mRNA_P-littoralis_Contig110.80.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig110.80.1
Unique NamemRNA_P-littoralis_Contig110.80.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig110.80.1 vs. uniprot
Match: A0A6H5J7S9_9PHAE (FCP1 homology domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J7S9_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 2.320e-12
Identity = 47/92 (51.09%), Postives = 54/92 (58.70%), Query Frame = 3 
Query:  138 STPYAASAAATPIASAKRPKKRANQAMNIALPMRLAALGGD-----NNIVDANESGKNDGTPXXXXXXXXXXXXXXXXXXXNTTPLGKRSEE 398
            STPY+ASAAATPIASAKRPK+RANQA+N + P+R AALGGD         D N +G   G                     NTTPLGKR+EE
Sbjct:    3 STPYSASAAATPIASAKRPKRRANQAINSSSPVRRAALGGDVVSATKGSDDGNAAGTATGEGGSSFSCEGGGGASTSDTKTNTTPLGKRAEE 94
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig110.80.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5J7S9_9PHAE2.320e-1251.09FCP1 homology domain-containing protein n=2 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig110contigP-littoralis_Contig110:385034..387458 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LMF9
PFAMsNIF
Model size399
Max annot lvl2759|Eukaryota
KEGG koko:K17616
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004721,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019538,GO:0036211,GO:0042578,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0071704,GO:0140096,GO:1901564
Exons3
Evalue6.35e-09
EggNOG OGsCOG5190@1|root,KOG1605@2759|Eukaryota
Descriptionphosphoprotein phosphatase activity
Cds size270
COG categoryK
BRITEko00000,ko01000,ko01009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789435.038704-CDS-P-littoralis_Contig110:385033..3852031680789435.038704-CDS-P-littoralis_Contig110:385033..385203Pylaiella littoralis U1_48CDSP-littoralis_Contig110 385034..385203 -
1680789435.0484242-CDS-P-littoralis_Contig110:385582..3856571680789435.0484242-CDS-P-littoralis_Contig110:385582..385657Pylaiella littoralis U1_48CDSP-littoralis_Contig110 385583..385657 -
1680789435.0568228-CDS-P-littoralis_Contig110:387305..3873301680789435.0568228-CDS-P-littoralis_Contig110:387305..387330Pylaiella littoralis U1_48CDSP-littoralis_Contig110 387306..387330 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789435.0665941-UTR-P-littoralis_Contig110:387330..3874581680789435.0665941-UTR-P-littoralis_Contig110:387330..387458Pylaiella littoralis U1_48UTRP-littoralis_Contig110 387331..387458 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig110.80.1prot_P-littoralis_Contig110.80.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig110 385034..387330 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig110.80.1

>prot_P-littoralis_Contig110.80.1 ID=prot_P-littoralis_Contig110.80.1|Name=mRNA_P-littoralis_Contig110.80.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=90bp
MPSSTPYAASAAATPIASAKRPKKRANQAMNIALPMRLAALGGDNNIVDA
NESGKNDGTPPPHGGGSSSPAGGADTSSSNTTPLGKRSEE
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mRNA from alignment at P-littoralis_Contig110:385034..387458-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig110.80.1 ID=mRNA_P-littoralis_Contig110.80.1|Name=mRNA_P-littoralis_Contig110.80.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2425bp|location=Sequence derived from alignment at P-littoralis_Contig110:385034..387458- (Pylaiella littoralis U1_48)
