVASEAYRQKRLAQTSQLAQAVVSLSESVAAKRVLDEEAAVRAR 1182
            L+L     +++ +LL H+QSVCIVYACLAVKRNAGI+  E+K  AAAKGY++IAVPGF++W R   +                                   A      D   + D    G       P G+  +D +D LL+G++  + G  + P+    G+DDL +       GG  EE                    + G E  + G+K+E              E++ +   +YP+R   WMH YL+ +CLIGR SSSEDP+L TARKT G   R                                 +SGA +  +L S+AIR FAGAG+ QSRAQVKKE AAVA   A E  R+ + A T +   AV +LS +V +++ LDE+AA RAR
Sbjct:   26 LLLGGGNGLSKIKLLKHLQSVCIVYACLAVKRNAGIVSMEAKHKAAAKGYKDIAVPGFYKWLRILQV-----------------------------------AQGQRHNDLAGVADVRAPG------TPXGEQEEDVLDYLLNGVYHLSSGNAEDPIELEDGDDDLED-------GGEPEE--------------------SEGDEPGVGGIKEEPAVGNQGDGDGAPSEDIEEVDGEYPDRGNKWMHPYLLTYCLIGRASSSEDPELRTARKTDGSGSR---------------------------------TSGAHTEVDLSSSAIRMFAGAGKIQSRAQVKKEYAAVAAANAQEQVRRVQQAHTGKQVTAVEALSAAVVSRQALDEDAAHRAR 320          
BLAST of mRNA_P-littoralis_Contig1104.5.2 vs. uniprot
Match: D7FSK1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK1_ECTSI)

HSP 1 Score: 161 bits (407), Expect = 2.420e-40
Identity = 121/314 (38.54%), Postives = 174/314 (55.41%), Query Frame = 1
Query:  319 MRVMKRDFNPIWDRYIKGQLGKNTLPSGQTGDDAIDNLLDGLHAQTPGTVDCPLGEDDLVE-ATSSGRVGGAGEEKIDGXXXXXXXXXKDTQQGGASGKEG---RIDGVKQESXXXXXXXXXXGSPEELGDSND-YPERPKNWMHQYLMIFCLIGRPSSSEDPDLATARKTSGPPGRERTPRKQTTRGGKRKAGXXXXXXXXXXXDIISYSSGAGSNGNLDSTAIRTFAGAGEAQSRAQVKKESAAVAKNVASEAYRQKRLAQTSQLAQAVVSLSESVAAKRVLDEEAAVRAREVAARARKDQAIRDLQGRMAL 1245
            MR MK+ +N +WD  ++GQ G+N LPSG+   DA+D LL+G++  + G  + P+  +D+ +   +    GGA   + +G         +    GGA   EG    + G+K+E              + + +++  YP+RP  WMH YL+ +CLIGRPSSSEDPDL T RKTSGP GR          GGK+K+            +  S +SGA ++ +L S AIR FAGAGE++SRAQVKKE  AVA   A E  R+ +   T +L  AV + S +V +++ LDEEAA R+    AR  K   I DL+G + +
Sbjct:    1 MREMKKTYNKVWDSLVEGQPGEN-LPSGEQEGDALDYLLNGVYHLSTGNAEDPIELEDIDDDLDNDADDGGAAGLQDNGRNDGESPPGQVEDGGGAEESEGGAPAVGGIKEEPAVGNQGSGDGAPSDNIEEADGGYPDRPDKWMHPYLLTYCLIGRPSSSEDPDLRTTRKTSGPKGR----------GGKQKS---KRGSPGTSDESGSETSGAYTDVDLSSNAIRMFAGAGESRSRAQVKKEHEAVAAANAQEQARRVQQTHTGKLVTAVEAWSAAVVSRQALDEEAAHRSHWDYARLAKKAKIDDLRGEVGV 300          
BLAST of mRNA_P-littoralis_Contig1104.5.2 vs. uniprot
Match: A0A6H5JUY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUY9_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 3.330e-39
