mRNA_P-littoralis_Contig110.58.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig110.58.1
Unique NamemRNA_P-littoralis_Contig110.58.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig110.58.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig110contigP-littoralis_Contig110:287903..289253 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size560
Hectar predicted targeting categoryother localisation
Exons2
Cds size462
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789431.996819-CDS-P-littoralis_Contig110:287902..2883641680789431.996819-CDS-P-littoralis_Contig110:287902..288364Pylaiella littoralis U1_48CDSP-littoralis_Contig110 287903..288364 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789432.0058918-UTR-P-littoralis_Contig110:288364..2884311680789432.0058918-UTR-P-littoralis_Contig110:288364..288431Pylaiella littoralis U1_48UTRP-littoralis_Contig110 288365..288431 -
1680789432.0142193-UTR-P-littoralis_Contig110:289223..2892531680789432.0142193-UTR-P-littoralis_Contig110:289223..289253Pylaiella littoralis U1_48UTRP-littoralis_Contig110 289224..289253 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig110.58.1prot_P-littoralis_Contig110.58.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig110 287903..288364 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig110.58.1

>prot_P-littoralis_Contig110.58.1 ID=prot_P-littoralis_Contig110.58.1|Name=mRNA_P-littoralis_Contig110.58.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=154bp
MDSGGFTEDDQARIAEEVLGRVGAKRTGLGFSGGGSQPTQGNTSSSSSGW
FEQHAQSVAQEEYVGSESQDTTAGPFAWDGGQRGKAKGDARKKSDRGGTR
IAASREADGPTEREFPMVRERDIERSRERREGKPRRRSRSRSRGGSRSRS
RSRD
back to top

mRNA from alignment at P-littoralis_Contig110:287903..289253-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig110.58.1 ID=mRNA_P-littoralis_Contig110.58.1|Name=mRNA_P-littoralis_Contig110.58.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1351bp|location=Sequence derived from alignment at P-littoralis_Contig110:287903..289253- (Pylaiella littoralis U1_48)
CGACCACCACGTACATATCACCTGCCGTAGGTGAGTTTGTCTTGTCACAC
CGCTCCTGTGTGCTAACAAGGCCTGCAGCGGACTTGGCTTTTGAGTGATT
GAGTGAAAATGCTGGGTCCAAACAGCACAGCTTTTGACAGTCCCTTGTAT
GGACAAGGATACCCTCTGAACAAGCAAGACACCTACGACGCATGGCACCC
GACCTACTCCGACCCCTGACCACTGTTCCGTATGATAGTTCATGTACATA
TTGCAACGAACACAAAATAATGTACCAGGTACGTTAGACTGTCTACTCTA
GCGTTTCCATCACTTATCAGATAATGCACCGTTGCAGCTCGAGGTTATCA
GTCTGAACAAGACAATGTTTTCATACTTTTGCCGCCGCCCGCAGTGTGTG
CTGCAGTTGGACATGTGAATCCAAGTATTCGTACAGCACGGTTGTAAACG
CAACACTTTTCCTTCGATGGTTTTACTGGAGCGAAGCATATCTTTGGCGA
GTCTCAAACGAAAAAAATCTCTCCCGGACAACCTCCAATCGTTCCCTTTG
CGGATCTATCCTGCGAGTGTCTAAGGCGAGAAGGGCTCGGGCAAAACTAT
TTCATCGAATGCACTCACGAGTTGACGCCTATGCAGCAGAGTTGCGCCTA
TACAGCAGTACGATGTGCAAGTAGGTAACGTACGTCACATGACTCACCTA
GCCTGTAGACACACACGGCAGCTGCAACTCAGCAACCAGGGGCTAAATTA
TACTTGTATGATCATCACCTGTGGATTCTTCTTCACTGCGTTGTGTCTCG
TTTGAATTCCCCGTCCTCCAAGAAGAGAGAGACGAGAAAACTTAAGGATC
TGTAGGGTCGAGGCTGAAGATTAGCTAGCGGTGCGGCCAATGGACTCGGG
GGGATTCACGGAGGATGACCAAGCCAGGATCGCTGAGGAAGTTTTAGGGC
GTGTTGGCGCAAAGCGGACCGGCCTCGGTTTCAGTGGTGGGGGTTCCCAA
CCAACCCAAGGAAATACTTCGTCTTCCAGTTCGGGTTGGTTCGAGCAGCA
CGCACAATCAGTAGCTCAAGAGGAATATGTGGGCAGCGAATCTCAAGATA
CGACGGCAGGGCCGTTCGCGTGGGATGGGGGGCAAAGGGGTAAAGCGAAG
GGTGATGCGCGGAAAAAGAGCGATCGAGGTGGTACACGCATTGCTGCTTC
ACGAGAAGCCGACGGTCCTACGGAGCGTGAGTTCCCCATGGTGAGGGAAA
GAGACATTGAAAGGAGTAGGGAAAGGCGTGAGGGTAAACCAAGGAGGAGG
AGCAGGAGCCGCAGTAGGGGCGGCAGCAGGAGCAGGAGTAGAAGCAGGGA
T
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig110:287903..289253-

>mRNA_P-littoralis_Contig110.58.1 ID=mRNA_P-littoralis_Contig110.58.1|Name=mRNA_P-littoralis_Contig110.58.1|organism=Pylaiella littoralis U1_48|type=CDS|length=462bp|location=Sequence derived from alignment at P-littoralis_Contig110:287903..289253- (Pylaiella littoralis U1_48)
ATGGACTCGGGGGGATTCACGGAGGATGACCAAGCCAGGATCGCTGAGGA
AGTTTTAGGGCGTGTTGGCGCAAAGCGGACCGGCCTCGGTTTCAGTGGTG
GGGGTTCCCAACCAACCCAAGGAAATACTTCGTCTTCCAGTTCGGGTTGG
TTCGAGCAGCACGCACAATCAGTAGCTCAAGAGGAATATGTGGGCAGCGA
ATCTCAAGATACGACGGCAGGGCCGTTCGCGTGGGATGGGGGGCAAAGGG
GTAAAGCGAAGGGTGATGCGCGGAAAAAGAGCGATCGAGGTGGTACACGC
ATTGCTGCTTCACGAGAAGCCGACGGTCCTACGGAGCGTGAGTTCCCCAT
GGTGAGGGAAAGAGACATTGAAAGGAGTAGGGAAAGGCGTGAGGGTAAAC
CAAGGAGGAGGAGCAGGAGCCGCAGTAGGGGCGGCAGCAGGAGCAGGAGT
AGAAGCAGGGAT
back to top