mRNA_P-littoralis_Contig110.57.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig110.57.1
Unique NamemRNA_P-littoralis_Contig110.57.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig110.57.1 vs. uniprot
Match: A0A7S2MHM4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MHM4_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 3.990e-12
Identity = 37/85 (43.53%), Postives = 53/85 (62.35%), Query Frame = 1 
Query:  577 RSIPTSAKQPAKKAEQRPQPRKDDSDQPIFKTLRTGESVEACYTADDKWYSAIVLQVIHGGFNVARYKVRYSAYGNEETLPWTKI 831
            R  PTS K+P  + E  P+     +  P++K LR G+ V+A ++ D  +Y A+V QVIHGGF +A+Y V Y+AYGN E + W  I
Sbjct:   18 RVTPTSPKKPTGRGESGPK-----APVPLWKRLRVGDQVQARFSEDRTYYEAVVKQVIHGGFAIAKYTVLYTAYGNSEVVSWKDI 97
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BLAST of mRNA_P-littoralis_Contig110.57.1 vs. uniprot
Match: A0A836CA01_9STRA (Tudor domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA01_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 3.910e-11
Identity = 30/59 (50.85%), Postives = 45/59 (76.27%), Query Frame = 1 
Query:  658 PIFKTLRTGESVEACYTADDKWYSAIVLQVIHGGFNVARYKVRYSAYGNEETLPWTKIR 834
            P++  L+ G++VEA YT DD WY+A VLQVIH G+++ + KV Y+ YGN+ET+ W ++R
Sbjct:  568 PLYARLKLGDAVEAQYTEDDTWYAAKVLQVIHSGYSICKVKVEYTQYGNQETILWKRVR 626
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig110.57.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S2MHM4_9STRA3.990e-1243.53Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A836CA01_9STRA3.910e-1150.85Tudor domain-containing protein n=1 Tax=Tribonema ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig110contigP-littoralis_Contig110:284956..287767 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog86049.XP_008727684.1
PFAMsSNase,TUDOR
Model size1308
Max annot lvl4751|Fungi
KEGG koko:K15979
KEGG Pathwayko05169,ko05203,map05169,map05203
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004518,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006325,GO:0006342,GO:0006355,GO:0006401,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016442,GO:0016458,GO:0016787,GO:0016788,GO:0019219,GO:0019222,GO:0019439,GO:0031047,GO:0031048,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031332,GO:0032991,GO:0034641,GO:0034655,GO:0040029,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044464,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0046700,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0060255,GO:0065007,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0097159,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902679,GO:1903506,GO:1903507,GO:1990904,GO:2000112,GO:2000113,GO:2001141
Exons3
Evalue2.11e-05
EggNOG OGsCOG1525@1|root,KOG2039@2759|Eukaryota,38HTP@33154|Opisthokonta,3NVE3@4751|Fungi,3QP50@4890|Ascomycota,20CKK@147545|Eurotiomycetes,3MS5F@451870|Chaetothyriomycetidae
DescriptionTudor domain
Cds size1308
COG categoryK
BRITEko00000,ko00001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789433.934769-CDS-P-littoralis_Contig110:284955..2854901680789433.934769-CDS-P-littoralis_Contig110:284955..285490Pylaiella littoralis U1_48CDSP-littoralis_Contig110 284956..285490 -