Identity = 71/119 (59.66%), Postives = 93/119 (78.15%), Query Frame = 1
Query:   13 VLLDNEDITQKQLLVHMQSVCIVYACLAVKRNAGILDKESKLAAAAKGYEEIAVPGFFRWARDNDIVLP-AWLTVEKMGCSTLTGAPILFKDGAKLWSRFDTAMRVMKRDFNPIWDRYI 366
            +LL  + ++Q +LL H+Q+VCIVYACLAVKRNAGI+  E+K  AAAKGY++IAVPGFF+W ++N IV+  AWLT E MG ++L GAP+LF DG KLW RFD  MR MK+ +N +WDR +
Sbjct:   26 LLLGGKGLSQIKLLKHLQNVCIVYACLAVKRNAGIVSTEAKYKAAAKGYKDIAVPGFFKWLKENGIVIKQAWLTFEVMGRTSLNGAPVLFTDGKKLWKRFDKVMREMKKTYNKVWDRCV 144          
BLAST of mRNA_P-littoralis_Contig1104.5.2 vs. uniprot
Match: D7FPI6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPI6_ECTSI)

HSP 1 Score: 152 bits (384), Expect = 2.770e-38
Identity = 72/145 (49.66%), Postives = 103/145 (71.03%), Query Frame = 1
Query:   25 NEDITQKQLLVHMQSVCIVYACLAVKRNAGILDKESKLAAAAKGYEEIAVPGFFRWARDN----DIVLPAWLTVEKMGCSTLTGAPILFKDGAKLWSRFDTAMRVMKRDFNPIWDRYIKGQLGKNTLPSGQTGDDAIDNLLDGLH 447
            +  +T  +LL H+Q+VCIVYACL VKRNAGI+  ++K AAAAKGY++IAV GFF+W ++N          WLT E MG ++++G  +LF  G KLW RFD  MR +K+ +NP+WD +++GQ G + LPSG   +DAI+ LL+G++
Sbjct:   32 SSGLTDAKLLKHLQNVCIVYACLTVKRNAGIVSTQAKHAAAAKGYKDIAVLGFFKWLKENLEADQYFSQPWLTFEVMGRTSMSGDAVLFTHGKKLWKRFDNIMRALKKFYNPVWDSFVEGQPG-DQLPSGSQDEDAIEYLLNGVY 175          
BLAST of mRNA_P-littoralis_Contig1104.5.2 vs. uniprot
Match: A0A6H5KBX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBX2_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 4.590e-36
Identity = 127/330 (38.48%), Postives = 157/330 (47.58%), Query Frame = 1
Query:   43 KQLLVHMQSVCIVYACLAVKRNAGILDKESKLAAAAKGYEEIAVPGFFRWARDN----DIVLPAWLTVEKMGCSTLTGAPILFKDGAKLWSRFDTAMRVMKRDFNPIWDRYIKGQLGKNTLPSGQTGDDAIDNLLDGLHAQTPGTVDCPLGEDDLVEATSSGRVGGAGEEKIDGXXXXXXXXXKDTQQGGASGKEGRIDGVKQESXXXXXXXXXXGSPEELGDSNDYPERPKNWMHQYLMIFCLIGRPSSSEDPDLATARKTSGPPGRERTPRKQTTRGGKRKAGXXXXXXXXXXXDIISYSSGAGSNGNLDSTAIRTFAGAGEAQSRAQ 1020
            +Q+L H+Q+VCIVYACLAVKRNAGI+  ++K AAAA+GY++IAVPGFF+W ++N    D  L  WLT E                                              LG N   + +T   AI+ LLD ++    GT D     +D +E    G  GG GE   DG       XX                      XXXXX      S E   +   +P+RPK WMHQYL+ FCLIGRP SSEDPDL TARKTSG  GR           GK+KA            +  S +SGA +  +L S AIR F GAGE QS+AQ
