prot_P-littoralis_Contig110.81.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig110.81.1
Unique Nameprot_P-littoralis_Contig110.81.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length118
Homology
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BLAST of mRNA_P-littoralis_Contig110.81.1 vs. uniprot
Match: A0A6H5J7A0_9PHAE (DUF1713 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J7A0_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 4.390e-28
Identity = 66/112 (58.93%), Postives = 75/112 (66.96%), Query Frame = 0 
Query:    5 GSYLPLKVSEVLQGLKQATTGLLQPSAFPASIPGPLLFAFPGVSQSASLPQSREHGEGMEEGAWEELR--DGLEGLFEGGLWATSVKRKRVTKMRKHKXXXXXXXERQSASR 114
            GS LP+KV E +QGLKQAT GLLQ  A P ++ G   F  PGV + A LPQS EH +G EE   EE    D + GL EGG+WATSVKRKRVTKMRKHK       +RQSASR
Sbjct:   82 GSSLPIKVYEAVQGLKQATAGLLQHWASPLALSGAFPFVLPGVGRPALLPQSPEHDQGCEEDEDEEEEGVDLIGGLSEGGVWATSVKRKRVTKMRKHKWRKRRKLQRQSASR 193
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig110.81.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5J7A0_9PHAE4.390e-2858.93DUF1713 domain-containing protein n=2 Tax=Ectocarp... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013177Mitochondrial mRNA-processing protein COX24, C-terminalSMARTSM01155DUF1713_2coord: 84..117
e-value: 2.3E-4
score: 30.5
IPR013177Mitochondrial mRNA-processing protein COX24, C-terminalPFAMPF08213DUF1713coord: 85..110
e-value: 1.1E-6
score: 28.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 94..110
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 94..117

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig110contigP-littoralis_Contig110:387901..395702 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig110.81.1mRNA_P-littoralis_Contig110.81.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig110 387901..396298 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig110.81.1 ID=prot_P-littoralis_Contig110.81.1|Name=mRNA_P-littoralis_Contig110.81.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=118bp
MGKHGSYLPLKVSEVLQGLKQATTGLLQPSAFPASIPGPLLFAFPGVSQS
ASLPQSREHGEGMEEGAWEELRDGLEGLFEGGLWATSVKRKRVTKMRKHK
WRKRRKAERQSASRRAN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013177COX24_C