mRNA_P-littoralis_Contig110.24.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig110.24.1 vs. uniprot
Match: A0A0G4IJA9_PLABS (Uncharacterized protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IJA9_PLABS) HSP 1 Score: 112 bits (281), Expect = 9.360e-27 Identity = 54/137 (39.42%), Postives = 89/137 (64.96%), Query Frame = 2
Query: 401 WCCRKRSGMGPTLQDQLTEKLRGIDLCYPGTNYACLLDLEGKFLSGFFVDGEAPQRDEVCAAVAALKRAAEQFAATLGQLDCPVLHISGESHLFSCYDLGESVLAFYSHMGSSNLRSFNTHDADVRLRDLLADIKLL 811
WCCR+ +G+ + Q+ KLR I+ +P T +C++ G+ ++ V + + D++ +A LKRAAEQF +TL Q CPV+H+ G +FSCY+LG+ +LAFY+ M +L +++T DAD R+ ++AD++LL
Sbjct: 2 WCCRRPAGLSAQVSRQIQAKLREIETVFPRTVVSCIVTQTGELIAQQ-VKPDQERVDDLVLPIAQLKRAAEQFGSTLNQSSCPVVHLRGNRVMFSCYELGDHLLAFYTDMSGVDLMTYDTADADSRMGFIIADLRLL 137
BLAST of mRNA_P-littoralis_Contig110.24.1 vs. uniprot
Match: A0A835ZF51_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF51_9STRA) HSP 1 Score: 114 bits (285), Expect = 4.830e-25 Identity = 67/187 (35.83%), Postives = 109/187 (58.29%), Query Frame = 2
Query: 398 SWCCRKRSGMGPTLQDQLTEKLRGIDLCYPGTNYACLLDLEGK----------------FLSGFFVDGE---APQRDEVCAAVAALKRAAEQFAATLGQLDCPVLHISGESHLFSCYDLGES---------VLAFYS-HMGSSNLRSFNTHDADVRLRDLLADIKLLLTGAVLLSPGSSNSPPVAAS 871
SWCCR+ +GM P+L D+L +LR I YPGT+Y CL+D G+ ++G F + AP D+ C AV++L AA QFA TL Q+ C V+HI+G+ HLFSCY++ + +LAFY+ + + + +T DAD ++ ++A ++ +L G +++P +++SPP++ S
Sbjct: 3 SWCCRESTGMVPSLPDELETELRQILHYYPGTHYTCLMDAAGRRQGGSSLTIGAVLPHPLVTGSFTSDDVLDAPP-DKFCTAVSSLHNAAVQFARTLDQMGCSVMHIAGDQHLFSCYEVVDKSQPGLVNPWILAFYTTSVDGVPVSAIDTRDADEGVKKIVAALESMLAG--VMTPPANSSPPISTS 186
BLAST of mRNA_P-littoralis_Contig110.24.1 vs. uniprot
Match: A0A0H5QGE2_9EUKA (Uncharacterized protein (Fragment) n=2 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5QGE2_9EUKA) HSP 1 Score: 108 bits (270), Expect = 7.830e-25 Identity = 50/144 (34.72%), Postives = 91/144 (63.19%), Query Frame = 2
Query: 398 SWCCRKRSGMGPTLQDQLTEKLRGIDLCYPGTNYACLLDLEGKFLSGFFVDGEAPQRDEVCAAVAALKRAAEQFAATLGQLDCPVLHISGESHLFSCYDLGESVLAFYSHMGSSNLRSFNTHDADVRLRDLLADIKLLLTGAVL 829
S CCR+ +G + Q+ KL+ I++ +P T +C+L G+ ++ + G P+ D++ +A+LK+AAEQF +TL CP+LHI G + +FSCY+ G+++LAFYS++ ++T DAD R+ ++++++LL ++
Sbjct: 29 SMCCRRSNGFSLQVMKQIQGKLKEIEMVFPETTASCILSQSGELIAQQ-IKGNNPRVDDLVLPIASLKKAAEQFGSTLNAAKCPILHIRGNNVMFSCYEFGDNLLAFYSNLNGKETE-YDTTDADTRMSIIISELRLLFQNLIV 170
BLAST of mRNA_P-littoralis_Contig110.24.1 vs. uniprot
Match: A0A1V9Y5W5_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Y5W5_9STRA) HSP 1 Score: 85.9 bits (211), Expect = 1.230e-16 Identity = 48/142 (33.80%), Postives = 76/142 (53.52%), Query Frame = 2
Query: 404 CC--RKRSGMGPTLQDQLTEKLRGIDLCYPGTNYACLLDLEGKFLSGFFVDGEAPQR--DEVCAAVAALKRAAEQFAATLGQLDCPVLHISGESHLFSCYDLGESVLAFYSHMGSSNLRSFNTHDADVRLRDLLADIKLLLT 817
CC R+R +L +++ G+ YPGT Y C+LD G L+ + DE+ + L+++ FA+TL + V+HI GESH+FSCY L VLAFYS M S ++ F+ +AD +L + +++ + T
Sbjct: 7 CCAARRRKERQKSLLKAQLDRVHGV---YPGTTYVCILDESGDVLAQVMTEPSCASMNPDELAGVITTLRQSVALFASTLNHAETQVVHIKGESHIFSCYSLDAHVLAFYSVMPSVDVALFDCSEADRKLEGICIELQRIAT 145