Sbjct:   15 RQVLKHLQNVCIVYACLAVKRNAGIVSTQAKHAAAAQGYKDIAVPGFFKWLQENLDKEDFFLQPWLTFED--------------------------------------------NLGTNYRRAAKTN--AIEYLLDEVYRMESGTGDA----EDPIELEERG--GGEGEGSEDGSGESSPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDDAP-SEEITREEGGFPQRPKKWMHQYLLTFCLIGRPCSSEDPDLRTARKTSGAKGRGAXXXXXXX--GKQKA---KKGSPGTSDESGSEASGAYTEVDLSSNAIRMFTGAGEIQSQAQ 286          
BLAST of mRNA_P-littoralis_Contig1104.5.2 vs. uniprot
Match: A0A6H5JM89_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM89_9PHAE)

HSP 1 Score: 148 bits (374), Expect = 1.070e-33
Identity = 126/404 (31.19%), Postives = 172/404 (42.57%), Query Frame = 1
Query:   25 NEDITQKQLLVHMQSVCIVYACLAVKRNAGILDKESKLAAAAKGYEEIAVPGFFRW-ARDNDIVLPAWLTVEKMG---------------------------CSTLTGAPILFKDGAKLWSRFDTAMRVMKRDFNPIWDRYIKGQLGKNTLPSGQTGDDAIDNLLDGLHA----QTPGTVDCPLGEDDLVEATSSGRVGGA----------------------GEEKIDGXXXXXXXXXKDTQQGGASGKEGRIDGVKQESXXXXXXXXXXGSPEELGDSND----------YPERPKNWMHQYLMIFCLIGRPSSSEDPDLATARKTSGPPGRERTPRKQTTRGGKRKAGXXXXXXXXXXXDIISYSSGAGSNG-------NLDSTAIRTFAGAGEAQSRAQV 1023
             + +T K+++  +Q+V + Y  + VKRNAG +D + + A   K Y++  VPGF +W + + D   P WLT+E MG                             +L   P L+KDG K+W+R+  A R +++D NP++D+ I  Q G  T PSG+   D +D LL  L      +   TV+    E + + A       G                       G EK  G              G A+G EG IDG                 P+  G+ +D          YPERP NWM  Y + FC  GRPS+SED DLA  +  SGP G  R PRK      K+KA               S   G+GS G       NL    ++ F GAGEAQSRAQV
Sbjct:   27 GDGLTMKEVVRQLQTVALCYTAMGVKRNAGEIDSKKREALLLKAYKDDVVPGFLKWLSEEGDCTTPPWLTMEMMGRVAVHTCRHQWHRNAGAEEQGERETAATESLYEEPKLYKDGKKIWARYLDAFRDIRKDANPVYDKTIGDQPG-GTPPSGEQYADQLDELLQALWEYQCREKNKTVEVTAEEKEFLRARGPSAAKGXXXXXXXXXXXXXLSSTDGEVVQGTEKEGGGADAGKDEEVAAGAGRAAGSEG-IDGSGDGGAGREGQPMEQEQPKTPGEEDDGGSEPESVVQYPERPPNWMPYYFLTFCFFGRPSNSEDTDLAM-KAGSGPSGDSR-PRK------KKKASLGS-----------SSDGGSGSEGGASDPAANLGRAGVKQFVGAGEAQSRAQV 409          
BLAST of mRNA_P-littoralis_Contig1104.5.2 vs. uniprot
Match: A0A6H5JUN8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUN8_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 5.140e-31
Identity = 89/229 (38.86%), Postives = 121/229 (52.84%), Query Frame = 1
Query:  241 MGCSTLTGAPILFKDGAKLWSRFDTAMRVMKRDFNPIWDRYIKGQLGKNTLPSGQTGDDAIDNLLDGLHAQTPGTVDCPLGEDDLVEATSSGRVGGAGEEKIDGXXXXXXXXXKDTQQGGASGKEGRID--------------GVKQESXXXXXXXXXXGSPEELG-DSNDYPERPKNWMHQYLMIFCLIGRPSSSEDPDLATARKTSGPPGRERTPRKQTTRGGKRKA 882
