mRNA_P-littoralis_Contig1103.15.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1103.15.1
Unique NamemRNA_P-littoralis_Contig1103.15.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1103.15.1 vs. uniprot
Match: A0A0F9VR03_9ZZZZ (DctM domain-containing protein n=2 Tax=root TaxID=1 RepID=A0A0F9VR03_9ZZZZ)

HSP 1 Score: 581 bits (1498), Expect = 3.360e-196
Identity = 334/369 (90.51%), Postives = 346/369 (93.77%), Query Frame = 2
Query: 1001 EKVGYSGRSAGAIEAAASTGGQIMPPIMGAGAFIMAEVTGIPYREIAVAALIPAALYFLSVYCMVDFEAAKKGMRGMRKDEIPQFRRLAKHAYLFAPIIILIVALFMGYSVIRAGTLATASAAVVSWISPNKMGIRAILRALQLAGTMSIQIIAVCACAGLIVGVISLTGVGARFSSLLLGLAGVSQLLALFFAMCISILLGMGMPTTAAYAVAASVVALV*SILALTRL-SPTSSCSTSRLCQLSPPVALASYAAAGISGDNAMGTSVASFKIGLAAFIVPFMFFYSPAMLMEGSAMQIARVAITASLGIILLAGVVQAWFFGPVKTWQRVIMVVGAMFMIYGGIYTDIAGLAIGVTIFLMQRKLYGS 2104
            +KVGYSGRSAGAIEAAASTGGQIMPPIMGAGAFIMAEVTGIPYREIAVAALIPAALYFLSVYCMVDFEAAKKGMRGMRKDEIPQFRRLAKHAYLFAPIIILI ALFMGYSVIRAGTLATASAAVVSWISPNKMGIR+ILRALQLAGTMSIQIIAVCACAGLIVGVISLTGVGARFSSLLLGLAGVSQLLALFFAMCISI+LGMGMPTTAAYAVAASVVA     + +  L +       + +  ++PPVALASYAAAGISGDNAMGTSVASFKIGLAAFIVPFMFFYSPAMLMEGSAMQIARVAITASLGIILLAGVVQAWFFGPVK WQRVIM+VGAMFMIYGGIYTDIAGLAIGV IFLMQRK +GS
Sbjct:  358 KKVGYSGRSAGAIEAAASTGGQIMPPIMGAGAFIMAEVTGIPYREIAVAALIPAALYFLSVYCMVDFEAAKKGMRGMRKDEIPQFRRLAKHAYLFAPIIILIAALFMGYSVIRAGTLATASAAVVSWISPNKMGIRSILRALQLAGTMSIQIIAVCACAGLIVGVISLTGVGARFSSLLLGLAGVSQLLALFFAMCISIMLGMGMPTTAAYAVAASVVAPGLINIGIEPLVAHFFVFYFAVMSAITPPVALASYAAAGISGDNAMGTSVASFKIGLAAFIVPFMFFYSPAMLMEGSAMQIARVAITASLGIILLAGVVQAWFFGPVKAWQRVIMLVGAMFMIYGGIYTDIAGLAIGVAIFLMQRKQHGS 726          
BLAST of mRNA_P-littoralis_Contig1103.15.1 vs. uniprot
Match: A0A556W295_HALSX (TRAP transporter permease n=1 Tax=Halomonas sp. TaxID=1486246 RepID=A0A556W295_HALSX)

HSP 1 Score: 551 bits (1421), Expect = 1.220e-184
Identity = 315/377 (83.55%), Postives = 338/377 (89.66%), Query Frame = 2
Query: 1001 EKVGYSGRSAGAIEAAASTGGQIMPPIMGAGAFIMAEVTGIPYREIAVAALIPAALYFLSVYCMVDFEAAKKGMRGMRKDEIPQFRRLAKHAYLFAPIIILIVALFMGYSVIRAGTLATASAAVVSWISPNKMGIRAILRALQLAGTMSIQIIAVCACAGLIVGVISLTGVGARFSSLLLGLAGVSQLLALFFAMCISILLGMGMPTTAAYAVAASVVALV*SILALTRL-SPTSSCSTSRLCQLSPPVALASYAAAGISGDNAMGTSVASFKIGLAAFIVPFMFFYSPAMLMEGSAMQIARVAITASLGIILLAGVVQAWFFGPVKTWQRVIMVVGAMFMIYGGIYTDIAGLAIGVTIFLMQRKLYGSSANTAQAG 2128
            +KVGY GRSAGAIEAAASTGGQIMPPIMGAGAFIMAE+TGIPY EIAVAA+IPA LYFLSVYCMVDFEAA+KGMRGMR+DEIPQFR+LAK  YLFAPIIILIVALFMGYSVIRAGTLATASAAVVSWISPNKMGI AILRALQLAG MSIQIIAVCACAGLIVGVISLTGVGARFSSLLLG+AGVSQLLALFFAMCISILLGMGMPTTAAYAVAASVVA     + +  L +       + +  ++PPVALASYAAAGISGDNAMGTSVASFKIGLAAFIVPFMFFYSPAMLMEGSAMQI RV +TA+LGIILLAGVVQAW FGPVKTWQRV+M++GA+FMIYGGIYTDIAGLAIG  +  MQR+L+GS    A  G