CCAGGACGCTGCTGCAACAGGACGACAACAAATAAAATACCGCCGTGTCT
CTTCACAGCCGAAGAGAGTCGGCGAGAAAGGAGCTGAAAACAGGGAAGGA
TAGCAGCGACGTCGGTAATCATATAATAATGCCGTCGTCGACACCGTACG
CAGGCAAGAATTGTAGGTGATGGCGTTGAGATTTAGAAATTGAGCATGTC
GACACCTCTGGGAGTTTTTGAGGGAGTGTTTTTTGACAAATTCCCCCAGC
CGAAGAGATGGACAAAAGGCAGACAACACCAAAAACCGCACCGAGATGAT
ACTGATCCCTGCTGCTGTCAGCGATGATGAACAAGCTATAAGTCTTGCAG
TCACAGCCCGTGAACGCCCGGAACTTCCTGTTTGTACAACTCGTGGAATG
CTCCGAGTATTGGTATTGCTCAATAAAATGAGGGTTGTGGAGACTTCGTT
GGCTACGTGACTGCACGTTCGAAAGACGCGCTCGAACTCCGCTTCGTAAG
CTGCCCCCCCTCCATGGCCACCGCACCTTCCAGCTGATATTCCTAGTCCT
CTGGCCTCGCCGACGACCCTACTCGAAGTCGTAGCCAGCCTTTACCTGAA
TCCTGCCACCGGCGTAGCTCATATTCAGATTCCTTCCTTCACATCAACAC
AGCCATGGTCGATACATTTTTTTTTTTCCCTGTTGTAGGGTTCGAACCGC
AAATAGTTTGCCCGTTGACAATATAGCTCAGAGCACACATACTCGTACTC
TATGATATGATGCGGAATCGAGATTATGTTGAGTGAGACTCTTTCTGTTT
TGGCGGAATTTAATCACATTATGCGTGCGTGTCTCATCATGCACGAAGTC
TCAAGTTTGTCTCATTCTTCAAGGCCTACGCCAACAGCAACAGCGGAGCT
TTTCACCACTCACCGATTTTTCTTGTTGATGCGGTAATTGTCGGTAGTCG
TCGGCACGGGAGCGTTATATTTGCAGCAAATCGATTGTTGCTGTCAAAGA
AATTAGAGTTATAGTCTTGTTTAACTGCTTTTTTGGCGCCAAATTCGAGA
GACACTGCAATTTGCCTTGTTTACGCGGATTACCGGTACTGTACAGCAGT
ATCTCGTAATGCATGCAAGATTTCCCGCAATGAACGGTCGCCATCAGTGG
ACAACGGACAACTACCGGTACTTGTACCTCAATGCCAGTACATTTATGAT
ATATACGATAGGACGTATCACATGCAACCTGCTGCACATTGCGCAGCTTC
GTTTGGATGGAAACACCAGGAACACCAGCGTCCAAGATAATATTCCCGGA
GTTTCTATTCAACACCGCCGCAGAGCGTGTATCCTTATTCGTGATAATCC
GTGCAGAATTCGCCTATTTTGCGGCGACATACAAGTGCAACGTCTTGGCA
TGTGCGTTGTGAAATCAGTTACCATACCTGGCGTGTGCATTGTACAGGGT
ACAAATTCGGATTTGGTATCCCAAGAATTGTGATTATAGAGTATCAGTCA
TGTTGTGCCGACAACGAAATGCCACCATTGCGCTGCTCTGCGGGCGTATT
CTCACCGAACTACTTCAGTATGTTGTGAAATTCCATTTTATCGTCGAGTA
AACTGACCAAGACATCCTCGTACAATCGGGAACTCGTTGGGCACCGTCAT
TTGCCCAGGCGCCACGTTTGCAGACTTGACCTGTGTGTTGCTGACATCAT
TTATTATCTAAAGCTTGCACAACAAGTAGTAACGACGACCGACCTCACCC
TCATTTGGTGCCCTTCCCCTGTTTTTGTCACTGCTTTCTATCCTCACTCA
GCGTCTGCGGCTGCCACGCCCATCGCTTCTGCCAAGCGCCCCAAGAAACG
AGCGAACCAAGCTATGAATATCGCCTGTGAGTTGGAGCCTGTCAGTTTCT
GCTGTTTTGACAGGTGGTGTCATTTCGTGTGGTGTTCACGTTCACTCTAA
GGCTTGTAGGTACGAGTGCTTCGGTGTTTTTTAAAGGCGGCTCCATGCAC
GATTGGGTTTCTTAAACTGCTACTCTGTGTGTGCGTCCAACCGTTTGATG
GCTGTTCAACACTCCAGAGACCGCGGTGTCAGAGATGATGGACGCGACTG
GTTTTGATGAATATGGTACATGTTGATGTTGTTGATTCTCACATTACATA
TATCCTTGTGTTTGCCCATCATACGTGACCGCATCTAGTACATTAACTAA
AAAGCATTCGAATGACCACCATTTCTCGCCTCGGCCAATGGAATCACCAC
AGCAGTGCCAATGCGGCTAGCCGCCTTGGGTGGTGACAACAACATCGTTG
ACGCTAACGAAAGTGGGAAAAACGACGGGACACCACCACCACACGGAGGG
GGAAGCTCATCGCCCGCAGGTGGTGCTGACACTAGCAGCAGTAACACCAC
GCCGTTGGGAAAGAGGTCTGAGGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig110:385034..387458-

>mRNA_P-littoralis_Contig110.80.1 ID=mRNA_P-littoralis_Contig110.80.1|Name=mRNA_P-littoralis_Contig110.80.1|organism=Pylaiella littoralis U1_48|type=CDS|length=270bp|location=Sequence derived from alignment at P-littoralis_Contig110:385034..387458- (Pylaiella littoralis U1_48)
ATGCCGTCGTCGACACCGTACGCAGCGTCTGCGGCTGCCACGCCCATCGC
TTCTGCCAAGCGCCCCAAGAAACGAGCGAACCAAGCTATGAATATCGCCT
TGCCAATGCGGCTAGCCGCCTTGGGTGGTGACAACAACATCGTTGACGCT
AACGAAAGTGGGAAAAACGACGGGACACCACCACCACACGGAGGGGGAAG
CTCATCGCCCGCAGGTGGTGCTGACACTAGCAGCAGTAACACCACGCCGT
TGGGAAAGAGGTCTGAGGAG
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