mRNA_P-littoralis_Contig1.359.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1.359.1
Unique NamemRNA_P-littoralis_Contig1.359.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1.359.1 vs. uniprot
Match: A0A6H5KTP7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTP7_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 7.120e-12
Identity = 68/211 (32.23%), Postives = 90/211 (42.65%), Query Frame = 2 
Query:  971 VNMQTELSTGSQLANPELKCIDTVHLPVGTPRRVRVPVLWEMLPSGQTMAPLRAQGGRVLKLCLAHSSLYGDTIRGHVASTAGGIYPVHCLRRDDATFRAEEG*CRGYTGTRQL*IGQGSDGTKGDEASRIDREIVPVREMSRSKSALHYL----VRARFKGAQRGLSLQN*S*IVRVRDLSHMVSALQYLGAGGGAVAVLLEFVTRHFSL 1591
            V+ Q EL  G+ L    L     VH+  GT  R RVPV WE L  GQ +      GGRVL LCL  S           A+ +G  + VHCLRR D  F                                 D E V  +        LH+     VR RF+G  +G   +  + + RVR+++   S+   +GAGGGAVAVL+E +  H +L
Sbjct:  639 VDKQLELPAGAPLIKGSLLGFARVHVRAGTKSRSRVPVSWETLLEGQQLTASWGTGGRVLWLCLTLSYFQVARSDEVCATLSGQCHQVHCLRRSDVEF--------------------------------FDGEDVLAQ--------LHWHKATGVRVRFRG-HKGDQSEKGACVTRVREVARGASS--QIGAGGGAVAVLVELMACHLAL 806
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BLAST of mRNA_P-littoralis_Contig1.359.1 vs. uniprot
Match: A0A6H5K718_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K718_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 8.130e-9
Identity = 60/188 (31.91%), Postives = 80/188 (42.55%), Query Frame = 2 
Query: 1040 VHLPVGTPRRVRVPVLWEMLPSGQTMAPLRAQGGRVLKLCLAHSSLYGDTIRGHVASTAGGIYPVHCLRRDDATFRAEEG*CRGYTGTRQL*IGQGSDGTKGDEASRIDREIVPVREMSRSKSALHYL----VRARFKGAQRGLSLQN*S*IVRVRDLSHMVSALQYLGAGGGAVAVLLEFVTRHFSL 1591
            VH+  GT  R RVPV WE L  GQ +      GGR L L LA S           A+ +G  + VHCLRR D  F                                 D E V  +        LH+     VR RF+G  +G   +  + + RVR+++   S+   +GAGGGAVAVL+E +  H +L
Sbjct:   45 VHVRAGTKSRNRVPVSWETLLEGQQLTASWGTGGRALWLWLALSYFLVARSDEVFATLSGQCHQVHCLRRSDVEF--------------------------------FDGEDVLAQ--------LHWHKATGVRVRFRG-HKGDQSEKGACVTRVREVARGASS--QIGAGGGAVAVLVELMACHLAL 189
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1.359.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KTP7_9PHAE7.120e-1232.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K718_9PHAE8.130e-931.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1contigP-littoralis_Contig1:1584677..1586547 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1871
Hectar predicted targeting categoryother localisation
Exons1
Cds size315
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789322.0074875-UTR-P-littoralis_Contig1:1584676..15852651680789322.0074875-UTR-P-littoralis_Contig1:1584676..1585265Pylaiella littoralis U1_48UTRP-littoralis_Contig1 1584677..1585265 -
1680789322.0265117-UTR-P-littoralis_Contig1:1585580..15865471680789322.0265117-UTR-P-littoralis_Contig1:1585580..1586547Pylaiella littoralis U1_48UTRP-littoralis_Contig1 1585581..1586547 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789322.0184522-CDS-P-littoralis_Contig1:1585265..15855801680789322.0184522-CDS-P-littoralis_Contig1:1585265..1585580Pylaiella littoralis U1_48CDSP-littoralis_Contig1 1585266..1585580 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1.359.1prot_P-littoralis_Contig1.359.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1 1585266..1585580 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1.359.1