            MG +++TG  +LF DG KLW RF   +R +K+ +NP+   +++GQ G + LPSG  GDDAI+ LLDG++    GT +     +D +E    G  GG GE   D          +D + G   G E  ++              G+K+E              EE+  +   +P+RP  WMHQYL+  CLIGRP SSEDPDL TARK SGP  R  +  K   RGGK+KA
Sbjct:    1 MGKTSMTGGAVLFTDGEKLWKRFYKTLREIKKYYNPV---FVEGQPG-DQLPSGSQGDDAIEYLLDGVYHMESGTGNA----EDPIELEERG--GGEGEGWEDDSGESSPTESEDGESGKQKGTEEAVEPQESSGDDSPAGEGGMKKEPEDDTPGNGDDAPSEEITREEGGFPQRPNKWMHQYLLTLCLIGRPCSSEDPDLRTARKISGPKVRGASGAKG--RGGKQKA 217          
BLAST of mRNA_P-littoralis_Contig1104.5.2 vs. uniprot
Match: A0A6H5JU95_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU95_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 2.770e-27
Identity = 97/202 (48.02%), Postives = 119/202 (58.91%), Query Frame = 1
Query:  733 MHQYLMIFCLIGRPSSSEDPDLATARKTSGPPGRERTPRKQTTRGGKRKAGXXXXXXXXXXXDIISYSSGAGSNGNLDSTAIRTFAGAGEAQSRAQVKKESAAVAKNVASEAYRQKRLAQTSQLAQAVVSLSESVAAKRVLDEEAAVRAREVAARARKDQAIRDLQGRMALEEADSPLLLELRAALRLTYNKPVSAFMDATA 1338
            MH YL+ +CLIGRPSSSEDPDL TARKTSGP GR          GGK+KA               S +SGA ++ +L S+AIR FAGAGE QSRAQVKKE AAVA   A E  R+ + A T  L  AV +LS +V +++ LDEEAA RAR   AR  K   I DL+G++     + P  + LRA++       VS    ATA
Sbjct:    1 MHPYLLTYCLIGRPSSSEDPDLRTARKTSGPKGR----------GGKQKAKKGSPSTSDGSG---SETSGAYTDVDLSSSAIRMFAGAGEVQSRAQVKKEHAAVAAANAQEQARRVQQAHTVFLVTAVGALSAAVVSRQALDEEAAHRARWDYARLAKKAKIDDLRGKLEFT-LEGPTAMALRASIAALX---VSVICSATA 185          
BLAST of mRNA_P-littoralis_Contig1104.5.2 vs. uniprot
Match: A0A6H5KXV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXV2_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 1.010e-26
Identity = 86/164 (52.44%), Postives = 100/164 (60.98%), Query Frame = 1
Query:  700 SNDYPERPKNWMHQYLMIFCLIGRPSSSEDPDLATARKTSGPPGRERTPRKQTTRGGKRKAGXXXXXXXXXXXDIISYSSGAGSNGNLDSTAIRTFAGAGEAQSRAQVKKESAAVAKNVASEAYRQKRLAQ---TSQLAQAVVSLSESVAAKRVLDEEAAVRAR 1182
            S  YP+RP  WMH YL+  CL+GRPSSSEDPDL TARKTSGP GR          GGK+KA               S +SGA +  +L S+AIR FAG GE QSRAQVKKE AAVA   A E   Q R  Q   T +L  AV +LS +V +++ LDEEAA RAR
