mRNA_P-littoralis_Contig110.81.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig110.81.1
Unique NamemRNA_P-littoralis_Contig110.81.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig110.81.1 vs. uniprot
Match: A0A6H5J7A0_9PHAE (DUF1713 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J7A0_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 2.910e-23
Identity = 59/97 (60.82%), Postives = 67/97 (69.07%), Query Frame = 1
Query:   13 GSYLPLKVSEVLQGLKQATTGLLQPSAFPASIPGPLLFAFPGVSQSASLPQSREHGEGMEEGAWEELR--DGLEGLFEGGLWATSVKRKRVTKMRKH 297
            GS LP+KV E +QGLKQAT GLLQ  A P ++ G   F  PGV + A LPQS EH +G EE   EE    D + GL EGG+WATSVKRKRVTKMRKH
Sbjct:   82 GSSLPIKVYEAVQGLKQATAGLLQHWASPLALSGAFPFVLPGVGRPALLPQSPEHDQGCEEDEDEEEEGVDLIGGLSEGGVWATSVKRKRVTKMRKH 178          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig110.81.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5J7A0_9PHAE2.910e-2360.82DUF1713 domain-containing protein n=2 Tax=Ectocarp... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig110contigP-littoralis_Contig110:387901..396298 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size950
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionDomain of unknown function DUF1713, mitochondria
Ec32 orthologEc-05_002590.1
Cds size354
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789435.0961514-CDS-P-littoralis_Contig110:387900..3879521680789435.0961514-CDS-P-littoralis_Contig110:387900..387952Pylaiella littoralis U1_48CDSP-littoralis_Contig110 387901..387952 +
1680789435.1069584-CDS-P-littoralis_Contig110:395400..3957021680789435.1069584-CDS-P-littoralis_Contig110:395400..395702Pylaiella littoralis U1_48CDSP-littoralis_Contig110 395401..395702 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789435.1179326-UTR-P-littoralis_Contig110:395702..3962981680789435.1179326-UTR-P-littoralis_Contig110:395702..396298Pylaiella littoralis U1_48UTRP-littoralis_Contig110 395703..396298 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig110.81.1prot_P-littoralis_Contig110.81.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig110 387901..395702 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig110.81.1

>prot_P-littoralis_Contig110.81.1 ID=prot_P-littoralis_Contig110.81.1|Name=mRNA_P-littoralis_Contig110.81.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=118bp
MGKHGSYLPLKVSEVLQGLKQATTGLLQPSAFPASIPGPLLFAFPGVSQS
ASLPQSREHGEGMEEGAWEELRDGLEGLFEGGLWATSVKRKRVTKMRKHK