Sbjct:  356 KKVGYPGRSAGAIEAAASTGGQIMPPIMGAGAFIMAEITGIPYTEIAVAAIIPAILYFLSVYCMVDFEAARKGMRGMREDEIPQFRKLAKQVYLFAPIIILIVALFMGYSVIRAGTLATASAAVVSWISPNKMGITAILRALQLAGIMSIQIIAVCACAGLIVGVISLTGVGARFSSLLLGVAGVSQLLALFFAMCISILLGMGMPTTAAYAVAASVVAPGLINIGIEPLIAHFFVFYFAVVSAITPPVALASYAAAGISGDNAMGTSVASFKIGLAAFIVPFMFFYSPAMLMEGSAMQILRVGLTATLGIILLAGVVQAWLFGPVKTWQRVVMLIGAIFMIYGGIYTDIAGLAIGAVLLAMQRRLHGSGKAAASTG 732          
BLAST of mRNA_P-littoralis_Contig1103.15.1 vs. uniprot
Match: A0A7X4G119_9GAMM (TRAP transporter fused permease subunit n=2 Tax=Halomonas TaxID=2745 RepID=A0A7X4G119_9GAMM)

HSP 1 Score: 549 bits (1414), Expect = 1.210e-183
Identity = 310/377 (82.23%), Postives = 339/377 (89.92%), Query Frame = 2
Query: 1001 EKVGYSGRSAGAIEAAASTGGQIMPPIMGAGAFIMAEVTGIPYREIAVAALIPAALYFLSVYCMVDFEAAKKGMRGMRKDEIPQFRRLAKHAYLFAPIIILIVALFMGYSVIRAGTLATASAAVVSWISPNKMGIRAILRALQLAGTMSIQIIAVCACAGLIVGVISLTGVGARFSSLLLGLAGVSQLLALFFAMCISILLGMGMPTTAAYAVAASVVALV*SILALTRL-SPTSSCSTSRLCQLSPPVALASYAAAGISGDNAMGTSVASFKIGLAAFIVPFMFFYSPAMLMEGSAMQIARVAITASLGIILLAGVVQAWFFGPVKTWQRVIMVVGAMFMIYGGIYTDIAGLAIGVTIFLMQRKLYGSSANTAQAG 2128
            +KVGY  RSAGAIEAAASTGGQIMPPIMGAGAFIMAEVTGIPY +IAVAALIPA LYFLS+YCMVDFEAAKKGMRGMRK+EIPQFRRL K  YLFAPIIILIVALFMGYSVIRAGTLATASAAVVSW++P++MG++AILRALQLAG MSIQIIAVCACAGLIVGVI+LTGVGARFSSLLL LAGVSQLLALFFAMCISILLGMGMPTTAAYAVAASVVA     + +  L +       + +  ++PPVALASYAAAGISGDNAMGTSVASFKIGLAAFIVPFMFFYSPAMLMEGS MQI RV +TA+LGI+LLA VVQAWFFGPVK WQRV+M+VGA+FMIYGGIYTDIAGLAIG+ +F+MQR+LYG+   TA AG
Sbjct:  352 KKVGYPSRSAGAIEAAASTGGQIMPPIMGAGAFIMAEVTGIPYTDIAVAALIPAILYFLSIYCMVDFEAAKKGMRGMRKEEIPQFRRLVKQVYLFAPIIILIVALFMGYSVIRAGTLATASAAVVSWLTPHRMGVQAILRALQLAGAMSIQIIAVCACAGLIVGVIALTGVGARFSSLLLNLAGVSQLLALFFAMCISILLGMGMPTTAAYAVAASVVAPGLIEIGIQPLVAHFFVFYFAVVSAITPPVALASYAAAGISGDNAMGTSVASFKIGLAAFIVPFMFFYSPAMLMEGSGMQILRVGVTATLGIVLLAAVVQAWFFGPVKAWQRVVMLVGAIFMIYGGIYTDIAGLAIGIVLFVMQRRLYGNGKETATAG 728          
BLAST of mRNA_P-littoralis_Contig1103.15.1 vs. uniprot
Match: U7P9I5_9GAMM (C4-dicarboxylate ABC transporter permease n=8 Tax=Halomonas TaxID=2745 RepID=U7P9I5_9GAMM)

HSP 1 Score: 545 bits (1403), Expect = 6.020e-182
Identity = 310/377 (82.23%), Postives = 339/377 (89.92%), Query Frame = 2
Query: 1001 EKVGYSGRSAGAIEAAASTGGQIMPPIMGAGAFIMAEVTGIPYREIAVAALIPAALYFLSVYCMVDFEAAKKGMRGMRKDEIPQFRRLAKHAYLFAPIIILIVALFMGYSVIRAGTLATASAAVVSWISPNKMGIRAILRALQLAGTMSIQIIAVCACAGLIVGVISLTGVGARFSSLLLGLAGVSQLLALFFAMCISILLGMGMPTTAAYAVAASVVA--LV*SILALTRLSPTSSCSTSRLCQLSPPVALASYAAAGISGDNAMGTSVASFKIGLAAFIVPFMFFYSPAMLMEGSAMQIARVAITASLGIILLAGVVQAWFFGPVKTWQRVIMVVGAMFMIYGGIYTDIAGLAIGVTIFLMQRKLYGSSANTAQA 2125