>prot_P-littoralis_Contig1.359.1 ID=prot_P-littoralis_Contig1.359.1|Name=mRNA_P-littoralis_Contig1.359.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=105bp
MVNMQTELSTGSQLANPELKCIDTVHLPVGTPRRVRVPVLWEMLPSGQTM
APLRAQGGRVLKLCLAHSSLYGDTIRGHVASTAGGIYPVHCLRRDDATFR
AEEG*
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mRNA from alignment at P-littoralis_Contig1:1584677..1586547-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1.359.1 ID=mRNA_P-littoralis_Contig1.359.1|Name=mRNA_P-littoralis_Contig1.359.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1871bp|location=Sequence derived from alignment at P-littoralis_Contig1:1584677..1586547- (Pylaiella littoralis U1_48)
CTGACGGTATCTGGCGTAGCAACAAGAAGCGGAAGAGAAATTCCAAGTAT
GCGGAGGACAGTGATAAGAGGGGTGGTGACTAGGAGGAGTTGTTCGGAGG
AGGGGGCGCTTCTGATCATGCCAGGCGCGGTAGCAGGGAGCGGGTGAAGA
GCAGGGACACAACGCCACAATCGGTGCCCCTCTTCCCCCACGGTTGTCGT
ATCCTGCCCGGGAGTGGGAGGGCATGGTCAAGTCCGCATTTATCCAGTTT
TATTTGACGATGGGATGGGTTTGTGGACGCCAGACGGACGGCTGTGCAAG
GTAGCATCGGAGTCGTATGCATCTGACCATTTTCGTTTGTTTCGTGAGCG
GAAATAGAAGGATCCCATCCTGCTCCTCCACAAAAATTGTCCCCGTGGTT
AACACGGCTGTACGTTCTGGACTGGGAGACCGATACACTAGATATAACCA
TTTCTGTGCTTGCGGATAAGTCAGAACGACTCGGCACTTCACGCTGCAGG
AATGGGCGTCCTCGCGGCGTGCGCATCCGAATCCGATTTAAGGGGACTGA
TGCGGGAAACTCCTGCATTTATGCGAAGTGGTGAGGGCGGCAAAAGACTA
TTGTTCGTTGTATGCTAAACCAACCGACGTTTGCGATTTCCGGACGAAGC
AGATTTGATTCGGACAGGAGTGTCACCACGCAGACGTGGGATTTTGGAAT
CTGATGGTCTCAGGGGGACAGTCTAGAGGGGTGAAGGAGGCTCGTGCCGG
CGAGATCATACATACATGGGTGCTTAAAAATGGGAAGCGGGTGATGCTTG
GACGCGTTGCACGTGACGCGCGTTCACGACACAATTTCGGATAGCATCTC
GCGATGGGAATCTGAATCTTTTGACGCTCGTCTCCGCACGTCTTGTCCCA
ACTTTGCGTGGCGTGAACAGGTCTTGGGCCCGGCGGTCATCGATCTTTGT
CCAGTAGTCCAAAACGAATGGTCAACATGCAGACAGAACTATCGACGGGA
TCGCAACTAGCTAACCCCGAACTGAAGTGTATCGACACAGTGCACTTACC
AGTTGGTACACCCCGACGGGTGCGCGTGCCAGTCTTATGGGAAATGTTGC
CAAGTGGTCAGACAATGGCTCCGTTGCGCGCGCAGGGCGGTAGGGTTCTA
AAGCTCTGCCTAGCCCACTCATCCTTGTATGGTGACACGATCAGAGGACA
TGTTGCTTCGACTGCGGGGGGTATTTACCCTGTTCATTGTTTGCGGAGAG
ACGACGCGACGTTTCGTGCCGAGGAAGGTTAATGCCGCGGTTACACTGGC
ACAAGGCAACTATGAATAGGGCAAGGTTCCGATGGCACAAAAGGGGACGA
AGCCTCCAGAATTGATCGTGAAATCGTGCCGGTCCGAGAGATGTCACGTA
GTAAGAGCGCTCTGCACTACTTGGTAAGGGCAAGGTTTAAGGGGGCCCAA
AGGGGACTAAGCCTCCAGAATTGATCGTAAATCGTACGGGTCCGAGACCT
GTCACACATGGTAAGCGCTCTGCAGTACTTGGGCGCAGGCGGTGGAGCCG
TTGCGGTGTTATTGGAGTTTGTGACCCGTCATTTCTCTCTTTGCCTGATA
GCGCTCCCCGGTGTTCGTTTAGGTGCTGTAGTGTTGAAGTAACAGTGTGG
ATATCAAGGGATATCACAAGGCTCTGGAAGCCTTACGCCAGCTAGTCGAG
AGGGCGAGCGGTGAACTCACTGAGAACTAGCTACCGGGGGAAAAGAGACC
CGATCGGGTTATAATTATAATTATTCAGAGGGGCGAAATGGAAGGAAGGT
TCGGCAACGTTCACGTCGGACGTACAGTAAGTGTCCCATAAACCAGCGAA
AGGGAAGCGAGCTACATGTAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1:1584677..1586547-

>mRNA_P-littoralis_Contig1.359.1 ID=mRNA_P-littoralis_Contig1.359.1|Name=mRNA_P-littoralis_Contig1.359.1|organism=Pylaiella littoralis U1_48|type=CDS|length=315bp|location=Sequence derived from alignment at P-littoralis_Contig1:1584677..1586547- (Pylaiella littoralis U1_48)
ATGGTCAACATGCAGACAGAACTATCGACGGGATCGCAACTAGCTAACCC
CGAACTGAAGTGTATCGACACAGTGCACTTACCAGTTGGTACACCCCGAC
GGGTGCGCGTGCCAGTCTTATGGGAAATGTTGCCAAGTGGTCAGACAATG
GCTCCGTTGCGCGCGCAGGGCGGTAGGGTTCTAAAGCTCTGCCTAGCCCA
CTCATCCTTGTATGGTGACACGATCAGAGGACATGTTGCTTCGACTGCGG
GGGGTATTTACCCTGTTCATTGTTTGCGGAGAGACGACGCGACGTTTCGT
GCCGAGGAAGGTTAA
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