mRNA_P-littoralis_Contig1104.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1104.3.1
Unique NamemRNA_P-littoralis_Contig1104.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1104.3.1 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE)

HSP 1 Score: 181 bits (459), Expect = 5.190e-52
Identity = 85/101 (84.16%), Postives = 92/101 (91.09%), Query Frame = 2 
Query:  221 QWRTLIEPSKYPLSVGDLLFSKRLESVRKDVECFFGILKIRFRILKLAMTYQEQERIDYVFFTCCILHNMLHTFDGMDDLEENVNWVSSAELQSTWEHNVD 523
            +WR LIEPSKYPLS  DLLFSKRLESVRKDVECFFGILK+RFRILKLAMTYQ+QER+DYVFFTCCILHNMLHT DGM  LEE+VNWV SAELQ+T  HN+D
Sbjct:  305 KWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILKMRFRILKLAMTYQKQERLDYVFFTCCILHNMLHTHDGMGGLEEDVNWVGSAELQNTSGHNLD 405
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BLAST of mRNA_P-littoralis_Contig1104.3.1 vs. uniprot
Match: A0A6H5JZL5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZL5_9PHAE)

HSP 1 Score: 163 bits (412), Expect = 2.730e-48
Identity = 78/97 (80.41%), Postives = 82/97 (84.54%), Query Frame = 2 
Query:  215 SIQWRTLIEPSKYPLSVGDLLFSKRLESVRKDVECFFGILKIRFRILKLAMTYQEQERIDYVFFTCCILHNMLHTFDGMDDLEENVNWVSSAELQST 505
            S  W+ LIEPSKYPLS  DLLF KRLESVRKDVECFFGILK RFRILKLAM YQ QERID VFFTCCILHNMLHTFDGMD L EN NW+SSA + +T
Sbjct:   15 SNNWQILIEPSKYPLSENDLLFLKRLESVRKDVECFFGILKGRFRILKLAMAYQSQERIDNVFFTCCILHNMLHTFDGMDQLVENTNWISSAGVGAT 111
[Close]
BLAST of mRNA_P-littoralis_Contig1104.3.1 vs. uniprot
Match: A0A6H5JUX7_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUX7_9PHAE)

HSP 1 Score: 165 bits (418), Expect = 3.560e-47
Identity = 79/95 (83.16%), Postives = 83/95 (87.37%), Query Frame = 2 
Query:  221 QWRTLIEPSKYPLSVGDLLFSKRLESVRKDVECFFGILKIRFRILKLAMTYQEQERIDYVFFTCCILHNMLHTFDGMDDLEENVNWVSSAELQST 505
            +W+ LIEPSKYPLS  DLLFSKRLESVRKDVECFFGILK RFRILKLAM YQ QERID VFFTCCILHNMLHTFDGMD L EN NWVSSA + +T
Sbjct:  181 KWQILIEPSKYPLSEDDLLFSKRLESVRKDVECFFGILKGRFRILKLAMAYQSQERIDNVFFTCCILHNMLHTFDGMDQLVENTNWVSSAGVGTT 275
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BLAST of mRNA_P-littoralis_Contig1104.3.1 vs. uniprot
Match: D7FSK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK2_ECTSI)

HSP 1 Score: 159 bits (403), Expect = 2.440e-45
Identity = 76/95 (80.00%), Postives = 81/95 (85.26%), Query Frame = 2 
Query:  221 QWRTLIEPSKYPLSVGDLLFSKRLESVRKDVECFFGILKIRFRILKLAMTYQEQERIDYVFFTCCILHNMLHTFDGMDDLEENVNWVSSAELQST 505
            +W+ LIEPSKYPLS  DLLFSKRLESVRKDVECFFGILK R RIL LAM +Q QERID VFFTCCILHNMLHTFDGMD L EN NWVSSA + +T
Sbjct:  136 KWQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRLRILMLAMAFQSQERIDNVFFTCCILHNMLHTFDGMDQLVENTNWVSSAGVGTT 230
[Close]
BLAST of mRNA_P-littoralis_Contig1104.3.1 vs. uniprot
Match: A0A6H5KNX4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX4_9PHAE)