            +KVGY  RSAGAIEAAASTGGQIMPPIMGAGAFIMAEVTGIPY EIAVAALIPA LYFLS+YCMVDFEAA+KGMRGMR++EIPQFRRL K  YLFAPIIILIVALFMGYSVIRAGTLATASAAVVSW+SP+KMG+RAIL+ALQLAGTMSIQIIAVCACAGLIVGVI+LTGVGARFSSLLLGLAGVSQLLALFFAMCISILLGMGMPTTAAYAVAASVVA  L+ SI     ++       + +  ++PPVALASYAAAGISGDNAMGTSVASFKIGLAAFIVPFMFFYSPAMLMEGS +QI RV ITA+LGI+LLA VVQAWFFGPVK WQR++M+VGA+FMIYGGIYTD+AGLAIG  +FLMQR+L+G     + A
Sbjct:  352 KKVGYPARSAGAIEAAASTGGQIMPPIMGAGAFIMAEVTGIPYTEIAVAALIPAILYFLSIYCMVDFEAARKGMRGMRREEIPQFRRLVKQVYLFAPIIILIVALFMGYSVIRAGTLATASAAVVSWLSPHKMGVRAILKALQLAGTMSIQIIAVCACAGLIVGVIALTGVGARFSSLLLGLAGVSQLLALFFAMCISILLGMGMPTTAAYAVAASVVAPGLI-SIGIEPLVAHFFVFYFAVVSAITPPVALASYAAAGISGDNAMGTSVASFKIGLAAFIVPFMFFYSPAMLMEGSWLQILRVGITATLGIVLLAAVVQAWFFGPVKAWQRLVMLVGALFMIYGGIYTDVAGLAIGAALFLMQRRLHGGGGGPSPA 727          
BLAST of mRNA_P-littoralis_Contig1103.15.1 vs. uniprot
Match: A0A3T1DHQ1_9GAMM (DctM domain-containing protein n=1 Tax=Halomonas olivaria TaxID=390919 RepID=A0A3T1DHQ1_9GAMM)

HSP 1 Score: 529 bits (1362), Expect = 1.280e-180
Identity = 304/377 (80.64%), Postives = 332/377 (88.06%), Query Frame = 2
Query: 1001 EKVGYSGRSAGAIEAAASTGGQIMPPIMGAGAFIMAEVTGIPYREIAVAALIPAALYFLSVYCMVDFEAAKKGMRGMRKDEIPQFRRLAKHAYLFAPIIILIVALFMGYSVIRAGTLATASAAVVSWISPNKMGIRAILRALQLAGTMSIQIIAVCACAGLIVGVISLTGVGARFSSLLLGLAGVSQLLALFFAMCISILLGMGMPTTAAYAVAASVVALV*SILALTRL-SPTSSCSTSRLCQLSPPVALASYAAAGISGDNAMGTSVASFKIGLAAFIVPFMFFYSPAMLMEGSAMQIARVAITASLGIILLAGVVQAWFFGPVKTWQRVIMVVGAMFMIYGGIYTDIAGLAIGVTIFLMQRKLYGSSANTAQAG 2128
            +KVGY  RSAGAIEAAASTGGQIMPPIMGAGAFIMAEVTGIPY EIA+AA+IPA LYF S+Y MVDFEAA+KGMRGMRKDEIP F +L K  YLFAPIIILIVALFMGYSVIRAGTLATASAAVVSW+SPNKMG RAIL+ALQ+AGTMSIQIIAVCACAGLIVGVISLTGVGARFSSLLLGLAGVSQLLAL FAM ISILLGMGMPTTAAYAVAASVVA     + +  L +       + +  ++PPVALASYAAAGISGDN MGTSVASFKIGLAAFIVPFMFFYSPAMLMEGSAMQI RV +TA+LGI+LL+G+VQAWFFGPV   QRV+M+VGAMF+IYGGIYTDI GLAIG+ +F+MQRKL+G    TAQAG
Sbjct:   24 KKVGYPARSAGAIEAAASTGGQIMPPIMGAGAFIMAEVTGIPYTEIALAAVIPAILYFASIYFMVDFEAARKGMRGMRKDEIPLFSKLVKQVYLFAPIIILIVALFMGYSVIRAGTLATASAAVVSWLSPNKMGFRAILKALQIAGTMSIQIIAVCACAGLIVGVISLTGVGARFSSLLLGLAGVSQLLALVFAMLISILLGMGMPTTAAYAVAASVVAPGLINIGIEPLIAHFFVFYFAVVSAITPPVALASYAAAGISGDNPMGTSVASFKIGLAAFIVPFMFFYSPAMLMEGSAMQILRVGVTATLGIVLLSGMVQAWFFGPVNALQRVLMLVGAMFLIYGGIYTDIIGLAIGIVLFVMQRKLHGGGNKTAQAG 400          
BLAST of mRNA_P-littoralis_Contig1103.15.1 vs. uniprot
Match: A0A511UUR7_9GAMM (DctM domain-containing protein n=4 Tax=Halomonadaceae TaxID=28256 RepID=A0A511UUR7_9GAMM)

HSP 1 Score: 538 bits (1386), Expect = 2.300e-179
Identity = 308/377 (81.70%), Postives = 333/377 (88.33%), Query Frame = 2