Sbjct:  116 SGGYPDRPNKWMHPYLLTCCLVGRPSSSEDPDLRTARKTSGPKGR----------GGKQKAKKGSPSTSDGSG---SETSGAYTEVDLSSSAIRMFAGGGEIQSRAQVKKEHAAVAAANAQEQAEQARRVQQAHTGKLVTAVEALSAAVVSRQALDEEAAHRAR 266          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1104.5.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L481_9PHAE9.020e-12854.27Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JGS6_9PHAE5.420e-4234.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSK1_ECTSI2.420e-4038.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JUY9_9PHAE3.330e-3959.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPI6_ECTSI2.770e-3849.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KBX2_9PHAE4.590e-3638.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JM89_9PHAE1.070e-3331.19Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUN8_9PHAE5.140e-3138.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU95_9PHAE2.770e-2748.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KXV2_9PHAE1.010e-2652.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1104contigP-littoralis_Contig1104:11139..14986 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2402
Hectar predicted targeting categoryother localisation
Exons3
Cds size1503
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789438.075541-UTR-P-littoralis_Contig1104:11138..119771680789438.075541-UTR-P-littoralis_Contig1104:11138..11977Pylaiella littoralis U1_48UTRP-littoralis_Contig1104 11139..11977 -
1680789438.1153464-UTR-P-littoralis_Contig1104:14926..149861680789438.1153464-UTR-P-littoralis_Contig1104:14926..14986Pylaiella littoralis U1_48UTRP-littoralis_Contig1104 14927..14986 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789438.0843415-CDS-P-littoralis_Contig1104:11977..131811680789438.0843415-CDS-P-littoralis_Contig1104:11977..13181Pylaiella littoralis U1_48CDSP-littoralis_Contig1104 11978..13181 -
1680789438.094632-CDS-P-littoralis_Contig1104:13940..140341680789438.094632-CDS-P-littoralis_Contig1104:13940..14034Pylaiella littoralis U1_48CDSP-littoralis_Contig1104 13941..14034 -
1680789438.1046247-CDS-P-littoralis_Contig1104:14721..149261680789438.1046247-CDS-P-littoralis_Contig1104:14721..14926Pylaiella littoralis U1_48CDSP-littoralis_Contig1104 14722..14926 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1104.5.2prot_P-littoralis_Contig1104.5.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1104 11978..14926 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1104.5.2