HSP 1 Score: 161 bits (407), Expect = 1.750e-44
Identity = 78/95 (82.11%), Postives = 82/95 (86.32%), Query Frame = 2 
Query:  221 QWRTLIEPSKYPLSVGDLLFSKRLESVRKDVECFFGILKIRFRILKLAMTYQEQERIDYVFFTCCILHNMLHTFDGMDDLEENVNWVSSAELQST 505
            +W+ LIEPSKYPLS  DLLFSKRLESVRKDVECFFGILK RFRILKLAM YQ QERID VFFTC ILHNMLHTFDGMD L EN NWVSSA + +T
Sbjct:  291 KWQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRFRILKLAMEYQSQERIDNVFFTCYILHNMLHTFDGMDQLVENTNWVSSAGVGAT 385
[Close]
BLAST of mRNA_P-littoralis_Contig1104.3.1 vs. uniprot
Match: A0A6H5JXJ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXJ4_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 2.320e-42
Identity = 69/85 (81.18%), Postives = 72/85 (84.71%), Query Frame = 2 
Query:  236 IEPSKYPLSVGDLLFSKRLESVRKDVECFFGILKIRFRILKLAMTYQEQERIDYVFFTCCILHNMLHTFDGMDDLEENVNWVSSA 490
            +EP+KYPLS  D+LFSKRLESVRKDVECFFGILK RFRILKL M Y EQERID VFFTCCILHNMLH FDGMD L EN  WVS A
Sbjct:    1 MEPTKYPLSENDILFSKRLESVRKDVECFFGILKGRFRILKLVMAYHEQERIDNVFFTCCILHNMLHIFDGMDQLVENTLWVSGA 85
[Close]
BLAST of mRNA_P-littoralis_Contig1104.3.1 vs. uniprot
Match: A0A6H5L8U1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8U1_9PHAE)

HSP 1 Score: 147 bits (370), Expect = 8.520e-42
Identity = 69/85 (81.18%), Postives = 75/85 (88.24%), Query Frame = 2 
Query:  236 IEPSKYPLSVGDLLFSKRLESVRKDVECFFGILKIRFRILKLAMTYQEQERIDYVFFTCCILHNMLHTFDGMDDLEENVNWVSSA 490
            +EP++YPLS  D+LFSKRLESVRKDVECFFGILK RFRILKLAM Y EQERID VFFTCCILHNMLHTFDGMD +  N +WVSSA
Sbjct:    1 MEPTEYPLSEKDILFSKRLESVRKDVECFFGILKGRFRILKLAMAYPEQERIDNVFFTCCILHNMLHTFDGMDQVMGNTHWVSSA 85
[Close]
BLAST of mRNA_P-littoralis_Contig1104.3.1 vs. uniprot
Match: A0A6H5JHI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 2.350e-41
Identity = 71/90 (78.89%), Postives = 77/90 (85.56%), Query Frame = 2 
Query:  221 QWRTLIEPSKYPLSVGDLLFSKRLESVRKDVECFFGILKIRFRILKLAMTYQEQERIDYVFFTCCILHNMLHTFDGMDDLEENVNWVSSA 490
            +W+ L+EP+KYPLS  D+LFSKRLESVRKDVECFFGILK  FRI K+AM Y EQERID VFFTCCILHNMLHTFDGMD L EN  WVSSA
Sbjct:  276 KWKILMEPTKYPLSENDILFSKRLESVRKDVECFFGILKGCFRIQKVAMAYHEQERIDNVFFTCCILHNMLHTFDGMDQLVENTLWVSSA 365
[Close]
BLAST of mRNA_P-littoralis_Contig1104.3.1 vs. uniprot
Match: A0A6H5L135_9PHAE (Uncharacterized protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L135_9PHAE)

HSP 1 Score: 145 bits (365), Expect = 4.580e-41
Identity = 67/107 (62.62%), Postives = 80/107 (74.77%), Query Frame = 2 
Query:  194 LFFVFVRSIQWRTLIEPSKYPLSVGDLLFSKRLESVRKDVECFFGILKIRFRILKLAMTYQEQERIDYVFFTCCILHNMLHTFDGMDDLEENVNWVSSAELQSTWEH 514
            L++   + +QW TLI PSKYP +  D  FS+ LESVRKDVECFF ILK RFRILKL + Y+ +E ID +F TCCILHNMLHTFDGMD  EE+V+WV SA L   W+H
Sbjct:    2 LWYCCTQQLQWVTLIAPSKYPANSEDTAFSRTLESVRKDVECFFDILKGRFRILKLRLGYRSKEDIDNIFSTCCILHNMLHTFDGMDVFEEDVDWVGSAGLHDPWDH 108
[Close]
BLAST of mRNA_P-littoralis_Contig1104.3.1 vs. uniprot
Match: A0A6H5JTC6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTC6_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 2.330e-40
Identity = 65/99 (65.66%), Postives = 77/99 (77.78%), Query Frame = 2 
Query:  221 QWRTLIEPSKYPLSVGDLLFSKRLESVRKDVECFFGILKIRFRILKLAMTYQEQERIDYVFFTCCILHNMLHTFDGMDDLEENVNWVSSAELQSTWEHN 517
            +W TLI PSKYP+   DL FSKRLESVRKDVECFFGI+K  FRILKL++ Y +QE ID VFFTCCILHNMLH++D   ++EE  NW  +A L + WEHN
Sbjct:   93 KWVTLIPPSKYPIDQNDLAFSKRLESVRKDVECFFGIVKGLFRILKLSIPYHKQEDIDNVFFTCCILHNMLHSYDNKSEMEEEPNWAGNAGLHNAWEHN 191
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1104.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JBE2_9PHAE5.190e-5284.16Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZL5_9PHAE2.730e-4880.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUX7_9PHAE3.560e-4783.16DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
D7FSK2_ECTSI2.440e-4580.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KNX4_9PHAE1.750e-4482.11DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JXJ4_9PHAE2.320e-4281.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L8U1_9PHAE8.520e-4281.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHI0_9PHAE2.350e-4178.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L135_9PHAE4.580e-4162.62Uncharacterized protein n=5 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTC6_9PHAE2.330e-4065.66DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1104contigP-littoralis_Contig1104:8977..9499 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FSK2
PFAMsPlant_tran
Model size525
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.31e-46
EggNOG OGs2E2RF@1|root,2S9YA@2759|Eukaryota
DescriptionPlant transposon protein
Cds size432
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789438.0372813-UTR-P-littoralis_Contig1104:8976..90671680789438.0372813-UTR-P-littoralis_Contig1104:8976..9067Pylaiella littoralis U1_48UTRP-littoralis_Contig1104 8977..9067 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789438.0490038-CDS-P-littoralis_Contig1104:9067..94991680789438.0490038-CDS-P-littoralis_Contig1104:9067..9499Pylaiella littoralis U1_48CDSP-littoralis_Contig1104 9068..9499 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1104.3.1prot_P-littoralis_Contig1104.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1104 9068..9499 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1104.3.1

