mRNA_P-littoralis_Contig1102.6.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1102.6.1
Unique NamemRNA_P-littoralis_Contig1102.6.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1102.6.1 vs. uniprot
Match: A0A6H5KEF8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEF8_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 9.930e-13
Identity = 31/37 (83.78%), Postives = 32/37 (86.49%), Query Frame = 3 
Query:    3 EDSDSAATPASIAFEHFGFLGWTWRDKHMGSKLPLCL 113
            EDSDSAATPASIA EHFG+LGW WR  H GSKLPLCL
Sbjct:  113 EDSDSAATPASIAEEHFGYLGWKWRGNHFGSKLPLCL 149
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BLAST of mRNA_P-littoralis_Contig1102.6.1 vs. uniprot
Match: A0A6H5KVF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF4_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 1.100e-12
Identity = 31/37 (83.78%), Postives = 32/37 (86.49%), Query Frame = 3 
Query:    3 EDSDSAATPASIAFEHFGFLGWTWRDKHMGSKLPLCL 113
            EDSDSAATPASIA EHFG+LGW WR  H GSKLPLCL
Sbjct:   98 EDSDSAATPASIAEEHFGYLGWKWRGNHFGSKLPLCL 134
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BLAST of mRNA_P-littoralis_Contig1102.6.1 vs. uniprot
Match: D7G2I2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2I2_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 1.740e-11
Identity = 30/37 (81.08%), Postives = 31/37 (83.78%), Query Frame = 3 
Query:    3 EDSDSAATPASIAFEHFGFLGWTWRDKHMGSKLPLCL 113
            EDSDS ATPASIA EHFG+LGW WR KH  SKLPLCL
Sbjct:   42 EDSDSEATPASIAEEHFGYLGWKWRGKHFCSKLPLCL 78
[Close]
BLAST of mRNA_P-littoralis_Contig1102.6.1 vs. uniprot
Match: A0A6H5K6I9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6I9_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 5.240e-11
Identity = 29/37 (78.38%), Postives = 30/37 (81.08%), Query Frame = 3 
Query:    3 EDSDSAATPASIAFEHFGFLGWTWRDKHMGSKLPLCL 113
            EDS  A TPASIA EHFG+LGW WR KH GSKLPLCL
Sbjct:   36 EDSGFAITPASIAKEHFGYLGWKWRGKHFGSKLPLCL 72
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1102.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KEF8_9PHAE9.930e-1383.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVF4_9PHAE1.100e-1283.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2I2_ECTSI1.740e-1181.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K6I9_9PHAE5.240e-1178.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1102contigP-littoralis_Contig1102:17542..17848 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size308
Hectar predicted targeting categorysignal anchor
Exons1
Cds size306
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789436.85017-CDS-P-littoralis_Contig1102:17541..178471680789436.85017-CDS-P-littoralis_Contig1102:17541..17847Pylaiella littoralis U1_48CDSP-littoralis_Contig1102 17542..17847 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1102.6.1prot_P-littoralis_Contig1102.6.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1102 17542..17847 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1102.6.1

>prot_P-littoralis_Contig1102.6.1 ID=prot_P-littoralis_Contig1102.6.1|Name=mRNA_P-littoralis_Contig1102.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=102bp
WRTPTAPQPLRPSPSNTSGFWDGPGGISIWARSCLYVLNIYVFLVILCLR
VTQPGTFASGRRQIVPSPTRYLVSNLCRIVAACTLNPPPSPPPIPPQDIL
EH
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mRNA from alignment at P-littoralis_Contig1102:17542..17848+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1102.6.1 ID=mRNA_P-littoralis_Contig1102.6.1|Name=mRNA_P-littoralis_Contig1102.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=307bp|location=Sequence derived from alignment at P-littoralis_Contig1102:17542..17848+ (Pylaiella littoralis U1_48)
TGGAGGACTCCGACAGCGCCGCAACCCCTGCGTCCATCGCCTTCGAACAC
TTCGGGTTTTTGGGATGGACCTGGAGGGATAAGCATATGGGCTCGAAGCT
GCCTCTATGTCTTGAATATATATGTTTTTTTGGTAATATTGTGCCTCCGC
GTGACACAGCCTGGGACGTTTGCTAGCGGAAGGCGCCAAATCGTCCCTTC
TCCGACACGATACTTAGTATCTAATCTATGCCGTATTGTTGCCGCCTGCA
CACTAAACCCACCGCCATCCCCCCCACCCATACCGCCACAGGACATTCTC
GAACACC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1102:17542..17848+

>mRNA_P-littoralis_Contig1102.6.1 ID=mRNA_P-littoralis_Contig1102.6.1|Name=mRNA_P-littoralis_Contig1102.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=306bp|location=Sequence derived from alignment at P-littoralis_Contig1102:17542..17848+ (Pylaiella littoralis U1_48)
TGGAGGACTCCGACAGCGCCGCAACCCCTGCGTCCATCGCCTTCGAACAC
TTCGGGTTTTTGGGATGGACCTGGAGGGATAAGCATATGGGCTCGAAGCT
GCCTCTATGTCTTGAATATATATGTTTTTTTGGTAATATTGTGCCTCCGC
GTGACACAGCCTGGGACGTTTGCTAGCGGAAGGCGCCAAATCGTCCCTTC
TCCGACACGATACTTAGTATCTAATCTATGCCGTATTGTTGCCGCCTGCA
CACTAAACCCACCGCCATCCCCCCCACCCATACCGCCACAGGACATTCTC
GAACAC
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