>prot_P-littoralis_Contig1104.5.2 ID=prot_P-littoralis_Contig1104.5.2|Name=mRNA_P-littoralis_Contig1104.5.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=501bp
MQSVCIVYACLAVKRNAGILDKESKLAAAAKGYEEIAVPGFFRWARDNDI
VLPAWLTVEKMGCSTLTGAPILFKDGAKLWSRFDTAMRVMKRDFNPIWDR
YIKGQLGKNTLPSGQTGDDAIDNLLDGLHAQTPGTVDCPLGEDDLVEATS
SGRVGGAGEEKIDGGGEGGGGGAKDTQQGGASGKEGRIDGVKQESEDDDG
NGNGEGSPEELGDSNDYPERPKNWMHQYLMIFCLIGRPSSSEDPDLATAR
KTSGPPGRERTPRKQTTRGGKRKAGAGSSSSSSSSEDIISYSSGAGSNGN
LDSTAIRTFAGAGEAQSRAQVKKESAAVAKNVASEAYRQKRLAQTSQLAQ
AVVSLSESVAAKRVLDEEAAVRAREVAARARKDQAIRDLQGRMALEEADS
PLLLELRAALRLTYNKPVSAFMDATALPAATPASAPGAASPATSAVTSSA
AATASPGLPGFAGAGAGGGCREWCRGGGIEHGRDRRNAYLSDGCDEAHYL
*
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mRNA from alignment at P-littoralis_Contig1104:11139..14986-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1104.5.2 ID=mRNA_P-littoralis_Contig1104.5.2|Name=mRNA_P-littoralis_Contig1104.5.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=3848bp|location=Sequence derived from alignment at P-littoralis_Contig1104:11139..14986- (Pylaiella littoralis U1_48)
GCCGCGAAGCTCGTCTTATTGGACAACGAGGACATAACACAGAAGCAGCT ACTGGTACACATGCAGAGCGTGTGTATAGTCTACGCGTGCCTGGCAGTGA AGCGGAACGCCGGCATATTGGATAAGGAAAGCAAACTCGCTGCTGCGGCG AAAGGATATGAGGAGATCGCCGTTCCAGGCTTCTTTAGGTGGGCACGGGA CAACGATATCGTGCTTCCTGCGTGGCTGACTGTGGAGAAGATGGGGTGCA GTACCCTGACCGGAGGTGAGAATGATGAGCCAGCGAGTACGTGCTAGAGA CGAGGGGAGACGAGGGGGAAAGAAAGAGAGACGTGTGTGGGCGACCCGCC TCGCAAATCCGGTCTGCCTACTGTCGCACTGCTGTGATTATTTTGTTGTA CACGTTATGCGCGAGTGTGAAAGGCACGCTTGTTGATTTAAATCCTCTTG ACACATGAGGCACATGAGGTTTTATCATTTTTTTCACGTGCGGCGTAAAA GCAGCAGCAGAAGTACTTTAAGTACATGAGGGGCTCCTTCTATGCTGCAC GGCAGTACGGTAGCTATTTCGCTTGTACCACAGCATATACGCACTCTGTA GCTCTATTGTCTTCAAAATCGAACTAGCTCTTTCGCCTGTACAGCAGTAT AGTTATGCTGTCCTAAATAACAGCAACATCAGTAACTGCTGCACGAGCGC CTACGTAGCTCTTGTGGAAGTGCAACACATATGGCGATCTCTCTCGAGGG ACCTGCCGGCGCGCACCGTGGACACACCACAAGGTATCTAAAGCATACGT ACAGATTGCAGATGTTGCTGGATTTCATCCCGATGTGCAGATTCGCTCGC TGCAGCTCGTACTGCTGCTGCTGTCAATCGCAGCATCGAAATAGTATCGT AGCTTACGACTCTATGTACACTGCCCTGTTGTCTCTGTCTGCTGCGTCGC AGCCCCGATTCTCTTCAAGGACGGTGCCAAGCTGTGGAGTCGTTTCGACA CGGCGATGCGTGTGATGAAGCGGGACTTTAACCCAATCTGGGACAGGTAC GTTGGACGCATGCGCGTTTTCATTTTCAACACCAATTTTAATTCGCGTTG TACCGTTGACTCGTTCCGTGTAACACCAATTTCGTCGCGACATTCGAAAT CGCGTTGCGTATGGGCGCCATCTTACGTTCAGAGTCAACTATTGATTCGG AGTGAGTTCTTTACTTGCTCTCTATTTCAATCGTTCCTTTTCGTTTTTTT