>prot_P-littoralis_Contig1104.3.1 ID=prot_P-littoralis_Contig1104.3.1|Name=mRNA_P-littoralis_Contig1104.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=144bp
MKQLTSLHSSFSTQSSKWNAVQDDLLILDHSRCALFFVFVRSIQWRTLIE
PSKYPLSVGDLLFSKRLESVRKDVECFFGILKIRFRILKLAMTYQEQERI
DYVFFTCCILHNMLHTFDGMDDLEENVNWVSSAELQSTWEHNVD
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mRNA from alignment at P-littoralis_Contig1104:8977..9499+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1104.3.1 ID=mRNA_P-littoralis_Contig1104.3.1|Name=mRNA_P-littoralis_Contig1104.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=523bp|location=Sequence derived from alignment at P-littoralis_Contig1104:8977..9499+ (Pylaiella littoralis U1_48)
AAATTGTCCCCCACGTCCTCTTGGGTGCTGTGGACATGATTGTGTGACAC
TGAATTGCTCCCCATAATGGTGTTGTTGAAGCTGTGGGGGGATGAAGCAG
TTGACAAGTTTACACAGTTCGTTTAGTACCCAATCCTCAAAATGGAACGC
GGTACAGGACGATTTATTAATACTTGATCATTCCAGGTGCGCCCTTTTTT
TTGTGTTCGTTCGTTCTATTCAGTGGCGGACGCTGATCGAGCCCTCCAAG
TACCCGCTGAGCGTAGGCGACTTGCTCTTCTCGAAGAGGCTGGAGAGCGT
AAGGAAGGATGTGGAGTGCTTCTTCGGCATTCTGAAGATTCGCTTCAGAA
TCCTCAAGCTCGCCATGACCTACCAGGAGCAGGAGCGCATTGACTACGTG
TTCTTCACGTGCTGCATCCTGCACAACATGCTGCATACCTTCGACGGCAT
GGACGACCTGGAGGAGAACGTCAACTGGGTCAGCAGTGCCGAGCTCCAGA
GCACGTGGGAGCACAACGTGGAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1104:8977..9499+

>mRNA_P-littoralis_Contig1104.3.1 ID=mRNA_P-littoralis_Contig1104.3.1|Name=mRNA_P-littoralis_Contig1104.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=432bp|location=Sequence derived from alignment at P-littoralis_Contig1104:8977..9499+ (Pylaiella littoralis U1_48)
ATGAAGCAGTTGACAAGTTTACACAGTTCGTTTAGTACCCAATCCTCAAA
ATGGAACGCGGTACAGGACGATTTATTAATACTTGATCATTCCAGGTGCG
CCCTTTTTTTTGTGTTCGTTCGTTCTATTCAGTGGCGGACGCTGATCGAG
CCCTCCAAGTACCCGCTGAGCGTAGGCGACTTGCTCTTCTCGAAGAGGCT
GGAGAGCGTAAGGAAGGATGTGGAGTGCTTCTTCGGCATTCTGAAGATTC
GCTTCAGAATCCTCAAGCTCGCCATGACCTACCAGGAGCAGGAGCGCATT
GACTACGTGTTCTTCACGTGCTGCATCCTGCACAACATGCTGCATACCTT
CGACGGCATGGACGACCTGGAGGAGAACGTCAACTGGGTCAGCAGTGCCG
AGCTCCAGAGCACGTGGGAGCACAACGTGGAC
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