Query: 1001 EKVGYSGRSAGAIEAAASTGGQIMPPIMGAGAFIMAEVTGIPYREIAVAALIPAALYFLSVYCMVDFEAAKKGMRGMRKDEIPQFRRLAKHAYLFAPIIILIVALFMGYSVIRAGTLATASAAVVSWISPNKMGIRAILRALQLAGTMSIQIIAVCACAGLIVGVISLTGVGARFSSLLLGLAGVSQLLALFFAMCISILLGMGMPTTAAYAVAASVVALV*SILALTRL-SPTSSCSTSRLCQLSPPVALASYAAAGISGDNAMGTSVASFKIGLAAFIVPFMFFYSPAMLMEGSAMQIARVAITASLGIILLAGVVQAWFFGPVKTWQRVIMVVGAMFMIYGGIYTDIAGLAIGVTIFLMQRKLYGSSANTAQAG 2128
            +KVGY  RSAGAIEAAASTGGQIMPPIMGAGAFIMAEVTGIPY EIAVAA+IP+ LYF S+Y MVDFEAA+KGMRGMRKDEIP F +L K  YLFAPIIILI ALFMGYSVIRAGTLATASAAVVSW+SPNKMG RAILRALQLAGTMSIQIIAVCACAGLIVGVISLTGVGARFSSLLLGLAGVSQLLAL FAM ISILLGMGMPTTAAYAVAASVVA     + +  L +       + +  ++PPVALASYAAAGISGDN MGTSVASFKIGLAAFIVPFMFFYSPAMLMEGSAMQI RV +TA+LGIILL+G+VQAWFFGPVK WQRV+M+VGAMFMIYGGIYTD+ GLAIG+ +F+MQRKL+G    TAQAG
Sbjct:  357 KKVGYPARSAGAIEAAASTGGQIMPPIMGAGAFIMAEVTGIPYTEIAVAAIIPSILYFASIYFMVDFEAARKGMRGMRKDEIPLFSKLVKQVYLFAPIIILIAALFMGYSVIRAGTLATASAAVVSWLSPNKMGFRAILRALQLAGTMSIQIIAVCACAGLIVGVISLTGVGARFSSLLLGLAGVSQLLALVFAMLISILLGMGMPTTAAYAVAASVVAPGLINIGIEPLVAHFFVFYFAVVSAITPPVALASYAAAGISGDNPMGTSVASFKIGLAAFIVPFMFFYSPAMLMEGSAMQILRVGVTATLGIILLSGMVQAWFFGPVKAWQRVLMLVGAMFMIYGGIYTDVLGLAIGIVLFVMQRKLHGGGKQTAQAG 733          
BLAST of mRNA_P-littoralis_Contig1103.15.1 vs. uniprot
Match: A0A317N932_9GAMM (TRAP transporter 4TM/12TM fusion protein n=3 Tax=unclassified Halomonas TaxID=2609666 RepID=A0A317N932_9GAMM)

HSP 1 Score: 535 bits (1379), Expect = 2.430e-178
Identity = 308/374 (82.35%), Postives = 331/374 (88.50%), Query Frame = 2
Query: 1001 EKVGYSGRSAGAIEAAASTGGQIMPPIMGAGAFIMAEVTGIPYREIAVAALIPAALYFLSVYCMVDFEAAKKGMRGMRKDEIPQFRRLAKHAYLFAPIIILIVALFMGYSVIRAGTLATASAAVVSWISPNKMGIRAILRALQLAGTMSIQIIAVCACAGLIVGVISLTGVGARFSSLLLGLAGVSQLLALFFAMCISILLGMGMPTTAAYAVAASVVALV*SILALTRL-SPTSSCSTSRLCQLSPPVALASYAAAGISGDNAMGTSVASFKIGLAAFIVPFMFFYSPAMLMEGSAMQIARVAITASLGIILLAGVVQAWFFGPVKTWQRVIMVVGAMFMIYGGIYTDIAGLAIGVTIFLMQRKLYGSSANTA 2119
            +KVGY GRSAGAIEAAASTGGQIMPPIMGAGAFIMAE+TGIPY EIAVAALIPA LYFLSVYCMVDFEAA+KGMRGMRKDEIP F +L K  YLF PIIILI ALFMGYSVIRAGTLATASAAVVSWISPNKMGIR IL+AL+LAGTMSIQIIAVCACAG+IVGVISLTGVGARFSSLLLGLAGVSQLLAL FAM ISILLGMGMPTTAAYAVAASVVA     + +  L +       + +  ++PPVALASYAAAGISGDNAMGTSVASFKIGLAAFIVPFMFFYSPAMLMEG+  QI RV ITA+LGI+LLAGVVQAWFFGPVK WQR++M VGAMFMIYGGIYTD+AGLAIG  +F+MQRKL+GS A  A
Sbjct:  354 KKVGYPGRSAGAIEAAASTGGQIMPPIMGAGAFIMAEITGIPYTEIAVAALIPAILYFLSVYCMVDFEAARKGMRGMRKDEIPLFSKLVKQIYLFTPIIILIAALFMGYSVIRAGTLATASAAVVSWISPNKMGIREILKALRLAGTMSIQIIAVCACAGIIVGVISLTGVGARFSSLLLGLAGVSQLLALIFAMLISILLGMGMPTTAAYAVAASVVAPGLINIGIQPLVAHFFVFYFAVVSAITPPVALASYAAAGISGDNAMGTSVASFKIGLAAFIVPFMFFYSPAMLMEGTWPQILRVGITATLGIVLLAGVVQAWFFGPVKLWQRLVMFVGAMFMIYGGIYTDVAGLAIGAALFMMQRKLHGSGAPQA 727          
BLAST of mRNA_P-littoralis_Contig1103.15.1 vs. uniprot
Match: A0A8H9I630_9GAMM (DctM domain-containing protein n=13 Tax=Halomonas TaxID=2745 RepID=A0A8H9I630_9GAMM)