GTTTTGCTTGCACGTAACACGTCGATACCGTTTTCGGGGTCTAGATGGAA CGTTACACCATAATAGCGTTTTTAGGCCTGGGTGACCAATTCAGGCCTGA AACTGTTTCAATTAATTAACATTTTCGAGAAATAAAGAAAATCAGATTCG TCAACCGTAGTCAATATCGAATTCATCCTATTGCCATTGAAATCGCGCTC TGACTCCGTACGTCAGTCGCAGAAAATTTCGCCATCTTCCGATTTATACT TGAATCTGACCAAAGTGGTGTTAATATTGGCTGTGAAATTGGAACGAAAC CCATGCTAGACCAGTGCACTCGACGTGTGAAACACAGCAGTTGTATCTTC ATTTGGCTCAGTGTCTGTTACCCTGGAGAATAGCATAACAAAAAGGGATT CGGCACGACACTTTGGAACGGTCCCGACCTAATGCCACACATAAAAAAAA TGCTACCGTATAACTCGAGTGGATGAGATTACAAGCCTCCTTCACCTCCG TAGTCCGGGTGTCGGGAATCTTACAGTGAATATTGCATGTTTATCCCCCT CCCAGATACATCAAGGGCCAGCTGGGGAAGAACACCCTGCCGTCGGGCCA AACTGGAGACGACGCAATCGACAACCTGCTCGACGGGCTTCACGCCCAGA CCCCTGGCACCGTAGACTGCCCACTCGGGGAGGACGATCTCGTGGAGGCT ACTTCTAGCGGACGTGTGGGAGGGGCAGGGGAGGAGAAGATTGATGGTGG AGGGGAAGGTGGAGGAGGAGGGGCCAAAGACACGCAGCAGGGCGGGGCAA GCGGGAAGGAAGGAAGAATCGATGGTGTCAAGCAGGAGTCAGAAGATGAC GATGGGAACGGGAATGGCGAAGGTTCTCCCGAAGAGCTGGGTGATTCCAA CGATTATCCGGAGAGGCCGAAGAACTGGATGCATCAGTACCTCATGATCT TCTGTCTGATCGGAAGGCCAAGTAGCAGCGAGGATCCCGACCTGGCCACC GCCAGAAAAACGAGTGGCCCTCCAGGCCGGGAGAGGACCCCTCGGAAGCA AACAACGCGGGGGGGAAAGCGTAAGGCGGGGGCGGGCAGCAGCAGCAGCA GCAGCAGTAGCGAGGACATCATTAGCTACTCGAGCGGCGCAGGGTCCAAC GGTAACCTCGACTCGACGGCCATTCGGACGTTTGCCGGGGCGGGTGAGGC TCAAAGTCGAGCTCAAGTCAAGAAAGAGAGCGCGGCGGTGGCAAAAAACG TTGCCTCGGAGGCCTATCGCCAGAAGAGACTGGCGCAAACCTCTCAATTG GCGCAGGCCGTGGTGTCGCTGTCGGAGTCTGTTGCCGCAAAGCGGGTACT AGATGAAGAGGCCGCCGTCCGGGCACGCGAGGTAGCGGCCCGTGCCCGTA AGGACCAGGCGATAAGGGATCTACAGGGGCGAATGGCGTTGGAGGAAGCT GATTCCCCACTTTTGCTCGAGTTGCGTGCCGCACTCCGACTAACGTATAA TAAACCCGTAAGTGCCTTCATGGACGCCACCGCTTTGCCTGCGGCGACAC CCGCCTCAGCACCCGGGGCAGCTTCCCCGGCGACTTCAGCTGTAACATCG TCTGCTGCGGCAACCGCTTCCCCTGGACTGCCGGGCTTTGCCGGCGCCGG TGCCGGTGGGGGGTGCCGGGAATGGTGTAGGGGCGGTGGCATCGAGCACG GGCGGGACCGGAGAAATGCGTATCTGAGCGATGGATGCGATGAGGCCCAT TACTTGTGACGCAGTCTAACGCACTTGGTCATGTAAGCAACCCCCGCCGT GCCATGCTTTTTGGTGCCCATGTACCATCGTTTTTTTTGCTTGCCGTGGG TGTCTTTTGTGCACGGATTTTTTTTTGCGCGGTGCTGACATTCCACCGGG CGCAGCTGCAGCCCCCCCCCCACGTGTTTATTTTGTTACAGCCCATCCAC CAGTCATGGTTTTCTGTGCTGTTGTTATGGGATATCTGGTTGCTTGGGAC GTGGCGCTACTGCTGCGCTGCTGTGCAGGACATGTATAGTAGTGTTCACC CCCGCACCCCCGCTTTTTTTTAATGGTGGGGAGCGTGCACCACTTTTTTT TTTATTTGTGCTATTGCCGTGTGTTATTCTGTGATTTTGTGCGGGATATC CAGTTACTTGGCACGCAGTGTCATTCCACTTTTTTATCAGTACGGCGCAT GCATCATTTCTTATTTTGTGTCGACGTATCTAGTTGATGGGCACATCGTG