WRKRRKAERQSASRRAN*
back to top

mRNA from alignment at P-littoralis_Contig110:387901..396298+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig110.81.1 ID=mRNA_P-littoralis_Contig110.81.1|Name=mRNA_P-littoralis_Contig110.81.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=8398bp|location=Sequence derived from alignment at P-littoralis_Contig110:387901..396298+ (Pylaiella littoralis U1_48)
ATGGGGAAGCATGGGTCATACTTGCCGCTGAAAGTTTCAGAGGTTTTGCA AGGTGCGATATTCTCTAGGTAGTTATATCTGTCTGTCTGTCTGTCTGTCC TGTCTCTGTGTCCCTCTGTCTTCCCTCTCAATACTACGAAGTACTTCTTT TACAGCAGCAGCACTTCGAAGTATACCATGTTTCACCTCCACAACCGCTC TCCTGCAACGCTAACGCCAACGCGAAGGCGTCGCTTACCCCATGGGAAGA GCGGGTGTGTAGTGCCTGCAAGAGGGCGTCAGCAAGACCCTTTGCGTATG CAATCAAGCGCCGCTGAGTACTTCCTGTCTTACAAGATACCACAGGAAAG GTTCACTCACCGTGTATTTTTATTTGTTGGCAACTTTGCCCGAGCCAGAT GTACTGCTGTACCGAACGGAGGATGTAATCCCTTCACGAAACAGGAGCGA AAGAGGAAGTCACAGGGGGTATGTTTTGTGTATCCTGCGAGACCTCTTCC CGAGAGGCTCACATTGCCGTACGACACACCATTTTTTATACGGCACGAGT TTGTGCCGGCTCCCACCACGGTACTCCTGTGCCGATGGCGTTACCAGTTC GCTGTGCTTCCATGCCTTGTGATGCAGGGACGGATACCTTTTACTGTTTT ATTCTTACACATATGATGGGCTATGCCAGTAAGCGCGGATAAGCGTAGGT TGGTCCAAGACATTCGCATCCAGTGCAGCCAGCGATGCCGGGTCATCGAA GAAAGCTCGGCAGCGGGTAGTACTTTTCATTTTTCGCCGTTTGATTTGAG AATAACTACCCTGTTGTACAAGCAAAATTTGAAATTAGCTGAACACCCAC CGGTCGCCCCGGTGGTTCAGTTGGGAACTCACGAAACCTTCTGACATTCA CGCGTGAGTTCGAATCCCAGTGCAGTAACACGATCTGGGTTCTCTTCTCA CAATGCGCGTGCAAGTGGAAAGCGATTAATTGGTGAGTAATCAAAATCCG ATCTTACCATCGACGAGGGAAGGGGATCGCTGTCCCCTTTCTCGCGATAA AAACTCAACCGAAACAAGGCAAGCACCGCAGAGGGAAGTGGAGAAAAAAA AAAACTCATGTGTTGACTTCCCCGTGCTGTGTGACCCCAGTTGGAGCGTC GACCTACCCGAAAGGTGTAGAGTGGCGTCCAATTAAAGGGATGGCAACAC ACCCACCCACCGTCAGAGTATTATATGATACGGTGATGACATCCCCACAC TGCGGTCCCTTCATCAGCGCCAACAGCATCCAAGTCGCCGGGCGCCAGCT CCCCGTCCATCTCCCCCTCTTCGTAGAACCCGTCCCAACAAATCAAGAGG AAAAAATGTAATTTAAAACGTTCCTTTTGGGGACTCGATGCCCCAAGGTC GTTGCTGAGTAATCAGCTATGATGCAGTAAAGCAGTCCGGAGTACCGTGT ACAGTACGCGACACATGTTAAGAAACTCATAGATAAGAAATCCAGCCTGA GATTTTTTTTTAATTTACTGTACTGTAAGCATTTACAGGTAAACATTTGT GCTCAGTCTAGTTATCCTACACTAAAACCTTTAGTGGCAGTTGGGTTACG CCCACAGAAGAAATACGCCGCGAGCCTCAGCCAAAATAGGAGTTCCTTAA CATCCCCACACTCCGGTACTTGTACTCTGTACCCCCCCCTCCCCCCCCTC CCCCCCCGCCCAAAAGAGATGGGAGTTTTTGACGTATGGAGCTCCGCAGA ACTCCTCTTTCGTGACATTACAGTACTGTACTTGAAAAACCATATATCAG GCTTTCGCGGACGTCGGTAACGTGACACTTGTCATTTTTACTTGAAAACT CTTTGTGAAGAAAGATAGAGGCGCTTCGAAGGGGTGGAAAGGGGGACAAA ATCATGTCACGCGACCGACAGCATAACAGCAGGGTGGTCGCAAACTCAAA