HSP 1 Score: 534 bits (1375), Expect = 1.030e-177
Identity = 301/369 (81.57%), Postives = 335/369 (90.79%), Query Frame = 2
Query: 1001 EKVGYSGRSAGAIEAAASTGGQIMPPIMGAGAFIMAEVTGIPYREIAVAALIPAALYFLSVYCMVDFEAAKKGMRGMRKDEIPQFRRLAKHAYLFAPIIILIVALFMGYSVIRAGTLATASAAVVSWISPNKMGIRAILRALQLAGTMSIQIIAVCACAGLIVGVISLTGVGARFSSLLLGLAGVSQLLALFFAMCISILLGMGMPTTAAYAVAASVVA--LV*SILALTRLSPTSSCSTSRLCQLSPPVALASYAAAGISGDNAMGTSVASFKIGLAAFIVPFMFFYSPAMLMEGSAMQIARVAITASLGIILLAGVVQAWFFGPVKTWQRVIMVVGAMFMIYGGIYTDIAGLAIGVTIFLMQRKLYG 2101
            +KVGY GRSAGAIEAAASTGGQIMPPIMGAGAFIMAE+TGIPYREIAVAALIPAALYFLSVY MVD EAAKKGMRGMRKDEIPQFR+LA+HAYLFAPIIILI ALFMGYSVIRAGTLATA+AAVVSWISPNKMGIR IL+ALQLAGTMSIQIIAVCACAGLIVGVISLTGVGARFSSLLLG+AGVSQLLALFFAMCISILLGMGMPTTAAYAVAASVVA  L+ +I     ++       + +  ++PPVALASYAAAGISGDNAM TS+ SFK+GLAAFIVPFMFFYSPAMLMEG+ +QI RVAITAS+GI +L+  VQAWFFG ++ WQR+++++GA+F+IYGGI+TDIAGL IGV +FLMQRKL+G
Sbjct:  358 KKVGYPGRSAGAIEAAASTGGQIMPPIMGAGAFIMAEITGIPYREIAVAALIPAALYFLSVYFMVDLEAAKKGMRGMRKDEIPQFRKLARHAYLFAPIIILIYALFMGYSVIRAGTLATAAAAVVSWISPNKMGIREILKALQLAGTMSIQIIAVCACAGLIVGVISLTGVGARFSSLLLGMAGVSQLLALFFAMCISILLGMGMPTTAAYAVAASVVAPGLI-NIGIQPLIAHFFVFYFAVMSAITPPVALASYAAAGISGDNAMQTSITSFKVGLAAFIVPFMFFYSPAMLMEGTPLQIVRVAITASIGIFMLSATVQAWFFGSIQVWQRLVLMIGALFLIYGGIFTDIAGLGIGVAMFLMQRKLHG 725          
BLAST of mRNA_P-littoralis_Contig1103.15.1 vs. uniprot
Match: A0A839VF72_9GAMM (TRAP transporter 4TM/12TM fusion protein n=1 Tax=Halomonas cerina TaxID=447424 RepID=A0A839VF72_9GAMM)

HSP 1 Score: 532 bits (1371), Expect = 3.630e-177
Identity = 302/377 (80.11%), Postives = 329/377 (87.27%), Query Frame = 2
Query: 1001 EKVGYSGRSAGAIEAAASTGGQIMPPIMGAGAFIMAEVTGIPYREIAVAALIPAALYFLSVYCMVDFEAAKKGMRGMRKDEIPQFRRLAKHAYLFAPIIILIVALFMGYSVIRAGTLATASAAVVSWISPNKMGIRAILRALQLAGTMSIQIIAVCACAGLIVGVISLTGVGARFSSLLLGLAGVSQLLALFFAMCISILLGMGMPTTAAYAVAASVVALV*SILALTRL-SPTSSCSTSRLCQLSPPVALASYAAAGISGDNAMGTSVASFKIGLAAFIVPFMFFYSPAMLMEGSAMQIARVAITASLGIILLAGVVQAWFFGPVKTWQRVIMVVGAMFMIYGGIYTDIAGLAIGVTIFLMQRKLYGSSANTAQAG 2128
            +KVGY GRSAGAIEAAASTGGQIMPPIMGAGAFIMAEVTGIPY EIAVAALIPA LYFLSVYCMVDFEAA+KGMRGM K+EIP+FRRL KH YLFAPIIILI ALFMGYSVIRAGTLATASAAVVSW SPNKMG+ AILRAL LAGTM+IQIIAVCACAGLIVGVI++TGVGARFSSLLLGLAGVSQLLALFFAMCISILLGMGMPTTAAYAVAASVVA     + +  L +       + +  ++PPVALASYAAAGISGDNAMGTSVASFK+GLAAFIVPFMFFYSPAMLMEGS MQI RV +TA+LGI+LLA  VQAWFFGPVK WQR++M+VGA+ MIYGGIYTD+ GLAIG  +F+MQR  +G       AG
Sbjct:  353 KKVGYPGRSAGAIEAAASTGGQIMPPIMGAGAFIMAEVTGIPYTEIAVAALIPAILYFLSVYCMVDFEAARKGMRGMPKEEIPKFRRLVKHVYLFAPIIILIAALFMGYSVIRAGTLATASAAVVSWFSPNKMGLLAILRALHLAGTMAIQIIAVCACAGLIVGVIAMTGVGARFSSLLLGLAGVSQLLALFFAMCISILLGMGMPTTAAYAVAASVVAPGLIEIGIQPLVAHFFVFYFAVVSAITPPVALASYAAAGISGDNAMGTSVASFKVGLAAFIVPFMFFYSPAMLMEGSWMQILRVGVTATLGIVLLAATVQAWFFGPVKAWQRLVMLVGALCMIYGGIYTDVVGLAIGAVLFMMQRGRHGGGGQPVSAG 729          