1680789433.9442062-CDS-P-littoralis_Contig110:285627..2857221680789433.9442062-CDS-P-littoralis_Contig110:285627..285722Pylaiella littoralis U1_48CDSP-littoralis_Contig110 285628..285722 -
1680789433.9555287-CDS-P-littoralis_Contig110:287089..2877671680789433.9555287-CDS-P-littoralis_Contig110:287089..287767Pylaiella littoralis U1_48CDSP-littoralis_Contig110 287090..287767 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig110.57.1prot_P-littoralis_Contig110.57.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig110 284956..287767 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig110.57.1

>prot_P-littoralis_Contig110.57.1 ID=prot_P-littoralis_Contig110.57.1|Name=mRNA_P-littoralis_Contig110.57.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=436bp
SRSPTSTRFRNDEKQHRAFEPVKVKGAIVTAEQTKAAVKRRLRQVVATDA
TLKSGAKATTGGGMGWERPEMSAASEFFQSDEIAAKGGVASVAPEYEARL
TEILAVEDEEITCLGEQKAQPVSAAGSTESSVLEQKHHDAIFAPSGSISE
QRASGTAATPKAGMRSVGAIGAAARARLALTGKLGEESTTKPRSIPTSAK
QPAKKAEQRPQPRKDDSDQPIFKTLRTGESVEACYTADDKWYSAIVLQVI
HGGFNVARYKVRYSAYGNEETLPWTKIRRAREPSQEGSCSVNQGAVELET
APSEEEIAAPADEAPPPFAGMRPRALCVENKSPRRPQTSEKHSVTQAGPA
DVVNAALRPAAPGRKLSWKDKLAARKSAVNVQTAAGVHVLSKGQISLIPD
FAAQRREQNVDTAMDKSEWRAKVAFGMGNSKRRPS*
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mRNA from alignment at P-littoralis_Contig110:284956..287767-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig110.57.1 ID=mRNA_P-littoralis_Contig110.57.1|Name=mRNA_P-littoralis_Contig110.57.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2812bp|location=Sequence derived from alignment at P-littoralis_Contig110:284956..287767- (Pylaiella littoralis U1_48)
TCGAGGAGTCCCACTTCAACCAGATTCAGAAATGACGAGAAACAACACCG
CGCTTTCGAGCCGGTAAAAGTGAAGGGTGCGATCGTCACGGCAGAGCAGA
CGAAAGCAGCGGTCAAACGACGGCTTCGGCAAGTGGTTGCTACTGACGCA
ACGCTCAAAAGCGGGGCCAAAGCCACCACAGGTGGGGGGATGGGCTGGGA
GCGACCAGAAATGTCAGCAGCCTCGGAATTTTTTCAAAGCGACGAAATTG
CTGCCAAAGGCGGGGTCGCATCTGTGGCTCCTGAATATGAAGCCCGCTTG
ACTGAGATTCTTGCCGTCGAAGACGAGGAAATAACATGCCTGGGTGAACA
GAAGGCACAGCCTGTGTCTGCGGCCGGCAGCACCGAATCGTCTGTGCTTG
AGCAAAAGCATCACGATGCGATTTTTGCACCTTCAGGGTCGATTTCCGAA
CAACGTGCTTCTGGAACTGCTGCAACTCCCAAGGCGGGAATGCGTTCAGT
CGGAGCGATTGGAGCTGCTGCTAGAGCTCGGCTTGCGTTGACGGGCAAGC
TCGGCGAGGAGTCGACGACCAAACCCAGATCAATCCCGACCAGTGCGAAG
CAACCGGCCAAGAAAGCCGAACAGCGCCCACAGCCTCGTAAGGATGACAG
CGACCAGCCCATATTCAAGACGCTTCGGGTGTGTGTTTCTGTCATTGAAC
TGCGTGTCGGAGTCATTTTTCAAGCCCTCAATTTCGCCCAAAGATATCAT
TTCCACGGAAATAAAAATATCATTCCTCCATTGTTCCGCCCCTACACAGT
CTCTCCCATGCTCTAACCCCAACTTCGGCCGAAAAGCTTGAAAACTTTGG
AGGAAAACTGCACTTTTGACACGATTTCCCTTGATTAGAGTGTTTTTCTA
CCATTGCGTATCCCCCGCGTTTTTCTCCTGCGGGTTTTTTTTTCCGATTT
TGGCATTACTACGAATGAAAATCGCCGGCCCGAGGCCGAATAATTTTTTT
TTGCCACTTGAGCTGGGATGTTAACCATCAGATGTGTAAGTATCGCCGGG
GAGAGCGCAGCATCCATTGTTTTTGTGTGTAGTTCTCCTTTAGGACTTCG
CGCTCTACCGTCGGGGAGATTTCCCCGCGGGGCACATGTAACGATGAAGA
GAACGGAATTTTCCCCTGGGCCAATGGCTCGAGAGCAACGAAAATTCGGG
CATTCGACGAGGAAATTTCCCCTGGGCTGAAGGTTGTTCATACTGGAGAG
CTGATTTTTCTGACCGTTTTCACCCATTTCCGATCAAGCAGCGAGCCCCA
AAACGGCCTCATACCTTACTTTTAGAAGACAGCACGTGAAACATCAGTCG
ATGCTCGGCCCCTAGGACACCAAAAGCTACCAAACCTTTTGATGCGTACC
CTTCTTTTGGCTGAGGTTAGTCATGCAAAAGTTTGTCGGTTCCTGGCTCT