CAGCATAGCTCACACTGCACGATGCAGTTACTCGTGTACGTCCGGCACAC GCAGCCTCCTCAGGCCCTGTGTTAACGAAAGTCGGAATATAATTATTGAA ATCACAATCATAGTATGATTTTCCGAAAAACCCTTCGAGTCATATTAACG GAAGAGCTGACAAGGCTGTTTGAAGGCCTGTAAACGCCAGCAGAATGCAA ACCTCTGATGATGACGACACGACGGGTAAAACGGAACAATAAAGTATACT GCTGTACAAAGTACTCCGTACAGCAGTACAGCAGTACTTCGACGCATCAT AGGCGTCCTCTCGCATGCAAGGCAAGGTCGTGGGCTCTGTGCACCAAGCG TTGATGCTGACAGACACCCCGTTTGTAGACGTGTGGCGTGTGTGTGTATG TGTGTTGGCTCATGCACTCAAGACTGCTGTTGTGTCAGTGTCATGTGTGA GAGGCAGCTTCGTGCTCGTGACCTGTGACCTGCCTGTCTGCGTCATGTGT GCTGATGGTGTGTTGTGCAAAATGAAATGTGGGTCGTCATCATCAATCAT GCAAACTGGTGTGTTTGTTTGTTGCGCTGTCATGTGTGGTGCTAACGTTG GCTTGCCTGGTGCAACGGCAACCCTCTATGCTATGTTCTGTGGCACTGCT GTTGGTTGCCTCGGTAGTATTTGGTCTGGCCAGCCTGTTGCGCGAGGCAC ATCATTCAGAAAAAAGCATTCGATCGGGTTGAGACCTCCACTAATGATTA ATGATTTTCTGCCAATGAAGTCTTTTTGGACTTCTTTGGTCTCGAAGGGT TTTTCGGAAAATCATTGGCTTCGTCGGAAGGTAATAAAAGCTTGGCCAAT CAGAGACCTTCTATCATATGATAATGATTTATTCCAATAATGATTTTCCG ACTATCGTTAATACAGGGCCTCAGGCAACTGCAGACTCAAACCTAACCCC CACCCATATCGAGAGGCGATTGGTGCAGTGGAGGAATCCAGCGCTCGTTA GGGTTTATCTTGCCGAGACCAAATTTACGATTTTGATTATTGATTATTGA TTTTGATTATGACGATTCGCACGCTCAAAATCAACGGAATCTACCTGGCC ATCTTAGCGACGACGCAACACAGAGGCGAGATTGATTTTGATTTTGGAAA CCGCACTCGAACAGACCAACACGGAGTAATACCGGGGTGATTATTACTCC ACGAACAGCAGTCTGTGTCAGACAACAACAGAGGAGGGTATCGCGCTGGT TGGTGCTGCTGCCATTCTCGCCCCAGCACCAACCATGTCTGTACCTTCAT GGATGGGATCGCTGACGGGCTGGGGCGGCATCACGAGCAACCAGCTGTAC AGCAGCAGCAGCAGCAGTGAGGCTGCTGGATTCTATTACATGTATTACGA ACGATACACGAAGTGTATTTTTCCTCTGAAGTACTGCTGTGCTACGTTTT CTTCTCGTTGCTGCTGCTTGCTGCTGTTACTGCGGCGTTGCTTGAATGAT GAACTGACGGACTATCGGCGTAGACATTGGGCGACATGCCAGACTGCTGG GAAACTCTATCCGTTCTACTCGCCGGTTTGTCCATGTTTCCTCTGTCGGT CAAGCCCCAGAGCAGAGAGAGGAGGTAGTTTGAAAGCGTATCTTTCTGAT CTACTGCGATTTTTCTGCCTCTCTTGACTTTTTAGTTACTTGGCGTATTA AATGTACTTGTATGTACCATCATACGTCAATACAAACTACCAGGTATACG CCAAGTAATAAAAATTCAACAGACGGAAGTGGCCCGCAGTGCCGAACGGT CTTCGAAGCAGCCCGTTCGCCTGAACTCAAAAAAATGAAATGAAAAATTA TTTCATTTTCTTGAGTTTGATTTCACCAACATGAGATAGTTATAAAAAAT ACGAAGTAAATAGCTAAACCAACCAGAGGAAAGAAAAGAAAAAAAACAGA GCGAACCGTCATAATCAAAATCAAAATCAATAATCAAAACCAAGAACTTG GTGTCGATAAGATAAGCCTCTAGCAGCAGCAGCAGCACAGCAGCAGTAGT AGCACAGCAACAGCAGCAGCACTATCAGCAGCATAGGCCCAAGTAGTCAT AGAGGACGGACGAGCGAGAGAAGTAACACCACCACCACTCCCACCAGCAG TAGCACCAGCAACAACAGCAGCTCCCACTTTTTTCTTCCTCTGCTTTACT CCACGCACCTAAAAACTCTTCGTGTTTCTTGCCGTTGGGTGTGGCGTCCT CGCGATCTTACAAAAACATAGAAATCAGGGCTGTGTGATGATGATGATAC TTATTTCAACCCCGTTCAATGAATGATACCGACGAAATAGGCGTATGGTA ATAAACGAAACCCCACTCTTGGCGCATCTACTGAGAAAAACGGCATGTGA