BLAST of mRNA_P-littoralis_Contig1103.15.1 vs. uniprot
Match: A0A7W5K5F4_9GAMM (TRAP transporter 4TM/12TM fusion protein n=1 Tax=Halomonas campaniensis TaxID=213554 RepID=A0A7W5K5F4_9GAMM)

HSP 1 Score: 531 bits (1368), Expect = 1.160e-176
Identity = 307/379 (81.00%), Postives = 333/379 (87.86%), Query Frame = 2
Query: 1001 EKVGYSGRSAGAIEAAASTGGQIMPPIMGAGAFIMAEVTGIPYREIAVAALIPAALYFLSVYCMVDFEAAKKGMRGMRKDEIPQFRRLAKHAYLFAPIIILIVALFMGYSVIRAGTLATASAAVVSWISPNKMGIRAILRALQLAGTMSIQIIAVCACAGLIVGVISLTGVGARFSSLLLGLAGVSQLLALFFAMCISILLGMGMPTTAAYAVAASVVALV*SILALTRL-SPTSSCSTSRLCQLSPPVALASYAAAGISGDNAMGTSVASFKIGLAAFIVPFMFFYSPAMLMEGSAMQIARVAITASLGIILLAGVVQAWFFGPVKTWQRVIMVVGAMFMIYGGIYTDIAGLAIGVTIFLMQRKLYGSSAN--TAQAG 2128
            +KVGY  +SAGAIEAAASTGGQIMPPIMGAGAFIMAE+TGIPY EIAVAALIPA LYFLSVYCMVDFEAA+KGMRGMRKDEIP F +L K  YLFAPIIILI ALFMGYSVIRAGTLATASAAVVSWISP+KMGIRAIL+ALQLAGTM+IQIIAVCACAGLIVGVISLTGVGARFSSLLLGLAG SQLLALFFAMCISILLGMGMPTTAAYAVAASVVA     + +  L +       + +  ++PPVALASYAAAGISG NAMGTSVASFKIGLAAFIVPFMFFYSPAMLMEGSA+QI RV +TA+LGI+LLA  VQAWFFGPVK WQR++M+VGA+FMIYGGIYTD+AGLAIGV +FLMQR L G      TA +G
Sbjct:  355 KKVGYPSKSAGAIEAAASTGGQIMPPIMGAGAFIMAEITGIPYTEIAVAALIPAILYFLSVYCMVDFEAARKGMRGMRKDEIPLFSKLVKQVYLFAPIIILIAALFMGYSVIRAGTLATASAAVVSWISPHKMGIRAILKALQLAGTMAIQIIAVCACAGLIVGVISLTGVGARFSSLLLGLAGFSQLLALFFAMCISILLGMGMPTTAAYAVAASVVAPGLINIGIQPLVAHFFVFYFAVVSAITPPVALASYAAAGISGANAMGTSVASFKIGLAAFIVPFMFFYSPAMLMEGSALQILRVGLTATLGIVLLAATVQAWFFGPVKAWQRLVMLVGAIFMIYGGIYTDVAGLAIGVLMFLMQRGLRGGGGTPRTATSG 733          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1103.15.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0F9VR03_9ZZZZ3.360e-19690.51DctM domain-containing protein n=2 Tax=root TaxID=... [more]
A0A556W295_HALSX1.220e-18483.55TRAP transporter permease n=1 Tax=Halomonas sp. Ta... [more]
A0A7X4G119_9GAMM1.210e-18382.23TRAP transporter fused permease subunit n=2 Tax=Ha... [more]
U7P9I5_9GAMM6.020e-18282.23C4-dicarboxylate ABC transporter permease n=8 Tax=... [more]
A0A3T1DHQ1_9GAMM1.280e-18080.64DctM domain-containing protein n=1 Tax=Halomonas o... [more]
A0A511UUR7_9GAMM2.300e-17981.70DctM domain-containing protein n=4 Tax=Halomonadac... [more]
A0A317N932_9GAMM2.430e-17882.35TRAP transporter 4TM/12TM fusion protein n=3 Tax=u... [more]
A0A8H9I630_9GAMM1.030e-17781.57DctM domain-containing protein n=13 Tax=Halomonas ... [more]
A0A839VF72_9GAMM3.630e-17780.11TRAP transporter 4TM/12TM fusion protein n=1 Tax=H... [more]