CAACTGCTGCACTCTGTACACGTGTGCACGTCCCACTTACAGTTTTATTT ACCGGTACGGCGCCTGCACCAGGGTAATTTATTCTCGTTGGTGTCGTGGC CGTGTTTTGTGTATGGGATATCTAGTGCTTGGTTCGTGGTGTTACTGCTA CACTGCTGTGCACATATACCGTGTCGTTTCGCTTTTTATTAGTCATTGGT ACTGCGCATGCACCGTGTTGTTTTTGTGCTGTTGCTTCAGCCCCCCCCCC GCTGTTTATTTTTGTGCATGGTCCGTGCACCGGTTGTTGGTTTGTGTCAG TTATTATTATGTGCGGGATGTAGGTGCTTGTCACGCGGTGCTACTACC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1104:11139..14986-

>mRNA_P-littoralis_Contig1104.5.2 ID=mRNA_P-littoralis_Contig1104.5.2|Name=mRNA_P-littoralis_Contig1104.5.2|organism=Pylaiella littoralis U1_48|type=CDS|length=1503bp|location=Sequence derived from alignment at P-littoralis_Contig1104:11139..14986- (Pylaiella littoralis U1_48)
ATGCAGAGCGTGTGTATAGTCTACGCGTGCCTGGCAGTGAAGCGGAACGC
CGGCATATTGGATAAGGAAAGCAAACTCGCTGCTGCGGCGAAAGGATATG
AGGAGATCGCCGTTCCAGGCTTCTTTAGGTGGGCACGGGACAACGATATC
GTGCTTCCTGCGTGGCTGACTGTGGAGAAGATGGGGTGCAGTACCCTGAC
CGGAGCCCCGATTCTCTTCAAGGACGGTGCCAAGCTGTGGAGTCGTTTCG
ACACGGCGATGCGTGTGATGAAGCGGGACTTTAACCCAATCTGGGACAGA
TACATCAAGGGCCAGCTGGGGAAGAACACCCTGCCGTCGGGCCAAACTGG
AGACGACGCAATCGACAACCTGCTCGACGGGCTTCACGCCCAGACCCCTG
GCACCGTAGACTGCCCACTCGGGGAGGACGATCTCGTGGAGGCTACTTCT
AGCGGACGTGTGGGAGGGGCAGGGGAGGAGAAGATTGATGGTGGAGGGGA
AGGTGGAGGAGGAGGGGCCAAAGACACGCAGCAGGGCGGGGCAAGCGGGA
AGGAAGGAAGAATCGATGGTGTCAAGCAGGAGTCAGAAGATGACGATGGG
AACGGGAATGGCGAAGGTTCTCCCGAAGAGCTGGGTGATTCCAACGATTA
TCCGGAGAGGCCGAAGAACTGGATGCATCAGTACCTCATGATCTTCTGTC
TGATCGGAAGGCCAAGTAGCAGCGAGGATCCCGACCTGGCCACCGCCAGA
AAAACGAGTGGCCCTCCAGGCCGGGAGAGGACCCCTCGGAAGCAAACAAC
GCGGGGGGGAAAGCGTAAGGCGGGGGCGGGCAGCAGCAGCAGCAGCAGCA
GTAGCGAGGACATCATTAGCTACTCGAGCGGCGCAGGGTCCAACGGTAAC
CTCGACTCGACGGCCATTCGGACGTTTGCCGGGGCGGGTGAGGCTCAAAG
TCGAGCTCAAGTCAAGAAAGAGAGCGCGGCGGTGGCAAAAAACGTTGCCT
CGGAGGCCTATCGCCAGAAGAGACTGGCGCAAACCTCTCAATTGGCGCAG
GCCGTGGTGTCGCTGTCGGAGTCTGTTGCCGCAAAGCGGGTACTAGATGA
AGAGGCCGCCGTCCGGGCACGCGAGGTAGCGGCCCGTGCCCGTAAGGACC
AGGCGATAAGGGATCTACAGGGGCGAATGGCGTTGGAGGAAGCTGATTCC
CCACTTTTGCTCGAGTTGCGTGCCGCACTCCGACTAACGTATAATAAACC
CGTAAGTGCCTTCATGGACGCCACCGCTTTGCCTGCGGCGACACCCGCCT
CAGCACCCGGGGCAGCTTCCCCGGCGACTTCAGCTGTAACATCGTCTGCT
GCGGCAACCGCTTCCCCTGGACTGCCGGGCTTTGCCGGCGCCGGTGCCGG
TGGGGGGTGCCGGGAATGGTGTAGGGGCGGTGGCATCGAGCACGGGCGGG
ACCGGAGAAATGCGTATCTGAGCGATGGATGCGATGAGGCCCATTACTTG
TGA
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