CTCGCTGTCGGAGTTGTGAAGTCATGGTGTTTGAACAAGTGAAGCGAAAT AGGAAAGAGGAAAGAGAAAGGAACAAAGGGGCCCCAAGTGTACTCGAACT TTCTTTCTCTGTTGTTTCTTTTTTTTCCAGCACCGCAGGTCAAAAATCGC CGGCCCGGGTCAAAGCTTTGGTCCCCGTACAGTGCCGGTATGTGCCACGA AAACCACGTCATTATAGCGGGCACCGACTTTACTGGTGAAGATTCTTCCA TATTGCGTTGAGTTTAATCATGCATTACCACAGGCAAGCTGCGGAGAAGA TACACCAGGTACTATTATTACTGCTGTTGAAGCCGTATGTATACTTGTTT GGTGTGGGGATATCATATAGTGGGTAACACTGGGAGAGGCCTCTGAAGCC TGTACTGCTCAAGCGCGATGTAGCCTGCAGACTCTGAAGCTACATAGCGC TTGAGCAGTACAGCAGGCGGGCGTGGAATATGAACAGCAGCTCAGTTGTT GTTAATGTTGATTCTCACATTAGCTCACCACTAAAGTCTAGCCCGTGGTC ACAAACCAGGCACAAATCGTGCAAGCAGAAAAATATATATATATAGAAAT GCGAAGTAAACAATAAACGATGGCCACACCCAAACAAAATCAGAGGAAGT ACCGTTGGGGTACCTCCTGATATGGTGGCCAGAGTTCAAAATTCAGAAAT AATGCCCAAAAAAACAAAAATTGAAAACAAAGCCAAGGCAACCCATACAG CAGCTAACCAGCCAGAGCTCAGAGCCCAGACCGACCAAGGCACTCCAGAG CGCAGAGCTCAGTACGGACTAAAAAAATAAGGCACACCAAGAACAAGAAA AGACACCGAAAGCCGCAAGGTGAAAGGCGGGAGCCAGAAGACGAAGGACT AAAAAGGAGGACAAAGAATGAGGGAGTTCAGTATCGTCCAGTAACTTGAG CGAATAGAGTAATGCATGGACAGACACAAACAAGCTGAACGTGCTGGATG TATACACCAGTGCAATGAGTATATCGTTGTGCACCATGGCGGCTGTTTGC CAAATACTTTCTTCACTTTGTAGAACCTGACAGTGTTGTGTTCACATATA CGAAGTCATATACTTTTTTCACATTTACCCCAGTGAGCCTCCACTCTCAC ATACAATCTGCAGTTGTTTCATGAAAACGATTCCCGCATCATTAACTCAA AAAACACAACCAACCTACCGATAGAGACAAGGTCGACGCAGAATTGTGGC AACGTGGCAACACAGACGTCAACGGCAAAAACGAAGAGGCAGAAAAGATT CGACCAACATTAAGCTTCATTTCTGATTTTGCTGGCACACGTATCACCTA GTCAAAACCACTTGCCAAGTAGGGTGTGGGTGTCATGCGCTGCTCTGGTA TGTGCGCGTGTGAGCTCCGAGAAAAACCGGCTTATTGTTGTGCACCGAAT TGCCTCTGCCGGCACTTTAGCAGCACTGGCCGCCACAGCAGTGCCGGTGT GGTCTTCTGGCGTGTCCCAGCTGATCCAAGCAATTAAGCGGGGATCTTAT CGGCCGGCGGCAATATTCAACCGGCTTTGTACAGGGCCCGCAACATGTAT GTCAACACTAATTCGAAGTTTACTTGACCTTATAAAACAGGAGACAAAAA AAAGTGTTGAACACCCGTCTGCTGTCACGCGGCACAGCTTTAATGGACCG CAGGTTGTTCGTGTTTTCTTGAGGTTGGCTTTTTATACCAGTAGTGATGG TTGACACCTCACGCCTTCAAACCTTGGGTAATTCAGACGGCGGTAGATGT ATATCTCGAGGAATGTAGTTGGCAGGGAATCTCACACCCATGTTTGGCGA GAAATCTGCGAAAATGTGGAAGCCTCCGCCGTGTACCTTGGTTTTGATTC GGATCGCGGCTCAGGCCACGAGAGGTTTGTCGTAGGAATCGTTTGGAATC TTGTTTCCGCGCGGTCGACATAGCGCACCCCCAAACCTTGGATGCACCTG ATGACCCGGCGGTAGACCCATCTCTCAAAGCAGTTGGCAAAGAATCCCGT CCCTTTCTCGGCGAGATATGGACGAAAATTTGAAGATATGGACTCCCTCG GGTGCAAGCAGCCGGAAATGCCTCGCAGACCATGAGGATCTCCGCTCGTA AGTCTTGCCACGTCCAATTCTGATTTTGATTGAGATATGCATACAGCAGT GTCAATACTGGACGTTTCCAGGACTTTGTATCGAACTTTCGATTTTCAGC ACTCCTCGAATGAAACGTGTATTTTCACATTTCCGGTCGACGAAGGGATC CCATGCCACCTGTCGTTCGAAGGTTTTATTTTTTTTCGTATTTTGACATC AACAATCATGAAACCGCGCGTACATGGCGTCGGACGTCTTCGTGCCGCAT