A0A7W5K5F4_9GAMM1.160e-17681.00TRAP transporter 4TM/12TM fusion protein n=1 Tax=H... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1103contigP-littoralis_Contig1103:62940..65067 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1397528.Q671_03985
PFAMsDctM
Model size2128
Max annot lvl135619|Oceanospirillales
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.05e-105
EggNOG OGsCOG4666@1|root,COG4666@2|Bacteria,1MUNB@1224|Proteobacteria,1RMH7@1236|Gammaproteobacteria,1XIBB@135619|Oceanospirillales
DescriptionC4-dicarboxylate ABC transporter permease
Cds size597
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789437.840402-UTR-P-littoralis_Contig1103:62939..640081680789437.840402-UTR-P-littoralis_Contig1103:62939..64008Pylaiella littoralis U1_48UTRP-littoralis_Contig1103 62940..64008 +
1680789437.8654466-UTR-P-littoralis_Contig1103:64605..650671680789437.8654466-UTR-P-littoralis_Contig1103:64605..65067Pylaiella littoralis U1_48UTRP-littoralis_Contig1103 64606..65067 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789437.851144-CDS-P-littoralis_Contig1103:64008..646051680789437.851144-CDS-P-littoralis_Contig1103:64008..64605Pylaiella littoralis U1_48CDSP-littoralis_Contig1103 64009..64605 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1103.15.1prot_P-littoralis_Contig1103.15.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1103 64009..64605 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1103.15.1

>prot_P-littoralis_Contig1103.15.1 ID=prot_P-littoralis_Contig1103.15.1|Name=mRNA_P-littoralis_Contig1103.15.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=199bp
MPPIMGAGAFIMAEVTGIPYREIAVAALIPAALYFLSVYCMVDFEAAKKG
MRGMRKDEIPQFRRLAKHAYLFAPIIILIVALFMGYSVIRAGTLATASAA
VVSWISPNKMGIRAILRALQLAGTMSIQIIAVCACAGLIVGVISLTGVGA
RFSSLLLGLAGVSQLLALFFAMCISILLGMGMPTTAAYAVAASVVALV*
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mRNA from alignment at P-littoralis_Contig1103:62940..65067+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1103.15.1 ID=mRNA_P-littoralis_Contig1103.15.1|Name=mRNA_P-littoralis_Contig1103.15.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2128bp|location=Sequence derived from alignment at P-littoralis_Contig1103:62940..65067+ (Pylaiella littoralis U1_48)
GCAGAGATTTTGGCTGAAGGTGTTGATGAAGAAATTGTCGAACCCAACCG CCGTATTTTTACCGGATGGCAGTGGGCGCTATTTGCTAGCCTAGCCATTA TTTATGCTGTGTTCCATTTGGTGACGTTAAATGTCCTGCCAATGGAAACA CGGTCATACCGTATTATTCACATTGCTGGTGCTCTTATTCTTGGTTTCGG TTTGTTTACCGGCGCCCGCTTTGCTAGTGATGACGCAGCTACCGCACCTA TGTGGCAAACAGTACTGAGTTCCCTCTTCTTGCTGCTTGCTGGCTATGCG TTACTGCAAACGGTCTTAATGTGGCAAACCATCGCTGGTGGGGCGATGCG TATCGAGCCGCACATTGAAGCATGGCACTTTGGTTATCCACTGATTGCTG CGACCGTCGCCTCCATTGGGCTTTCATGGATCTATCGCCAAGTGCGGGCT AAGTTTGCCTTACCTGATTTAGTACTAATGGTCTGTGCCTAGCAAGTGCG