GTCGATCGCGAGGGTTCGGCGATGTAGTGGTTCGGGCTTCAACTTTCGGT
TGGTGCTCCAGTTGGAGATGATGAAGAAAAATGACACGGTCGCCATTGCG
ACCGAAAATTGAAGCCTGGAGCACTCCGCCACCGGAATCTCGCGATAGAC
AGCCGACCGATGCTTGGTGTGGCTAAGCTCAGAACACAGAAGCTTACGCC
TTATAAGGTTTGGTGACGATTGGCGTCCTAGGGCTCAGCATCGATTGATG
TTCCACGTGTTGTGTTCCAAAAGCAAAAGGTGGGGCCGCTTCGGGGTTCG
AACCTCGATCGAAAAAGGGTGACGACAGATCGTAAAATCAATTTTTCAGA
AACAGTCAAGTGTTTCAGGAAGAAACACCCCCCCCCCCGCATAACACGAT
TCCCGCCGGGGCGTGTTTTCTGAAGAAAAACATGACCCCCCTCTCGAGGC
GGAAAACAGAGAGGATCACGATATTTCTTTACGGCGGCATGGTACTATAC
CATTTATACTATCGAACTAAGACATGCCGTTGACGAAATACGCCACTGAA
CTCGCAAGTCTCATCTCGTTTATATAATTTTTTTTCCTGTGCCAGACTGG
GGAATCTGTGGAGGCTTGCTACACAGCGGATGACAAATGGTACAGCGCGA
TTGTTCTCCAGGTCATCCACGGCGGCTTCAATGTTGCCAGGTAGGCACCA
ACTGTCGTACTGAGCCCTGTGTTTGTCTTTCACAAATATGACGTTCCTGA
CGTAGATTTGGTCGTCTGAAACAGGAGGTATGGCATTTATCTCGTTCGCA
GCTGACGCCTTGGCCACCGCGACACAGGTACAAGGTCCGCTACTCCGCTT
ACGGCAACGAAGAGACCCTCCCTTGGACAAAAATAAGGCGGGCGAGAGAA
CCTTCTCAAGAGGGCTCGTGTTCAGTGAACCAAGGAGCCGTAGAACTTGA
GACAGCACCATCTGAAGAAGAGATCGCTGCGCCTGCAGACGAGGCTCCCC
CACCGTTTGCCGGAATGCGCCCACGCGCGTTGTGTGTCGAGAACAAGAGC
CCACGGAGACCGCAAACGAGCGAGAAGCATAGTGTGACACAGGCAGGGCC
CGCAGATGTCGTAAACGCTGCCTTACGACCAGCAGCACCGGGACGAAAAT
TATCCTGGAAAGATAAGCTAGCGGCCAGAAAATCTGCGGTCAATGTGCAA
ACTGCAGCCGGCGTACACGTTCTCTCTAAGGGACAGATTTCCCTGATTCC
CGATTTCGCAGCGCAGCGGAGGGAACAGAATGTGGATACGGCAATGGATA
AGAGCGAATGGCGTGCAAAGGTTGCTTTCGGTATGGGAAATTCGAAGAGG
CGTCCGTCCTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig110:284956..287767-

>mRNA_P-littoralis_Contig110.57.1 ID=mRNA_P-littoralis_Contig110.57.1|Name=mRNA_P-littoralis_Contig110.57.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1308bp|location=Sequence derived from alignment at P-littoralis_Contig110:284956..287767- (Pylaiella littoralis U1_48)
TCGAGGAGTCCCACTTCAACCAGATTCAGAAATGACGAGAAACAACACCG
CGCTTTCGAGCCGGTAAAAGTGAAGGGTGCGATCGTCACGGCAGAGCAGA
CGAAAGCAGCGGTCAAACGACGGCTTCGGCAAGTGGTTGCTACTGACGCA
ACGCTCAAAAGCGGGGCCAAAGCCACCACAGGTGGGGGGATGGGCTGGGA
GCGACCAGAAATGTCAGCAGCCTCGGAATTTTTTCAAAGCGACGAAATTG
CTGCCAAAGGCGGGGTCGCATCTGTGGCTCCTGAATATGAAGCCCGCTTG
ACTGAGATTCTTGCCGTCGAAGACGAGGAAATAACATGCCTGGGTGAACA
GAAGGCACAGCCTGTGTCTGCGGCCGGCAGCACCGAATCGTCTGTGCTTG
AGCAAAAGCATCACGATGCGATTTTTGCACCTTCAGGGTCGATTTCCGAA
CAACGTGCTTCTGGAACTGCTGCAACTCCCAAGGCGGGAATGCGTTCAGT
CGGAGCGATTGGAGCTGCTGCTAGAGCTCGGCTTGCGTTGACGGGCAAGC
TCGGCGAGGAGTCGACGACCAAACCCAGATCAATCCCGACCAGTGCGAAG
CAACCGGCCAAGAAAGCCGAACAGCGCCCACAGCCTCGTAAGGATGACAG
CGACCAGCCCATATTCAAGACGCTTCGGACTGGGGAATCTGTGGAGGCTT
GCTACACAGCGGATGACAAATGGTACAGCGCGATTGTTCTCCAGGTCATC
CACGGCGGCTTCAATGTTGCCAGGTACAAGGTCCGCTACTCCGCTTACGG
CAACGAAGAGACCCTCCCTTGGACAAAAATAAGGCGGGCGAGAGAACCTT
CTCAAGAGGGCTCGTGTTCAGTGAACCAAGGAGCCGTAGAACTTGAGACA
GCACCATCTGAAGAAGAGATCGCTGCGCCTGCAGACGAGGCTCCCCCACC
GTTTGCCGGAATGCGCCCACGCGCGTTGTGTGTCGAGAACAAGAGCCCAC
GGAGACCGCAAACGAGCGAGAAGCATAGTGTGACACAGGCAGGGCCCGCA
GATGTCGTAAACGCTGCCTTACGACCAGCAGCACCGGGACGAAAATTATC
CTGGAAAGATAAGCTAGCGGCCAGAAAATCTGCGGTCAATGTGCAAACTG
CAGCCGGCGTACACGTTCTCTCTAAGGGACAGATTTCCCTGATTCCCGAT
TTCGCAGCGCAGCGGAGGGAACAGAATGTGGATACGGCAATGGATAAGAG
CGAATGGCGTGCAAAGGTTGCTTTCGGTATGGGAAATTCGAAGAGGCGTC
CGTCCTGA
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