GTTCCGACATGCGGCGGCATATCACTGGTACATGCATAGCAGTGTTGTTT CTGTTCTTGTTTCGTGCTTGTCGTCTTTGTGGATGTGTTGTGTGTGTGGT GTGTCTCCGCATGCAGACCCCTCGACTTATCCTTCGTCATTTTTTTCATC GGTCTCCCCTCGGGGATGCTCAGTTTAATGTTGTAGTAGGTGTCCCTCTC TGTAGGACTTCACTTACTTTTTTCTCATGACCTTGCGGGAGAAACGCTAC TAGTAGTATGATCGTACAGCACTTCAACACGCTACTCGACCCAGACTCGT GTAAATCCCAGCGTATTGGACTAAACATCGATCGCAAGACACGCTGCTGT ACTTGATATAAGGTGCGAGTGCTTCTGACCGTATTCGTCCCCGACCGTGC ACAGCCGCAACGCATGTTTATGGTGTGTACTGGGTGGTAGGTTGGCCGTG TCGCGTTTTTCGCGTACGCGTGGACTGGGTGAGTATACGACGTTCCAGCG AATACGGCCGTGCATACTTGAGTGACTTGGGAGCGTCCTGATGGTATTAT CCTGTTTTCTCGCACTCTCATCGAACATTTCACGGTTTATTTTCCCGCTC GAGCTCCATTCCTGCTGGAAAGTATCGTACCTTCGAGCGAGTTTTTTTTC AACACACCTCGACAGAAGTCTCACGTACTCAAAACATGTTGCCAACATTT TCGCTGCTTGTCTACGTTTTATCCTGCACGCCTGTTGTTGCTTGTCGCAG GGCTCAAGCAGGCCACGACAGGTCTGTTGCAGCCGTCGGCTTTCCCTGCA TCCATTCCAGGACCACTCCTTTTCGCGTTTCCTGGGGTTAGTCAATCGGC TTCGTTGCCACAATCACGAGAGCACGGCGAAGGAATGGAGGAGGGGGCTT GGGAGGAGTTAAGGGACGGGCTGGAGGGTCTATTTGAAGGTGGCTTGTGG GCGACTAGCGTGAAGCGGAAGCGCGTGACAAAGATGAGAAAGCACAAGTG GAGGAAAAGGCGGAAGGCTGAGCGCCAATCGGCGTCTCGGAGAGCCAACT AGAGGTCGCCCCTACGTAATCTCAGGCAGCTGTAGACGCCTGTGGATCTG TGATTGGTATTAAGCGGCTACGTTTTCCGGCTACAGTGGGCCCTTATAAT TTTGTGCTTTGTCCCGAGACTTTGCAGCACCCCGTGCGTAGGTTATTCCT ACAGCGTTGTCAAAAAGCGCATTCATGTTCCCTGTTGACTTTGCAACGCA CGAATCTTCTGAGTTATCGTGACCCTCCAGTTGTGCACACACCGTAACCC TGTATTTCCCTCCCGCAAAAGTCGGTGCACTTCCTGTATCTCACTATTTG CGTAGTCAGACGGATTGGTGGCGATCCTGGAAACGGAAGATCTCTGCGAA TGGAATAAAAAAGATGCATGTGTTACGTGTGTGTCCGCTTTCAGTCAGCA AAGTCACCTTTTACCAATTTTTATCTCGACTCTCGTTTGGCCCTCTGGGC CAGGCCGCTACCCAGCCAACAACACGATTGTACTCCTGTTGTGACACCAG ACGGCCTCGCCGAATTTCGGGCTTCTTTGTGCCTCCCGTTTCCGGCTTGC GTGGTGTCGCAAGCACCTCGGCCTAACTCTAAATGAGATACGTATCGC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig110:387901..396298+

>mRNA_P-littoralis_Contig110.81.1 ID=mRNA_P-littoralis_Contig110.81.1|Name=mRNA_P-littoralis_Contig110.81.1|organism=Pylaiella littoralis U1_48|type=CDS|length=354bp|location=Sequence derived from alignment at P-littoralis_Contig110:387901..396298+ (Pylaiella littoralis U1_48)
ATGGGGAAGCATGGGTCATACTTGCCGCTGAAAGTTTCAGAGGTTTTGCA
AGGGCTCAAGCAGGCCACGACAGGTCTGTTGCAGCCGTCGGCTTTCCCTG
CATCCATTCCAGGACCACTCCTTTTCGCGTTTCCTGGGGTTAGTCAATCG
GCTTCGTTGCCACAATCACGAGAGCACGGCGAAGGAATGGAGGAGGGGGC
TTGGGAGGAGTTAAGGGACGGGCTGGAGGGTCTATTTGAAGGTGGCTTGT
GGGCGACTAGCGTGAAGCGGAAGCGCGTGACAAAGATGAGAAAGCACAAG
TGGAGGAAAAGGCGGAAGGCTGAGCGCCAATCGGCGTCTCGGAGAGCCAA
CTAG
back to top