GGCTACTTCCTGGTGATTTATAACACGCCGCTGCGGATGTCGACCGGTAC TTCCTTTGCTCCGATGGGTATTTCCTACGCGGCTATTGCAGGCTCGCTGC TAATACTTGAGCTTACTCGTCGTGTGGCTGGCAATGCCCTGGTGATTATT TCGGCGATTTTCCTTGCCTATGTATTTGGTGGGCCTTACCTGCCCGGTTT CTTAAGCTACCCCGGTCTCTCTGTAGGGCGCTTTTTCAGTCAGGTTTACA CCGATACCGGCGTACTCGGCCAAACCACCGCCGTATCATCTACATACATT ATTTTGTTCATTATTTTTGCCGCTTTCCTGCAAGCCTCCAAGGTGGGCGA CTACTTTGTAAACTTCGCTTTCGCCGCCGCTGGACGTGCACGTGGTGGCC CAGCGAAGGTGTCTATTTTTGCCTCTGGCCTGATGGGCATGATCAATGGC ACCTCAGCGGGCAACGTTGTTTCTACTGGCTCATTGACGATTCCGTTGAT GAAAAAGTTGGTTATTCCGGTCGTAGTGCCGGTGCGATTGAAGCCGCGGC GTCGACCGGTGGACAGATTATGCCGCCGATCATGGGCGCAGGCGCCTTTA TCATGGCGGAAGTGACCGGCATCCCTTACCGCGAGATTGCTGTTGCTGCC CTTATCCCAGCGGCACTCTACTTCCTTTCGGTCTATTGTATGGTCGATTT TGAAGCCGCCAAGAAAGGCATGCGCGGAATGCGCAAAGATGAAATCCCAC AATTCCGGCGTCTTGCCAAGCATGCCTACCTCTTCGCCCCCATTATTATT TTGATTGTGGCGTTATTTATGGGCTACTCGGTGATTCGTGCGGGCACGCT AGCCACCGCTTCGGCAGCCGTTGTAAGTTGGATTTCGCCGAACAAGATGG GGATACGCGCTATTTTAAGAGCGCTGCAATTAGCGGGCACCATGTCGATT CAGATTATCGCGGTGTGCGCCTGTGCGGGCTTGATTGTAGGGGTGATCTC GCTGACTGGCGTGGGCGCGCGCTTCTCGTCACTACTGCTGGGCTTAGCGG GCGTAAGCCAGCTGCTGGCGTTGTTCTTCGCAATGTGTATCTCTATTCTG CTCGGTATGGGCATGCCCACAACAGCCGCTTATGCGGTAGCTGCATCGGT GGTCGCGCTGGTTTAATCAATATTGGCATTGACCCGCTTGTCGCCCACTT CTTCGTGTTCTACTTCGCGGTTATGTCAGCTATCACCCCCAGTGGCGCTG GCCTCCTATGCTGCAGCGGGCATTTCTGGGGACAACGCAATGGGCACGTC GGTTGCCTCGTTCAAGATTGGCTTGGCTGCCTTTATCGTACCGTTCATGT TCTTCTACAGCCCGGCAATGCTGATGGAGGGCAGTGCAATGCAAATTGCT CGCGTGGCGATCACGGCTTCACTGGGTATCATTTTGCTCGCGGGTGTCGT CCAGGCGTGGTTCTTTGGACCTGTCAAAACATGGCAACGCGTGATCATGG TGGTGGGCGCTATGTTCATGATTTATGGAGGCATATACACCGACATTGCA GGTCTTGCGATAGGTGTCACGATATTTCTTATGCAGCGTAAATTGTATGG GAGTAGCGCTAACACCGCCCAAGCGGGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1103:62940..65067+

>mRNA_P-littoralis_Contig1103.15.1 ID=mRNA_P-littoralis_Contig1103.15.1|Name=mRNA_P-littoralis_Contig1103.15.1|organism=Pylaiella littoralis U1_48|type=CDS|length=597bp|location=Sequence derived from alignment at P-littoralis_Contig1103:62940..65067+ (Pylaiella littoralis U1_48)
ATGCCGCCGATCATGGGCGCAGGCGCCTTTATCATGGCGGAAGTGACCGG
CATCCCTTACCGCGAGATTGCTGTTGCTGCCCTTATCCCAGCGGCACTCT
ACTTCCTTTCGGTCTATTGTATGGTCGATTTTGAAGCCGCCAAGAAAGGC
ATGCGCGGAATGCGCAAAGATGAAATCCCACAATTCCGGCGTCTTGCCAA
GCATGCCTACCTCTTCGCCCCCATTATTATTTTGATTGTGGCGTTATTTA
TGGGCTACTCGGTGATTCGTGCGGGCACGCTAGCCACCGCTTCGGCAGCC
GTTGTAAGTTGGATTTCGCCGAACAAGATGGGGATACGCGCTATTTTAAG
AGCGCTGCAATTAGCGGGCACCATGTCGATTCAGATTATCGCGGTGTGCG
CCTGTGCGGGCTTGATTGTAGGGGTGATCTCGCTGACTGGCGTGGGCGCG
CGCTTCTCGTCACTACTGCTGGGCTTAGCGGGCGTAAGCCAGCTGCTGGC
GTTGTTCTTCGCAATGTGTATCTCTATTCTGCTCGGTATGGGCATGCCCA
CAACAGCCGCTTATGCGGTAGCTGCATCGGTGGTCGCGCTGGTTTAA
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