BLAST of mRNA_P-littoralis_Contig110.24.1 vs. uniprot
Match: L8H113_ACACA (Uncharacterized protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H113_ACACA) HSP 1 Score: 83.6 bits (205), Expect = 8.380e-16 Identity = 41/145 (28.28%), Postives = 81/145 (55.86%), Query Frame = 2
Query: 407 CRKRSGMGPTLQDQLTEKLRGIDLCYPGTNYACLLDLEGKFLSGFFVDGEAPQRDEVCAAVAALKRAAEQFAATLGQLDCPVLHISGESHLFSCYDLGESVLAFYSHMG-SSNLRSFNTHDADVRLRDLLADIKLLLTGAVLLSP 838
C+K +G+ P + +L + + +P T +++ +G+ L F + A ++++C + LKRAA +FA T G+ +C +L + G +FSCY +GE+ +AF++ + + S T ++R++ L ++KL+L A + P
Sbjct: 6 CKKETGLSPVVYRKLENVFKELQTLFPATPSCAIVNAQGELLYAFGEEASAGIQEDICLTLQKLKRAAVKFAETQGEHECSLLRVKGTKQIFSCYQIGENFMAFFTPLPVDEEVESVQT---ELRMQALCEELKLMLLDANIAKP 147
BLAST of mRNA_P-littoralis_Contig110.24.1 vs. uniprot
Match: A0A8K1C6G3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C6G3_PYTOL) HSP 1 Score: 82.8 bits (203), Expect = 2.050e-15 Identity = 47/124 (37.90%), Postives = 74/124 (59.68%), Query Frame = 2
Query: 410 RKRSGMGPTLQDQLTEKLRGIDLCYPGTNYACLLDL-EGKFLSGFFVDGEAP--QRDEVCAAVAALKRAAEQFAATLGQLDCPVLHISGESHLFSCYDLGESVLAFYSHMGSSNLRSFNTHDAD 772
R+RS L + E++RG+ YPGT+YACLL+ G+ ++ E P +E+ + LKRAA+QFA TL Q++ V+H+ G+ +FSC+ ++LAFY+ M NL F+ ++AD
Sbjct: 12 RRRSDHNERLYQEQFERIRGV---YPGTDYACLLNAASGEIIA----QTEIPVVNTEELARTIVTLKRAAQQFATTLTQVESQVVHVKGDDRMFSCFGGEGTILAFYTQMPGVNLELFDCNEAD 128
BLAST of mRNA_P-littoralis_Contig110.24.1 vs. uniprot
Match: A0A7S0RKJ8_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0RKJ8_9CHLO) HSP 1 Score: 55.1 bits (131), Expect = 1.840e-5 Identity = 28/77 (36.36%), Postives = 45/77 (58.44%), Query Frame = 2
Query: 596 LKRAAEQFAATLG-QLDCPVLHISGESHLFSCYDLGESVLAFYSHMGSSNLRSFNTHDADVRLRDLLADIKLLLTGA 823
LKRA +F +G Q CP++H+ G H+ SCYD+GE++LA S + ++ ++T A+ + L +K LL A
Sbjct: 92 LKRALLEFGDAVGCQTPCPMVHVKGNDHVISCYDVGENILALVSKLPVITVQVYDTASAEEIIAPQLEQLKHLLVHA 168 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig110.24.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig110.24.1 >prot_P-littoralis_Contig110.24.1 ID=prot_P-littoralis_Contig110.24.1|Name=mRNA_P-littoralis_Contig110.24.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=166bp MSWCCRKRSGMGPTLQDQLTEKLRGIDLCYPGTNYACLLDLEGKFLSGFFback to top mRNA from alignment at P-littoralis_Contig110:96358..100259- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig110.24.1 ID=mRNA_P-littoralis_Contig110.24.1|Name=mRNA_P-littoralis_Contig110.24.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3902bp|location=Sequence derived from alignment at P-littoralis_Contig110:96358..100259- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig110:96358..100259- >mRNA_P-littoralis_Contig110.24.1 ID=mRNA_P-littoralis_Contig110.24.1|Name=mRNA_P-littoralis_Contig110.24.1|organism=Pylaiella littoralis U1_48|type=CDS|length=498bp|location=Sequence derived from alignment at P-littoralis_Contig110:96358..100259- (Pylaiella littoralis U1_48)back to top |