mRNA_P-littoralis_Contig1102.9.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1102.9.1
Unique NamemRNA_P-littoralis_Contig1102.9.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1102.9.1 vs. uniprot
Match: A0A6H5K9K2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9K2_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 5.330e-10
Identity = 34/58 (58.62%), Postives = 45/58 (77.59%), Query Frame = 1 
Query:    1 GNGRVDVVGSGSVGEISNVRVSQDSSAGGESLEWTDALPLEDAEVSKLLQEVALGVGK 174
            GNG V+V G G  G+ISNV V++ S+ GGE LEW DA+PLE+A +SKLLQE+A+  G+
Sbjct:  370 GNGPVNVAGDGGDGKISNVWVNRVSATGGEGLEWIDAVPLEEAVMSKLLQELAVEDGE 427
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1102.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K9K2_9PHAE5.330e-1058.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1102contigP-littoralis_Contig1102:20006..20190 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size185
Hectar predicted targeting categoryother localisation
Exons1
Cds size183
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789436.878788-CDS-P-littoralis_Contig1102:20007..201901680789436.878788-CDS-P-littoralis_Contig1102:20007..20190Pylaiella littoralis U1_48CDSP-littoralis_Contig1102 20008..20190 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1102.9.1prot_P-littoralis_Contig1102.9.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1102 20008..20190 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1102.9.1

>prot_P-littoralis_Contig1102.9.1 ID=prot_P-littoralis_Contig1102.9.1|Name=mRNA_P-littoralis_Contig1102.9.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=61bp
GNGRVDVVGSGSVGEISNVRVSQDSSAGGESLEWTDALPLEDAEVSKLLQ
EVALGVGKMTR
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mRNA from alignment at P-littoralis_Contig1102:20006..20190-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1102.9.1 ID=mRNA_P-littoralis_Contig1102.9.1|Name=mRNA_P-littoralis_Contig1102.9.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=185bp|location=Sequence derived from alignment at P-littoralis_Contig1102:20006..20190- (Pylaiella littoralis U1_48)
GGAAACGGGCGAGTCGATGTGGTGGGGAGCGGCAGTGTTGGCGAAATTTC
GAACGTCAGGGTTAGCCAGGACTCGTCGGCGGGCGGCGAAAGTCTTGAAT
GGACCGATGCCTTGCCGTTAGAGGATGCCGAGGTGTCGAAGCTGCTGCAA
GAAGTGGCTCTGGGGGTGGGGAAGATGACGCGTCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1102:20006..20190-

>mRNA_P-littoralis_Contig1102.9.1 ID=mRNA_P-littoralis_Contig1102.9.1|Name=mRNA_P-littoralis_Contig1102.9.1|organism=Pylaiella littoralis U1_48|type=CDS|length=183bp|location=Sequence derived from alignment at P-littoralis_Contig1102:20006..20190- (Pylaiella littoralis U1_48)
GGAAACGGGCGAGTCGATGTGGTGGGGAGCGGCAGTGTTGGCGAAATTTC
GAACGTCAGGGTTAGCCAGGACTCGTCGGCGGGCGGCGAAAGTCTTGAAT
GGACCGATGCCTTGCCGTTAGAGGATGCCGAGGTGTCGAAGCTGCTGCAA
GAAGTGGCTCTGGGGGTGGGGAAGATGACGCGT
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